data_9AU1 # _model_server_result.job_id HMVKRuXnBzHCruNf35VlIw _model_server_result.datetime_utc '2024-11-01 08:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9au1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":602}' # _entry.id 9AU1 # _exptl.entry_id 9AU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AU1 _cell.length_a 73.726 _cell.length_b 112.525 _cell.length_c 170.314 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 M CYS 22 1_555 A SG CYS 96 M CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf2 A SG CYS 154 M CYS 154 1_555 A SG CYS 210 M CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf3 A SG CYS 230 M CYS 230 1_555 B SG CYS 212 N CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 23 N CYS 23 1_555 B SG CYS 89 N CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf5 B SG CYS 134 N CYS 134 1_555 B SG CYS 194 N CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 C SG CYS 149 H CYS 149 1_555 C SG CYS 205 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 D SG CYS 22 L CYS 22 1_555 D SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf9 D SG CYS 138 L CYS 138 1_555 D SG CYS 197 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf10 E SG CYS 28 R CYS 336 1_555 E SG CYS 53 R CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf11 E SG CYS 71 R CYS 379 1_555 E SG CYS 124 R CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 E SG CYS 83 R CYS 391 1_555 E SG CYS 217 R CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 E SG CYS 172 R CYS 480 1_555 E SG CYS 180 R CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 D C PCA 1 L PCA 1 1_555 D N SER 2 L SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 E ND2 ASN 35 R ASN 343 1_555 K C1 NAG . R NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 286 n n C1 O1 NAG sing 287 n n C1 O5 NAG sing 288 n n C1 H1 NAG sing 289 n n C2 C3 NAG sing 290 n n C2 N2 NAG sing 291 n n C2 H2 NAG sing 292 n n C3 C4 NAG sing 293 n n C3 O3 NAG sing 294 n n C3 H3 NAG sing 295 n n C4 C5 NAG sing 296 n n C4 O4 NAG sing 297 n n C4 H4 NAG sing 298 n n C5 C6 NAG sing 299 n n C5 O5 NAG sing 300 n n C5 H5 NAG sing 301 n n C6 O6 NAG sing 302 n n C6 H61 NAG sing 303 n n C6 H62 NAG sing 304 n n C7 C8 NAG sing 305 n n C7 N2 NAG sing 306 n n C7 O7 NAG doub 307 n n C8 H81 NAG sing 308 n n C8 H82 NAG sing 309 n n C8 H83 NAG sing 310 n n N2 HN2 NAG sing 311 n n O1 HO1 NAG sing 312 n n O3 HO3 NAG sing 313 n n O4 HO4 NAG sing 314 n n O6 HO6 NAG sing 315 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9AU1 _atom_sites.fract_transf_matrix[1][1] 0.013564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 K N 1 301 1 K K . G 7 EDO H 1 301 301 EDO EDO . H 8 ACY L 1 301 301 ACY ACT . I 9 EPE L 1 302 530 EPE EPE . J 7 EDO R 1 601 302 EDO EDO . K 10 NAG R 1 602 529 NAG NAG . L 11 HOH M 1 301 48 HOH HOH . L 11 HOH M 2 302 12 HOH HOH . L 11 HOH M 3 303 54 HOH HOH . L 11 HOH M 4 304 38 HOH HOH . L 11 HOH M 5 305 71 HOH HOH . L 11 HOH M 6 306 18 HOH HOH . L 11 HOH M 7 307 17 HOH HOH . L 11 HOH M 8 308 37 HOH HOH . L 11 HOH M 9 309 45 HOH HOH . L 11 HOH M 10 310 77 HOH HOH . L 11 HOH M 11 311 75 HOH HOH . L 11 HOH M 12 312 69 HOH HOH . L 11 HOH M 13 313 44 HOH HOH . L 11 HOH M 14 314 2 HOH HOH . L 11 HOH M 15 315 13 HOH HOH . L 11 HOH M 16 316 76 HOH HOH . L 11 HOH M 17 317 10 HOH HOH . L 11 HOH M 18 318 46 HOH HOH . L 11 HOH M 19 319 33 HOH HOH . L 11 HOH M 20 320 70 HOH HOH . L 11 HOH M 21 321 74 HOH HOH . L 11 HOH M 22 322 8 HOH HOH . L 11 HOH M 23 323 73 HOH HOH . L 11 HOH M 24 324 34 HOH HOH . L 11 HOH M 25 325 78 HOH HOH . M 11 HOH N 1 401 55 HOH HOH . M 11 HOH N 2 402 81 HOH HOH . M 11 HOH N 3 403 79 HOH HOH . M 11 HOH N 4 404 9 HOH HOH . M 11 HOH N 5 405 14 HOH HOH . M 11 HOH N 6 406 15 HOH HOH . M 11 HOH N 7 407 80 HOH HOH . M 11 HOH N 8 408 49 HOH HOH . M 11 HOH N 9 409 16 HOH HOH . M 11 HOH N 10 410 36 HOH HOH . M 11 HOH N 11 411 58 HOH HOH . M 11 HOH N 12 412 7 HOH HOH . M 11 HOH N 13 413 1 HOH HOH . M 11 HOH N 14 414 22 HOH HOH . M 11 HOH N 15 415 82 HOH HOH . N 11 HOH H 1 401 66 HOH HOH . N 11 HOH H 2 402 42 HOH HOH . N 11 HOH H 3 403 40 HOH HOH . N 11 HOH H 4 404 3 HOH HOH . N 11 HOH H 5 405 61 HOH HOH . N 11 HOH H 6 406 65 HOH HOH . N 11 HOH H 7 407 64 HOH HOH . N 11 HOH H 8 408 63 HOH HOH . N 11 HOH H 9 409 56 HOH HOH . N 11 HOH H 10 410 62 HOH HOH . N 11 HOH H 11 411 32 HOH HOH . N 11 HOH H 12 412 72 HOH HOH . O 11 HOH L 1 401 67 HOH HOH . O 11 HOH L 2 402 5 HOH HOH . O 11 HOH L 3 403 6 HOH HOH . O 11 HOH L 4 404 57 HOH HOH . O 11 HOH L 5 405 59 HOH HOH . O 11 HOH L 6 406 68 HOH HOH . O 11 HOH L 7 407 29 HOH HOH . O 11 HOH L 8 408 19 HOH HOH . O 11 HOH L 9 409 20 HOH HOH . P 11 HOH R 1 701 60 HOH HOH . P 11 HOH R 2 702 51 HOH HOH . P 11 HOH R 3 703 24 HOH HOH . P 11 HOH R 4 704 26 HOH HOH . P 11 HOH R 5 705 28 HOH HOH . P 11 HOH R 6 706 23 HOH HOH . P 11 HOH R 7 707 30 HOH HOH . P 11 HOH R 8 708 39 HOH HOH . P 11 HOH R 9 709 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 10 -25.382 -25.377 9.586 0.87 88.75 ? C1 NAG 602 R 1 HETATM 2 C C2 NAG . . . K 10 -26.222 -26.505 8.947 0.87 90.33 ? C2 NAG 602 R 1 HETATM 3 C C3 NAG . . . K 10 -26.161 -26.421 7.421 0.87 93.5 ? C3 NAG 602 R 1 HETATM 4 C C4 NAG . . . K 10 -26.513 -25.023 6.933 0.87 98.39 ? C4 NAG 602 R 1 HETATM 5 C C5 NAG . . . K 10 -25.627 -23.992 7.621 0.87 95.17 ? C5 NAG 602 R 1 HETATM 6 C C6 NAG . . . K 10 -25.999 -22.57 7.261 0.87 93.47 ? C6 NAG 602 R 1 HETATM 7 C C7 NAG . . . K 10 -26.522 -28.906 9.423 0.87 89.84 ? C7 NAG 602 R 1 HETATM 8 C C8 NAG . . . K 10 -25.836 -30.167 9.861 0.87 87.64 ? C8 NAG 602 R 1 HETATM 9 N N2 NAG . . . K 10 -25.752 -27.81 9.383 0.87 93.8 ? N2 NAG 602 R 1 HETATM 10 O O3 NAG . . . K 10 -27.048 -27.379 6.85 0.87 95.16 ? O3 NAG 602 R 1 HETATM 11 O O4 NAG . . . K 10 -26.31 -24.935 5.525 0.87 105.23 ? O4 NAG 602 R 1 HETATM 12 O O5 NAG . . . K 10 -25.774 -24.111 9.042 0.87 90.2 ? O5 NAG 602 R 1 HETATM 13 O O6 NAG . . . K 10 -25.14 -21.626 7.884 0.87 85.48 ? O6 NAG 602 R 1 HETATM 14 O O7 NAG . . . K 10 -27.717 -28.882 9.123 0.87 89.67 ? O7 NAG 602 R 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #