data_9ATS # _model_server_result.job_id aPz8viJJFSEDV88TdPIHeQ _model_server_result.datetime_utc '2024-11-08 11:56:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ats # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9ATS # _exptl.entry_id 9ATS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.714 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-{[N-({[(2S)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.39 _cell.angle_gamma 90 _cell.entry_id 9ATS _cell.length_a 100.969 _cell.length_b 57.327 _cell.length_c 49.604 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ATS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.89461 0 45.86448 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 148 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C25 _struct_conn.ptnr2_label_comp_id A1AGX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1AGX _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.81 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H44 N4 O9 S' _chem_comp.formula_weight 588.714 _chem_comp.id A1AGX _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-{[N-({[(2S)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C36 A1AGX sing 1 n n C35 C34 A1AGX sing 2 n n C36 C31 A1AGX sing 3 n n C34 C33 A1AGX sing 4 n n C31 C30 A1AGX sing 5 n n C31 C32 A1AGX sing 6 n n C30 N29 A1AGX sing 7 n n C33 C32 A1AGX sing 8 n n O01 C02 A1AGX doub 9 n n N29 C02 A1AGX sing 10 n n N29 C05 A1AGX sing 11 n n C02 C03 A1AGX sing 12 n n C06 C05 A1AGX sing 13 n n C06 O07 A1AGX sing 14 n n C05 C04 A1AGX sing 15 n n C03 C04 A1AGX sing 16 n n O07 C08 A1AGX sing 17 n n C08 N09 A1AGX sing 18 n n C08 O28 A1AGX doub 19 n n C22 C23 A1AGX sing 20 n n C22 N21 A1AGX sing 21 n n N09 C10 A1AGX sing 22 n n C23 C19 A1AGX sing 23 n n O27 C15 A1AGX doub 24 n n N21 C20 A1AGX sing 25 n n C10 C15 A1AGX sing 26 n n C10 C11 A1AGX sing 27 n n C19 C20 A1AGX sing 28 n n C19 C18 A1AGX sing 29 n n C15 N16 A1AGX sing 30 n n C20 O24 A1AGX doub 31 n n C11 C12 A1AGX sing 32 n n C12 C14 A1AGX sing 33 n n C12 C13 A1AGX sing 34 n n N16 C17 A1AGX sing 35 n n C17 C18 A1AGX sing 36 n n C17 C25 A1AGX sing 37 n n C25 O26 A1AGX sing 38 n n C11 H1 A1AGX sing 39 n n C11 H2 A1AGX sing 40 n n C12 H3 A1AGX sing 41 n n C13 H4 A1AGX sing 42 n n C13 H5 A1AGX sing 43 n n C13 H6 A1AGX sing 44 n n C14 H7 A1AGX sing 45 n n C14 H8 A1AGX sing 46 n n C14 H9 A1AGX sing 47 n n C17 H10 A1AGX sing 48 n n C18 H11 A1AGX sing 49 n n C18 H12 A1AGX sing 50 n n C10 H13 A1AGX sing 51 n n C23 H14 A1AGX sing 52 n n C23 H15 A1AGX sing 53 n n C19 H16 A1AGX sing 54 n n N21 H17 A1AGX sing 55 n n C22 H18 A1AGX sing 56 n n C22 H19 A1AGX sing 57 n n C03 H20 A1AGX sing 58 n n C03 H21 A1AGX sing 59 n n C04 H22 A1AGX sing 60 n n C04 H23 A1AGX sing 61 n n C05 H24 A1AGX sing 62 n n C06 H25 A1AGX sing 63 n n C06 H26 A1AGX sing 64 n n C25 H27 A1AGX sing 65 n n C25 S1 A1AGX sing 66 n n C30 H29 A1AGX sing 67 n n C30 H30 A1AGX sing 68 n n C31 H31 A1AGX sing 69 n n C32 H32 A1AGX sing 70 n n C32 H33 A1AGX sing 71 n n C33 H34 A1AGX sing 72 n n C33 H35 A1AGX sing 73 n n C34 H36 A1AGX sing 74 n n C34 H37 A1AGX sing 75 n n C35 H38 A1AGX sing 76 n n C35 H39 A1AGX sing 77 n n C36 H40 A1AGX sing 78 n n C36 H41 A1AGX sing 79 n n N09 H42 A1AGX sing 80 n n N16 H43 A1AGX sing 81 n n O26 H44 A1AGX sing 82 n n S1 O3 A1AGX doub 83 n n S1 O1 A1AGX doub 84 n n S1 O2 A1AGX sing 85 n n O2 H28 A1AGX sing 86 n n # _atom_sites.entry_id 9ATS _atom_sites.fract_transf_matrix[1][1] 0.009904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AGX A 1 401 401 A1AGX C27 . C 3 HOH A 1 501 12 HOH HOH . C 3 HOH A 2 502 5 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 3 HOH HOH . C 3 HOH A 5 505 6 HOH HOH . C 3 HOH A 6 506 2 HOH HOH . C 3 HOH A 7 507 9 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 1 HOH HOH . C 3 HOH A 10 510 7 HOH HOH . C 3 HOH A 11 511 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1AGX . . . B 2 -21.15 26.343 0.562 1 44.6 ? C11 A1AGX 401 A 1 HETATM 2 C C12 A1AGX . . . B 2 -20.686 25.974 -0.846 1 47.14 ? C12 A1AGX 401 A 1 HETATM 3 C C13 A1AGX . . . B 2 -20.97 27.106 -1.82 1 48.97 ? C13 A1AGX 401 A 1 HETATM 4 C C14 A1AGX . . . B 2 -19.208 25.621 -0.859 1 46 ? C14 A1AGX 401 A 1 HETATM 5 C C15 A1AGX . . . B 2 -21.538 25.715 2.959 1 41.06 ? C15 A1AGX 401 A 1 HETATM 6 C C17 A1AGX . . . B 2 -21.114 26.958 5.045 1 37.93 ? C17 A1AGX 401 A 1 HETATM 7 C C18 A1AGX . . . B 2 -20.501 26.294 6.275 1 35.06 ? C18 A1AGX 401 A 1 HETATM 8 C C10 A1AGX . . . B 2 -20.962 25.256 1.619 1 43.8 ? C10 A1AGX 401 A 1 HETATM 9 C C23 A1AGX . . . B 2 -22.476 24.724 6.846 1 36.51 ? C23 A1AGX 401 A 1 HETATM 10 C C19 A1AGX . . . B 2 -21.008 24.868 6.477 1 36.39 ? C19 A1AGX 401 A 1 HETATM 11 N N21 A1AGX . . . B 2 -21.211 23.287 8.15 1 36.16 ? N21 A1AGX 401 A 1 HETATM 12 C C22 A1AGX . . . B 2 -22.532 23.371 7.533 1 36.62 ? C22 A1AGX 401 A 1 HETATM 13 C C02 A1AGX . . . B 2 -19.528 18.64 -0.243 1 54.74 ? C02 A1AGX 401 A 1 HETATM 14 C C03 A1AGX . . . B 2 -19.554 19.856 -1.123 1 56.81 ? C03 A1AGX 401 A 1 HETATM 15 C C04 A1AGX . . . B 2 -20.642 20.727 -0.491 1 54.3 ? C04 A1AGX 401 A 1 HETATM 16 C C05 A1AGX . . . B 2 -20.623 20.254 0.961 1 51.11 ? C05 A1AGX 401 A 1 HETATM 17 C C06 A1AGX . . . B 2 -21.898 20.563 1.727 1 50.7 ? C06 A1AGX 401 A 1 HETATM 18 C C08 A1AGX . . . B 2 -21.425 22.891 1.897 1 46.9 ? C08 A1AGX 401 A 1 HETATM 19 C C20 A1AGX . . . B 2 -20.319 24.098 7.589 1 36.27 ? C20 A1AGX 401 A 1 HETATM 20 C C25 A1AGX . . . B 2 -20.752 28.429 4.981 1 36.47 ? C25 A1AGX 401 A 1 HETATM 21 C C30 A1AGX . . . B 2 -21.236 17.786 1.301 1 52.04 ? C30 A1AGX 401 A 1 HETATM 22 C C31 A1AGX . . . B 2 -21.98 16.972 0.251 1 56.33 ? C31 A1AGX 401 A 1 HETATM 23 C C32 A1AGX . . . B 2 -22.666 15.749 0.836 1 54.33 ? C32 A1AGX 401 A 1 HETATM 24 C C33 A1AGX . . . B 2 -23.383 14.958 -0.256 1 58.12 ? C33 A1AGX 401 A 1 HETATM 25 C C34 A1AGX . . . B 2 -24.395 15.823 -0.981 1 54.63 ? C34 A1AGX 401 A 1 HETATM 26 C C35 A1AGX . . . B 2 -23.726 17.05 -1.565 1 57.65 ? C35 A1AGX 401 A 1 HETATM 27 C C36 A1AGX . . . B 2 -22.991 17.838 -0.484 1 57.64 ? C36 A1AGX 401 A 1 HETATM 28 N N09 A1AGX . . . B 2 -21.568 24.015 1.173 1 46.49 ? N09 A1AGX 401 A 1 HETATM 29 N N16 A1AGX . . . B 2 -20.685 26.27 3.826 1 38.93 ? N16 A1AGX 401 A 1 HETATM 30 N N29 A1AGX . . . B 2 -20.436 18.83 0.692 1 52.01 ? N29 A1AGX 401 A 1 HETATM 31 O O01 A1AGX . . . B 2 -18.831 17.636 -0.375 1 56.52 ? O01 A1AGX 401 A 1 HETATM 32 O O07 A1AGX . . . B 2 -22.265 21.932 1.45 1 50.62 ? O07 A1AGX 401 A 1 HETATM 33 O O24 A1AGX . . . B 2 -19.121 24.191 7.906 1 34.15 ? O24 A1AGX 401 A 1 HETATM 34 O O26 A1AGX . . . B 2 -21.293 29.101 6.104 1 36.68 ? O26 A1AGX 401 A 1 HETATM 35 O O27 A1AGX . . . B 2 -22.733 25.557 3.205 1 41.57 ? O27 A1AGX 401 A 1 HETATM 36 O O28 A1AGX . . . B 2 -20.662 22.758 2.825 1 44.03 ? O28 A1AGX 401 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #