data_9AV0 # _model_server_result.job_id fQRbtcHvUr8otfNEAy0rXg _model_server_result.datetime_utc '2025-01-25 10:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9av0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 9AV0 # _exptl.entry_id 9AV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AV0 _cell.length_a 104.442 _cell.length_b 104.442 _cell.length_c 64.413 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 208.884 208.884 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 208.884 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 208.884 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 225 n n P O2P IMP sing 226 n n P O3P IMP sing 227 n n P O5' IMP sing 228 n n O2P HOP2 IMP sing 229 n n O3P HOP3 IMP sing 230 n n O5' C5' IMP sing 231 n n C5' C4' IMP sing 232 n n C5' "H5'1" IMP sing 233 n n C5' "H5'2" IMP sing 234 n n C4' O4' IMP sing 235 n n C4' C3' IMP sing 236 n n C4' H4' IMP sing 237 n n O4' C1' IMP sing 238 n n C3' O3' IMP sing 239 n n C3' C2' IMP sing 240 n n C3' H3' IMP sing 241 n n O3' HO3' IMP sing 242 n n C2' O2' IMP sing 243 n n C2' C1' IMP sing 244 n n C2' H2' IMP sing 245 n n O2' HO2' IMP sing 246 n n C1' N9 IMP sing 247 n n C1' H1' IMP sing 248 n n N9 C8 IMP sing 249 n y N9 C4 IMP sing 250 n y C8 N7 IMP doub 251 n y C8 H8 IMP sing 252 n n N7 C5 IMP sing 253 n y C5 C6 IMP sing 254 n n C5 C4 IMP doub 255 n y C6 O6 IMP doub 256 n n C6 N1 IMP sing 257 n n N1 C2 IMP sing 258 n n N1 HN1 IMP sing 259 n n C2 N3 IMP doub 260 n n C2 H2 IMP sing 261 n n N3 C4 IMP sing 262 n n # _atom_sites.entry_id 9AV0 _atom_sites.fract_transf_matrix[1][1] 0.009575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 801 801 IMP IMP . C 3 A1AG0 A 1 802 1 A1AG0 DRG . D 4 HOH A 1 901 30 HOH HOH . D 4 HOH A 2 902 26 HOH HOH . D 4 HOH A 3 903 23 HOH HOH . D 4 HOH A 4 904 3 HOH HOH . D 4 HOH A 5 905 14 HOH HOH . D 4 HOH A 6 906 1 HOH HOH . D 4 HOH A 7 907 28 HOH HOH . D 4 HOH A 8 908 6 HOH HOH . D 4 HOH A 9 909 15 HOH HOH . D 4 HOH A 10 910 18 HOH HOH . D 4 HOH A 11 911 19 HOH HOH . D 4 HOH A 12 912 9 HOH HOH . D 4 HOH A 13 913 4 HOH HOH . D 4 HOH A 14 914 10 HOH HOH . D 4 HOH A 15 915 2 HOH HOH . D 4 HOH A 16 916 25 HOH HOH . D 4 HOH A 17 917 27 HOH HOH . D 4 HOH A 18 918 8 HOH HOH . D 4 HOH A 19 919 12 HOH HOH . D 4 HOH A 20 920 20 HOH HOH . D 4 HOH A 21 921 17 HOH HOH . D 4 HOH A 22 922 16 HOH HOH . D 4 HOH A 23 923 24 HOH HOH . D 4 HOH A 24 924 21 HOH HOH . D 4 HOH A 25 925 13 HOH HOH . D 4 HOH A 26 926 5 HOH HOH . D 4 HOH A 27 927 11 HOH HOH . D 4 HOH A 28 928 22 HOH HOH . D 4 HOH A 29 929 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 125.637 111.902 -19.092 1 54.16 ? P IMP 801 A 1 HETATM 2 O O1P IMP . . . B 2 124.335 111.478 -18.499 1 54.47 ? O1P IMP 801 A 1 HETATM 3 O O2P IMP . . . B 2 125.762 113.39 -19.203 1 54.08 ? O2P IMP 801 A 1 HETATM 4 O O3P IMP . . . B 2 125.834 111.278 -20.449 1 58.9 ? O3P IMP 801 A 1 HETATM 5 O O5' IMP . . . B 2 126.883 111.403 -18.171 1 54.25 ? O5' IMP 801 A 1 HETATM 6 C C5' IMP . . . B 2 128.228 111.099 -18.604 1 55.17 ? C5' IMP 801 A 1 HETATM 7 C C4' IMP . . . B 2 128.933 110.323 -17.517 1 55.83 ? C4' IMP 801 A 1 HETATM 8 O O4' IMP . . . B 2 128.682 108.915 -17.688 1 57.08 ? O4' IMP 801 A 1 HETATM 9 C C3' IMP . . . B 2 130.452 110.42 -17.505 1 56.79 ? C3' IMP 801 A 1 HETATM 10 O O3' IMP . . . B 2 130.884 111.635 -16.907 1 55.95 ? O3' IMP 801 A 1 HETATM 11 C C2' IMP . . . B 2 130.856 109.153 -16.738 1 56.49 ? C2' IMP 801 A 1 HETATM 12 O O2' IMP . . . B 2 130.875 109.275 -15.32 1 56 ? O2' IMP 801 A 1 HETATM 13 C C1' IMP . . . B 2 129.755 108.164 -17.145 1 57.72 ? C1' IMP 801 A 1 HETATM 14 N N9 IMP . . . B 2 130.184 107.178 -18.153 1 59.76 ? N9 IMP 801 A 1 HETATM 15 C C8 IMP . . . B 2 131.026 107.392 -19.215 1 60.25 ? C8 IMP 801 A 1 HETATM 16 N N7 IMP . . . B 2 131.163 106.348 -19.994 1 61.17 ? N7 IMP 801 A 1 HETATM 17 C C5 IMP . . . B 2 130.377 105.375 -19.401 1 61.39 ? C5 IMP 801 A 1 HETATM 18 C C6 IMP . . . B 2 130.141 104.006 -19.766 1 61.43 ? C6 IMP 801 A 1 HETATM 19 O O6 IMP . . . B 2 130.493 103.445 -20.796 1 63.15 ? O6 IMP 801 A 1 HETATM 20 N N1 IMP . . . B 2 129.36 103.35 -18.839 1 61.46 ? N1 IMP 801 A 1 HETATM 21 C C2 IMP . . . B 2 128.829 103.929 -17.739 1 62.14 ? C2 IMP 801 A 1 HETATM 22 N N3 IMP . . . B 2 128.973 105.196 -17.398 1 62.23 ? N3 IMP 801 A 1 HETATM 23 C C4 IMP . . . B 2 129.773 105.872 -18.257 1 60.88 ? C4 IMP 801 A 1 HETATM 24 H HOP2 IMP . . . B 2 126.108 113.991 -18.492 1 54.27 ? HOP2 IMP 801 A 1 HETATM 25 H HOP3 IMP . . . B 2 125.989 110.297 -20.445 1 58.88 ? HOP3 IMP 801 A 1 HETATM 26 H "H5'1" IMP . . . B 2 128.771 112.03 -18.763 1 55.31 ? "H5'1" IMP 801 A 1 HETATM 27 H "H5'2" IMP . . . B 2 128.165 110.553 -19.543 1 55.59 ? "H5'2" IMP 801 A 1 HETATM 28 H H4' IMP . . . B 2 128.54 110.616 -16.545 1 55.24 ? H4' IMP 801 A 1 HETATM 29 H H3' IMP . . . B 2 130.886 110.435 -18.502 1 56.48 ? H3' IMP 801 A 1 HETATM 30 H HO3' IMP . . . B 2 131.712 111.534 -16.37 1 56.1 ? HO3' IMP 801 A 1 HETATM 31 H H2' IMP . . . B 2 131.844 108.825 -17.057 1 56.46 ? H2' IMP 801 A 1 HETATM 32 H HO2' IMP . . . B 2 129.956 109.536 -15.053 1 56.04 ? HO2' IMP 801 A 1 HETATM 33 H H1' IMP . . . B 2 129.348 107.612 -16.299 1 57.58 ? H1' IMP 801 A 1 HETATM 34 H H8 IMP . . . B 2 131.54 108.34 -19.368 1 60.29 ? H8 IMP 801 A 1 HETATM 35 H HN1 IMP . . . B 2 129.179 102.36 -18.961 1 61.26 ? HN1 IMP 801 A 1 HETATM 36 H H2 IMP . . . B 2 128.27 103.299 -17.05 1 62.1 ? H2 IMP 801 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #