data_9AUD
#
_model_server_result.job_id            JelH5bKvFgVZeTrwcEEVfw 
_model_server_result.datetime_utc      '2025-03-08 23:43:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9aud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    9AUD 
#
_exptl.entry_id    9AUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9AUD 
_cell.length_a            196.344 
_cell.length_b            196.344 
_cell.length_c            77.104 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    'R 3' 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 H N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 109 C CYS 109 1_555 A SG CYS 165 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 45 D CYS 12 1_555 B SG CYS 109 D CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 148 D CYS 115 1_555 B SG CYS 204 D CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 C SG CYS 24 A CYS 23 1_555 C SG CYS 91 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 164 A CYS 177 1_555 D SG CYS 169 B CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 D SG CYS 24 B CYS 23 1_555 D SG CYS 92 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 D SG CYS 143 B CYS 155 1_555 D SG CYS 208 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 120 C ASN 120 1_555 G C1 NAG . C NAG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 B ND2 ASN 49 D ASN 16 1_555 I C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     9AUD 
_atom_sites.fract_transf_matrix[1][1]    0.005093 
_atom_sites.fract_transf_matrix[1][2]    0.002941 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012969 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 EDO C 1 201 201 EDO EDO . 
F 5 EDO C 1 202 301 EDO EDO . 
G 6 NAG C 1 203 401 NAG NAG . 
H 5 EDO C 1 204 501 EDO EDO . 
I 6 NAG D 1 301 301 NAG NAG . 
J 5 EDO D 1 302 301 EDO EDO . 
K 5 EDO B 1 401 401 EDO EDO . 
L 5 EDO B 1 402 501 EDO EDO . 
M 7 HOH C 1 301 6 HOH HOH . 
M 7 HOH C 2 302 17 HOH HOH . 
M 7 HOH C 3 303 1 HOH HOH . 
M 7 HOH C 4 304 11 HOH HOH . 
M 7 HOH C 5 305 8 HOH HOH . 
M 7 HOH C 6 306 24 HOH HOH . 
M 7 HOH C 7 307 30 HOH HOH . 
M 7 HOH C 8 308 26 HOH HOH . 
M 7 HOH C 9 309 28 HOH HOH . 
M 7 HOH C 10 310 16 HOH HOH . 
M 7 HOH C 11 311 19 HOH HOH . 
M 7 HOH C 12 312 47 HOH HOH . 
M 7 HOH C 13 313 59 HOH HOH . 
M 7 HOH C 14 314 38 HOH HOH . 
M 7 HOH C 15 315 52 HOH HOH . 
M 7 HOH C 16 316 57 HOH HOH . 
M 7 HOH C 17 317 29 HOH HOH . 
M 7 HOH C 18 318 48 HOH HOH . 
M 7 HOH C 19 319 33 HOH HOH . 
M 7 HOH C 20 320 43 HOH HOH . 
M 7 HOH C 21 321 44 HOH HOH . 
M 7 HOH C 22 322 39 HOH HOH . 
M 7 HOH C 23 323 53 HOH HOH . 
M 7 HOH C 24 324 31 HOH HOH . 
N 7 HOH D 1 401 2 HOH HOH . 
N 7 HOH D 2 402 12 HOH HOH . 
N 7 HOH D 3 403 55 HOH HOH . 
N 7 HOH D 4 404 58 HOH HOH . 
N 7 HOH D 5 405 54 HOH HOH . 
N 7 HOH D 6 406 56 HOH HOH . 
N 7 HOH D 7 407 35 HOH HOH . 
N 7 HOH D 8 408 14 HOH HOH . 
N 7 HOH D 9 409 15 HOH HOH . 
O 7 HOH A 1 301 37 HOH HOH . 
O 7 HOH A 2 302 10 HOH HOH . 
O 7 HOH A 3 303 18 HOH HOH . 
O 7 HOH A 4 304 36 HOH HOH . 
O 7 HOH A 5 305 27 HOH HOH . 
O 7 HOH A 6 306 60 HOH HOH . 
P 7 HOH B 1 501 23 HOH HOH . 
P 7 HOH B 2 502 42 HOH HOH . 
P 7 HOH B 3 503 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 5 90.66 48.435 26.655 1 70.92 ? C1 EDO 201 C 1 
HETATM 2 O O1 EDO . . . E 5 89.708 48.419 27.724 1 58.48 ? O1 EDO 201 C 1 
HETATM 3 C C2 EDO . . . E 5 89.94 48.233 25.327 1 63.33 ? C2 EDO 201 C 1 
HETATM 4 O O2 EDO . . . E 5 90.895 48.231 24.259 1 68.89 ? O2 EDO 201 C 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#