data_9AUL # _model_server_result.job_id a1K5QClU0KAkxZTDFoW-YA _model_server_result.datetime_utc '2024-11-05 13:56:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9aul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9AUL # _exptl.entry_id 9AUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AUL _cell.length_a 45.56 _cell.length_b 64.096 _cell.length_c 105.485 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 64.096 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id 4WI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4WI _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.795 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H34 F3 N5 O4' _chem_comp.formula_weight 501.542 _chem_comp.id 4WI _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PF-07321332, bound form;nirmatrelvir, bound form;Paxlovid, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C8 4WI doub 1 n n C8 N2 4WI sing 2 n n C8 C5 4WI sing 3 n n N2 C7 4WI sing 4 n n C4 C5 4WI sing 5 n n C4 C2 4WI sing 6 n n C5 C6 4WI sing 7 n n N5 C3 4WI doub 8 n n C3 C2 4WI sing 9 n n C7 C6 4WI sing 10 n n C2 N1 4WI sing 11 n n N1 C1 4WI sing 12 n n F1 C22 4WI sing 13 n n O3 C13 4WI doub 14 n n C1 C9 4WI sing 15 n n C1 O2 4WI doub 16 n n F3 C22 4WI sing 17 n n C23 C15 4WI sing 18 n n C22 F2 4WI sing 19 n n C22 C21 4WI sing 20 n n C9 N3 4WI sing 21 n n C9 C12 4WI sing 22 n n C13 N3 4WI sing 23 n n C13 C14 4WI sing 24 n n N4 C21 4WI sing 25 n n N4 C14 4WI sing 26 n n C19 C18 4WI sing 27 n n N3 C10 4WI sing 28 n n C21 O4 4WI doub 29 n n C12 C18 4WI sing 30 n n C12 C11 4WI sing 31 n n C14 C15 4WI sing 32 n n C15 C17 4WI sing 33 n n C15 C16 4WI sing 34 n n C18 C20 4WI sing 35 n n C18 C11 4WI sing 36 n n C10 C11 4WI sing 37 n n C3 H33 4WI sing 38 n n C6 H5 4WI sing 39 n n C6 H6 4WI sing 40 n n C7 H7 4WI sing 41 n n C7 H8 4WI sing 42 n n C10 H11 4WI sing 43 n n C10 H12 4WI sing 44 n n C5 H4 4WI sing 45 n n C9 H10 4WI sing 46 n n C11 H13 4WI sing 47 n n C12 H14 4WI sing 48 n n C19 H23 4WI sing 49 n n C19 H24 4WI sing 50 n n C19 H25 4WI sing 51 n n C20 H26 4WI sing 52 n n C20 H27 4WI sing 53 n n C20 H28 4WI sing 54 n n C16 H17 4WI sing 55 n n C16 H19 4WI sing 56 n n C16 H18 4WI sing 57 n n C17 H20 4WI sing 58 n n C17 H21 4WI sing 59 n n C17 H22 4WI sing 60 n n C23 H29 4WI sing 61 n n C23 H30 4WI sing 62 n n C23 H31 4WI sing 63 n n C4 H2 4WI sing 64 n n C4 H3 4WI sing 65 n n C2 H32 4WI sing 66 n n C14 H15 4WI sing 67 n n N5 H36 4WI sing 68 n n N2 H9 4WI sing 69 n n N1 H1 4WI sing 70 n n N4 H16 4WI sing 71 n n # _atom_sites.entry_id 9AUL _atom_sites.fract_transf_matrix[1][1] 0.021949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4WI A 1 401 401 4WI UNL . C 3 HOH A 1 501 80 HOH HOH . C 3 HOH A 2 502 53 HOH HOH . C 3 HOH A 3 503 46 HOH HOH . C 3 HOH A 4 504 33 HOH HOH . C 3 HOH A 5 505 52 HOH HOH . C 3 HOH A 6 506 95 HOH HOH . C 3 HOH A 7 507 6 HOH HOH . C 3 HOH A 8 508 16 HOH HOH . C 3 HOH A 9 509 60 HOH HOH . C 3 HOH A 10 510 29 HOH HOH . C 3 HOH A 11 511 106 HOH HOH . C 3 HOH A 12 512 41 HOH HOH . C 3 HOH A 13 513 99 HOH HOH . C 3 HOH A 14 514 101 HOH HOH . C 3 HOH A 15 515 96 HOH HOH . C 3 HOH A 16 516 110 HOH HOH . C 3 HOH A 17 517 1 HOH HOH . C 3 HOH A 18 518 88 HOH HOH . C 3 HOH A 19 519 85 HOH HOH . C 3 HOH A 20 520 112 HOH HOH . C 3 HOH A 21 521 108 HOH HOH . C 3 HOH A 22 522 50 HOH HOH . C 3 HOH A 23 523 7 HOH HOH . C 3 HOH A 24 524 74 HOH HOH . C 3 HOH A 25 525 10 HOH HOH . C 3 HOH A 26 526 56 HOH HOH . C 3 HOH A 27 527 49 HOH HOH . C 3 HOH A 28 528 111 HOH HOH . C 3 HOH A 29 529 92 HOH HOH . C 3 HOH A 30 530 12 HOH HOH . C 3 HOH A 31 531 54 HOH HOH . C 3 HOH A 32 532 77 HOH HOH . C 3 HOH A 33 533 26 HOH HOH . C 3 HOH A 34 534 93 HOH HOH . C 3 HOH A 35 535 61 HOH HOH . C 3 HOH A 36 536 34 HOH HOH . C 3 HOH A 37 537 73 HOH HOH . C 3 HOH A 38 538 8 HOH HOH . C 3 HOH A 39 539 55 HOH HOH . C 3 HOH A 40 540 9 HOH HOH . C 3 HOH A 41 541 25 HOH HOH . C 3 HOH A 42 542 75 HOH HOH . C 3 HOH A 43 543 89 HOH HOH . C 3 HOH A 44 544 105 HOH HOH . C 3 HOH A 45 545 83 HOH HOH . C 3 HOH A 46 546 14 HOH HOH . C 3 HOH A 47 547 51 HOH HOH . C 3 HOH A 48 548 47 HOH HOH . C 3 HOH A 49 549 5 HOH HOH . C 3 HOH A 50 550 17 HOH HOH . C 3 HOH A 51 551 27 HOH HOH . C 3 HOH A 52 552 62 HOH HOH . C 3 HOH A 53 553 87 HOH HOH . C 3 HOH A 54 554 72 HOH HOH . C 3 HOH A 55 555 103 HOH HOH . C 3 HOH A 56 556 21 HOH HOH . C 3 HOH A 57 557 79 HOH HOH . C 3 HOH A 58 558 84 HOH HOH . C 3 HOH A 59 559 68 HOH HOH . C 3 HOH A 60 560 98 HOH HOH . C 3 HOH A 61 561 91 HOH HOH . C 3 HOH A 62 562 86 HOH HOH . C 3 HOH A 63 563 19 HOH HOH . C 3 HOH A 64 564 39 HOH HOH . C 3 HOH A 65 565 45 HOH HOH . C 3 HOH A 66 566 13 HOH HOH . C 3 HOH A 67 567 37 HOH HOH . C 3 HOH A 68 568 100 HOH HOH . C 3 HOH A 69 569 81 HOH HOH . C 3 HOH A 70 570 71 HOH HOH . C 3 HOH A 71 571 18 HOH HOH . C 3 HOH A 72 572 43 HOH HOH . C 3 HOH A 73 573 78 HOH HOH . C 3 HOH A 74 574 76 HOH HOH . C 3 HOH A 75 575 69 HOH HOH . C 3 HOH A 76 576 66 HOH HOH . C 3 HOH A 77 577 42 HOH HOH . C 3 HOH A 78 578 90 HOH HOH . C 3 HOH A 79 579 28 HOH HOH . C 3 HOH A 80 580 4 HOH HOH . C 3 HOH A 81 581 31 HOH HOH . C 3 HOH A 82 582 67 HOH HOH . C 3 HOH A 83 583 38 HOH HOH . C 3 HOH A 84 584 109 HOH HOH . C 3 HOH A 85 585 23 HOH HOH . C 3 HOH A 86 586 40 HOH HOH . C 3 HOH A 87 587 107 HOH HOH . C 3 HOH A 88 588 63 HOH HOH . C 3 HOH A 89 589 30 HOH HOH . C 3 HOH A 90 590 59 HOH HOH . C 3 HOH A 91 591 3 HOH HOH . C 3 HOH A 92 592 102 HOH HOH . C 3 HOH A 93 593 70 HOH HOH . C 3 HOH A 94 594 11 HOH HOH . C 3 HOH A 95 595 82 HOH HOH . C 3 HOH A 96 596 15 HOH HOH . C 3 HOH A 97 597 36 HOH HOH . C 3 HOH A 98 598 48 HOH HOH . C 3 HOH A 99 599 104 HOH HOH . C 3 HOH A 100 600 2 HOH HOH . C 3 HOH A 101 601 32 HOH HOH . C 3 HOH A 102 602 94 HOH HOH . C 3 HOH A 103 603 58 HOH HOH . C 3 HOH A 104 604 22 HOH HOH . C 3 HOH A 105 605 20 HOH HOH . C 3 HOH A 106 606 64 HOH HOH . C 3 HOH A 107 607 57 HOH HOH . C 3 HOH A 108 608 44 HOH HOH . C 3 HOH A 109 609 24 HOH HOH . C 3 HOH A 110 610 97 HOH HOH . C 3 HOH A 111 611 65 HOH HOH . C 3 HOH A 112 612 113 HOH HOH . C 3 HOH A 113 613 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4WI . . . B 2 -16.152 21.2 -25.002 1 28.27 ? C8 4WI 401 A 1 HETATM 2 C C3 4WI . . . B 2 -17.001 19.719 -29.575 1 28.51 ? C3 4WI 401 A 1 HETATM 3 C C1 4WI . . . B 2 -18.85 17.92 -27.32 1 25.95 ? C1 4WI 401 A 1 HETATM 4 C C13 4WI . . . B 2 -18.878 16.783 -24.484 1 26.11 ? C13 4WI 401 A 1 HETATM 5 C C21 4WI . . . B 2 -18.923 14.617 -22.014 1 30.8 ? C21 4WI 401 A 1 HETATM 6 C C6 4WI . . . B 2 -18.221 21.932 -25.901 1 27.84 ? C6 4WI 401 A 1 HETATM 7 C C7 4WI . . . B 2 -18.052 22.451 -24.487 1 27.96 ? C7 4WI 401 A 1 HETATM 8 C C10 4WI . . . B 2 -20.761 15.623 -25.769 1 25.17 ? C10 4WI 401 A 1 HETATM 9 C C5 4WI . . . B 2 -17.239 20.758 -25.956 1 27.92 ? C5 4WI 401 A 1 HETATM 10 C C9 4WI . . . B 2 -18.764 16.465 -26.929 1 25.48 ? C9 4WI 401 A 1 HETATM 11 C C11 4WI . . . B 2 -20.779 15.114 -27.173 1 24.8 ? C11 4WI 401 A 1 HETATM 12 C C12 4WI . . . B 2 -19.543 15.584 -27.866 1 24.96 ? C12 4WI 401 A 1 HETATM 13 C C18 4WI . . . B 2 -19.78 14.091 -27.688 1 24.63 ? C18 4WI 401 A 1 HETATM 14 C C19 4WI . . . B 2 -18.97 13.333 -26.701 1 24.45 ? C19 4WI 401 A 1 HETATM 15 C C20 4WI . . . B 2 -20.144 13.315 -28.888 1 24.42 ? C20 4WI 401 A 1 HETATM 16 C C16 4WI . . . B 2 -21.207 17.624 -21.574 1 26.14 ? C16 4WI 401 A 1 HETATM 17 C C17 4WI . . . B 2 -21.064 18.634 -23.784 1 26.08 ? C17 4WI 401 A 1 HETATM 18 C C23 4WI . . . B 2 -19.208 18.923 -22.224 1 25.53 ? C23 4WI 401 A 1 HETATM 19 C C4 4WI . . . B 2 -16.631 20.607 -27.33 1 27.78 ? C4 4WI 401 A 1 HETATM 20 C C2 4WI . . . B 2 -17.559 19.786 -28.197 1 27.66 ? C2 4WI 401 A 1 HETATM 21 C C14 4WI . . . B 2 -19.685 16.627 -23.212 1 27.07 ? C14 4WI 401 A 1 HETATM 22 C C22 4WI . . . B 2 -17.869 14.074 -21.09 1 32.66 ? C22 4WI 401 A 1 HETATM 23 C C15 4WI . . . B 2 -20.261 17.947 -22.707 1 26.23 ? C15 4WI 401 A 1 HETATM 24 N N5 4WI . . . B 2 -17.167 20.725 -30.364 1 28.51 ? N5 4WI 401 A 1 HETATM 25 N N2 4WI . . . B 2 -16.64 22.291 -24.287 1 28.31 ? N2 4WI 401 A 1 HETATM 26 N N3 4WI . . . B 2 -19.486 16.365 -25.654 1 25.68 ? N3 4WI 401 A 1 HETATM 27 N N1 4WI . . . B 2 -17.644 18.409 -27.771 1 26.79 ? N1 4WI 401 A 1 HETATM 28 N N4 4WI . . . B 2 -18.817 15.969 -22.256 1 28.83 ? N4 4WI 401 A 1 HETATM 29 O O1 4WI . . . B 2 -15.067 20.655 -24.886 1 28.41 ? O1 4WI 401 A 1 HETATM 30 O O2 4WI . . . B 2 -19.872 18.594 -27.247 1 25.57 ? O2 4WI 401 A 1 HETATM 31 O O3 4WI . . . B 2 -17.751 17.249 -24.492 1 25.58 ? O3 4WI 401 A 1 HETATM 32 O O4 4WI . . . B 2 -19.787 13.886 -22.476 1 31.13 ? O4 4WI 401 A 1 HETATM 33 F F1 4WI . . . B 2 -16.594 14.431 -21.401 1 33.17 ? F1 4WI 401 A 1 HETATM 34 F F2 4WI . . . B 2 -17.84 12.718 -21.148 1 33.17 ? F2 4WI 401 A 1 HETATM 35 F F3 4WI . . . B 2 -18.097 14.422 -19.79 1 32.98 ? F3 4WI 401 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 35 #