data_9AV2 # _model_server_result.job_id YQZL9jaHpWzXOwZqQwBSdg _model_server_result.datetime_utc '2025-03-06 09:19:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9av2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 9AV2 # _exptl.entry_id 9AV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.886 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-chloro-3-(dimethylamino)phenyl]-N~2~-[3-(hydroxymethyl)quinolin-6-yl]-L-alaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AV2 _cell.length_a 113.343 _cell.length_b 113.343 _cell.length_c 54.964 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H23 Cl N4 O2' _chem_comp.formula_weight 398.886 _chem_comp.id VP4 _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-chloro-3-(dimethylamino)phenyl]-N~2~-[3-(hydroxymethyl)quinolin-6-yl]-L-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 VP4 sing 386 n n C27 C24 VP4 sing 387 n n C24 C25 VP4 doub 388 n y C24 C23 VP4 sing 389 n y C25 N26 VP4 sing 390 n y C23 C21 VP4 doub 391 n y N26 C20 VP4 doub 392 n y C21 C20 VP4 sing 393 n y C21 C22 VP4 sing 394 n y C20 C19 VP4 sing 395 n y C22 C17 VP4 doub 396 n y C19 C18 VP4 doub 397 n y C18 C17 VP4 sing 398 n y C17 N16 VP4 sing 399 n n N16 C2 VP4 sing 400 n n C2 C3 VP4 sing 401 n n C2 C1 VP4 sing 402 n n C7 C8 VP4 doub 403 n y C7 C6 VP4 sing 404 n y C3 N5 VP4 sing 405 n n C3 O4 VP4 doub 406 n n N5 C6 VP4 sing 407 n n C8 C9 VP4 sing 408 n y C6 C11 VP4 doub 409 n y C9 CL15 VP4 sing 410 n n C9 C10 VP4 doub 411 n y C11 C10 VP4 sing 412 n y C10 N12 VP4 sing 413 n n C14 N12 VP4 sing 414 n n N12 C13 VP4 sing 415 n n C14 H1 VP4 sing 416 n n C14 H2 VP4 sing 417 n n C14 H3 VP4 sing 418 n n C11 H4 VP4 sing 419 n n C7 H5 VP4 sing 420 n n C8 H6 VP4 sing 421 n n C13 H7 VP4 sing 422 n n C13 H8 VP4 sing 423 n n C13 H9 VP4 sing 424 n n C1 H10 VP4 sing 425 n n C1 H11 VP4 sing 426 n n C1 H12 VP4 sing 427 n n C2 H13 VP4 sing 428 n n N5 H14 VP4 sing 429 n n N16 H15 VP4 sing 430 n n C18 H16 VP4 sing 431 n n C19 H17 VP4 sing 432 n n C22 H18 VP4 sing 433 n n C23 H19 VP4 sing 434 n n C25 H20 VP4 sing 435 n n C27 H21 VP4 sing 436 n n C27 H22 VP4 sing 437 n n O28 H23 VP4 sing 438 n n # _atom_sites.entry_id 9AV2 _atom_sites.fract_transf_matrix[1][1] 0.008823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 801 801 IMP IMP . C 3 VP4 A 1 802 1 VP4 DRG . D 4 HOH A 1 901 13 HOH HOH . D 4 HOH A 2 902 40 HOH HOH . D 4 HOH A 3 903 63 HOH HOH . D 4 HOH A 4 904 150 HOH HOH . D 4 HOH A 5 905 72 HOH HOH . D 4 HOH A 6 906 74 HOH HOH . D 4 HOH A 7 907 76 HOH HOH . D 4 HOH A 8 908 80 HOH HOH . D 4 HOH A 9 909 48 HOH HOH . D 4 HOH A 10 910 39 HOH HOH . D 4 HOH A 11 911 130 HOH HOH . D 4 HOH A 12 912 12 HOH HOH . D 4 HOH A 13 913 23 HOH HOH . D 4 HOH A 14 914 17 HOH HOH . D 4 HOH A 15 915 5 HOH HOH . D 4 HOH A 16 916 116 HOH HOH . D 4 HOH A 17 917 81 HOH HOH . D 4 HOH A 18 918 1 HOH HOH . D 4 HOH A 19 919 164 HOH HOH . D 4 HOH A 20 920 158 HOH HOH . D 4 HOH A 21 921 3 HOH HOH . D 4 HOH A 22 922 222 HOH HOH . D 4 HOH A 23 923 157 HOH HOH . D 4 HOH A 24 924 45 HOH HOH . D 4 HOH A 25 925 28 HOH HOH . D 4 HOH A 26 926 120 HOH HOH . D 4 HOH A 27 927 61 HOH HOH . D 4 HOH A 28 928 170 HOH HOH . D 4 HOH A 29 929 42 HOH HOH . D 4 HOH A 30 930 140 HOH HOH . D 4 HOH A 31 931 82 HOH HOH . D 4 HOH A 32 932 36 HOH HOH . D 4 HOH A 33 933 29 HOH HOH . D 4 HOH A 34 934 9 HOH HOH . D 4 HOH A 35 935 134 HOH HOH . D 4 HOH A 36 936 34 HOH HOH . D 4 HOH A 37 937 146 HOH HOH . D 4 HOH A 38 938 113 HOH HOH . D 4 HOH A 39 939 24 HOH HOH . D 4 HOH A 40 940 178 HOH HOH . D 4 HOH A 41 941 62 HOH HOH . D 4 HOH A 42 942 117 HOH HOH . D 4 HOH A 43 943 107 HOH HOH . D 4 HOH A 44 944 220 HOH HOH . D 4 HOH A 45 945 95 HOH HOH . D 4 HOH A 46 946 104 HOH HOH . D 4 HOH A 47 947 16 HOH HOH . D 4 HOH A 48 948 100 HOH HOH . D 4 HOH A 49 949 138 HOH HOH . D 4 HOH A 50 950 90 HOH HOH . D 4 HOH A 51 951 41 HOH HOH . D 4 HOH A 52 952 19 HOH HOH . D 4 HOH A 53 953 51 HOH HOH . D 4 HOH A 54 954 199 HOH HOH . D 4 HOH A 55 955 119 HOH HOH . D 4 HOH A 56 956 4 HOH HOH . D 4 HOH A 57 957 46 HOH HOH . D 4 HOH A 58 958 152 HOH HOH . D 4 HOH A 59 959 43 HOH HOH . D 4 HOH A 60 960 155 HOH HOH . D 4 HOH A 61 961 27 HOH HOH . D 4 HOH A 62 962 47 HOH HOH . D 4 HOH A 63 963 2 HOH HOH . D 4 HOH A 64 964 86 HOH HOH . D 4 HOH A 65 965 56 HOH HOH . D 4 HOH A 66 966 38 HOH HOH . D 4 HOH A 67 967 7 HOH HOH . D 4 HOH A 68 968 203 HOH HOH . D 4 HOH A 69 969 114 HOH HOH . D 4 HOH A 70 970 127 HOH HOH . D 4 HOH A 71 971 202 HOH HOH . D 4 HOH A 72 972 108 HOH HOH . D 4 HOH A 73 973 20 HOH HOH . D 4 HOH A 74 974 79 HOH HOH . D 4 HOH A 75 975 123 HOH HOH . D 4 HOH A 76 976 118 HOH HOH . D 4 HOH A 77 977 200 HOH HOH . D 4 HOH A 78 978 52 HOH HOH . D 4 HOH A 79 979 160 HOH HOH . D 4 HOH A 80 980 112 HOH HOH . D 4 HOH A 81 981 175 HOH HOH . D 4 HOH A 82 982 66 HOH HOH . D 4 HOH A 83 983 96 HOH HOH . D 4 HOH A 84 984 214 HOH HOH . D 4 HOH A 85 985 153 HOH HOH . D 4 HOH A 86 986 110 HOH HOH . D 4 HOH A 87 987 69 HOH HOH . D 4 HOH A 88 988 68 HOH HOH . D 4 HOH A 89 989 212 HOH HOH . D 4 HOH A 90 990 26 HOH HOH . D 4 HOH A 91 991 54 HOH HOH . D 4 HOH A 92 992 161 HOH HOH . D 4 HOH A 93 993 14 HOH HOH . D 4 HOH A 94 994 92 HOH HOH . D 4 HOH A 95 995 191 HOH HOH . D 4 HOH A 96 996 97 HOH HOH . D 4 HOH A 97 997 105 HOH HOH . D 4 HOH A 98 998 131 HOH HOH . D 4 HOH A 99 999 142 HOH HOH . D 4 HOH A 100 1000 204 HOH HOH . D 4 HOH A 101 1001 22 HOH HOH . D 4 HOH A 102 1002 30 HOH HOH . D 4 HOH A 103 1003 10 HOH HOH . D 4 HOH A 104 1004 93 HOH HOH . D 4 HOH A 105 1005 106 HOH HOH . D 4 HOH A 106 1006 73 HOH HOH . D 4 HOH A 107 1007 179 HOH HOH . D 4 HOH A 108 1008 219 HOH HOH . D 4 HOH A 109 1009 55 HOH HOH . D 4 HOH A 110 1010 99 HOH HOH . D 4 HOH A 111 1011 139 HOH HOH . D 4 HOH A 112 1012 176 HOH HOH . D 4 HOH A 113 1013 33 HOH HOH . D 4 HOH A 114 1014 44 HOH HOH . D 4 HOH A 115 1015 156 HOH HOH . D 4 HOH A 116 1016 186 HOH HOH . D 4 HOH A 117 1017 177 HOH HOH . D 4 HOH A 118 1018 173 HOH HOH . D 4 HOH A 119 1019 103 HOH HOH . D 4 HOH A 120 1020 183 HOH HOH . D 4 HOH A 121 1021 65 HOH HOH . D 4 HOH A 122 1022 162 HOH HOH . D 4 HOH A 123 1023 195 HOH HOH . D 4 HOH A 124 1024 21 HOH HOH . D 4 HOH A 125 1025 91 HOH HOH . D 4 HOH A 126 1026 11 HOH HOH . D 4 HOH A 127 1027 64 HOH HOH . D 4 HOH A 128 1028 148 HOH HOH . D 4 HOH A 129 1029 57 HOH HOH . D 4 HOH A 130 1030 125 HOH HOH . D 4 HOH A 131 1031 182 HOH HOH . D 4 HOH A 132 1032 171 HOH HOH . D 4 HOH A 133 1033 35 HOH HOH . D 4 HOH A 134 1034 189 HOH HOH . D 4 HOH A 135 1035 198 HOH HOH . D 4 HOH A 136 1036 188 HOH HOH . D 4 HOH A 137 1037 121 HOH HOH . D 4 HOH A 138 1038 84 HOH HOH . D 4 HOH A 139 1039 59 HOH HOH . D 4 HOH A 140 1040 221 HOH HOH . D 4 HOH A 141 1041 196 HOH HOH . D 4 HOH A 142 1042 67 HOH HOH . D 4 HOH A 143 1043 37 HOH HOH . D 4 HOH A 144 1044 85 HOH HOH . D 4 HOH A 145 1045 187 HOH HOH . D 4 HOH A 146 1046 193 HOH HOH . D 4 HOH A 147 1047 89 HOH HOH . D 4 HOH A 148 1048 180 HOH HOH . D 4 HOH A 149 1049 102 HOH HOH . D 4 HOH A 150 1050 201 HOH HOH . D 4 HOH A 151 1051 133 HOH HOH . D 4 HOH A 152 1052 190 HOH HOH . D 4 HOH A 153 1053 25 HOH HOH . D 4 HOH A 154 1054 98 HOH HOH . D 4 HOH A 155 1055 49 HOH HOH . D 4 HOH A 156 1056 217 HOH HOH . D 4 HOH A 157 1057 192 HOH HOH . D 4 HOH A 158 1058 184 HOH HOH . D 4 HOH A 159 1059 151 HOH HOH . D 4 HOH A 160 1060 101 HOH HOH . D 4 HOH A 161 1061 129 HOH HOH . D 4 HOH A 162 1062 94 HOH HOH . D 4 HOH A 163 1063 109 HOH HOH . D 4 HOH A 164 1064 18 HOH HOH . D 4 HOH A 165 1065 87 HOH HOH . D 4 HOH A 166 1066 165 HOH HOH . D 4 HOH A 167 1067 194 HOH HOH . D 4 HOH A 168 1068 141 HOH HOH . D 4 HOH A 169 1069 172 HOH HOH . D 4 HOH A 170 1070 197 HOH HOH . D 4 HOH A 171 1071 185 HOH HOH . D 4 HOH A 172 1072 210 HOH HOH . D 4 HOH A 173 1073 6 HOH HOH . D 4 HOH A 174 1074 135 HOH HOH . D 4 HOH A 175 1075 163 HOH HOH . D 4 HOH A 176 1076 124 HOH HOH . D 4 HOH A 177 1077 58 HOH HOH . D 4 HOH A 178 1078 206 HOH HOH . D 4 HOH A 179 1079 122 HOH HOH . D 4 HOH A 180 1080 223 HOH HOH . D 4 HOH A 181 1081 149 HOH HOH . D 4 HOH A 182 1082 53 HOH HOH . D 4 HOH A 183 1083 83 HOH HOH . D 4 HOH A 184 1084 50 HOH HOH . D 4 HOH A 185 1085 132 HOH HOH . D 4 HOH A 186 1086 211 HOH HOH . D 4 HOH A 187 1087 137 HOH HOH . D 4 HOH A 188 1088 218 HOH HOH . D 4 HOH A 189 1089 216 HOH HOH . D 4 HOH A 190 1090 167 HOH HOH . D 4 HOH A 191 1091 224 HOH HOH . D 4 HOH A 192 1092 144 HOH HOH . D 4 HOH A 193 1093 136 HOH HOH . D 4 HOH A 194 1094 8 HOH HOH . D 4 HOH A 195 1095 208 HOH HOH . D 4 HOH A 196 1096 77 HOH HOH . D 4 HOH A 197 1097 143 HOH HOH . D 4 HOH A 198 1098 147 HOH HOH . D 4 HOH A 199 1099 154 HOH HOH . D 4 HOH A 200 1100 181 HOH HOH . D 4 HOH A 201 1101 174 HOH HOH . D 4 HOH A 202 1102 205 HOH HOH . D 4 HOH A 203 1103 213 HOH HOH . D 4 HOH A 204 1104 78 HOH HOH . D 4 HOH A 205 1105 209 HOH HOH . D 4 HOH A 206 1106 207 HOH HOH . D 4 HOH A 207 1107 169 HOH HOH . D 4 HOH A 208 1108 168 HOH HOH . D 4 HOH A 209 1109 166 HOH HOH . D 4 HOH A 210 1110 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 VP4 . . . C 3 10.699 -31.209 10.831 1 37.1 ? C14 VP4 802 A 1 HETATM 2 C C6 VP4 . . . C 3 11.521 -27.925 13.868 1 36.1 ? C6 VP4 802 A 1 HETATM 3 C C11 VP4 . . . C 3 11.439 -29.246 13.419 1 35.58 ? C11 VP4 802 A 1 HETATM 4 C C7 VP4 . . . C 3 12.19 -26.955 13.101 1 34.17 ? C7 VP4 802 A 1 HETATM 5 C C8 VP4 . . . C 3 12.725 -27.296 11.875 1 34.09 ? C8 VP4 802 A 1 HETATM 6 C C9 VP4 . . . C 3 12.597 -28.609 11.418 1 34.57 ? C9 VP4 802 A 1 HETATM 7 C C10 VP4 . . . C 3 11.95 -29.611 12.17 1 35.15 ? C10 VP4 802 A 1 HETATM 8 C C13 VP4 . . . C 3 11.967 -32.002 12.722 1 35.98 ? C13 VP4 802 A 1 HETATM 9 C C3 VP4 . . . C 3 10.198 -28.125 15.978 1 37.19 ? C3 VP4 802 A 1 HETATM 10 CL CL15 VP4 . . . C 3 13.273 -29.005 9.889 1 34.93 ? CL15 VP4 802 A 1 HETATM 11 C C1 VP4 . . . C 3 11.058 -27.295 18.22 1 43.67 ? C1 VP4 802 A 1 HETATM 12 C C2 VP4 . . . C 3 9.878 -27.388 17.253 1 39.49 ? C2 VP4 802 A 1 HETATM 13 O O4 VP4 . . . C 3 9.688 -29.189 15.706 1 36.84 ? O4 VP4 802 A 1 HETATM 14 N N5 VP4 . . . C 3 11.054 -27.512 15.124 1 35.24 ? N5 VP4 802 A 1 HETATM 15 N N12 VP4 . . . C 3 11.859 -30.945 11.697 1 36.23 ? N12 VP4 802 A 1 HETATM 16 N N16 VP4 . . . C 3 8.64 -27.788 17.943 1 40.86 ? N16 VP4 802 A 1 HETATM 17 C C17 VP4 . . . C 3 7.357 -27.713 17.385 1 35.48 ? C17 VP4 802 A 1 HETATM 18 C C18 VP4 . . . C 3 6.375 -28.645 17.821 1 33.06 ? C18 VP4 802 A 1 HETATM 19 C C19 VP4 . . . C 3 5.091 -28.602 17.33 1 34.18 ? C19 VP4 802 A 1 HETATM 20 C C20 VP4 . . . C 3 4.743 -27.632 16.349 1 32.72 ? C20 VP4 802 A 1 HETATM 21 C C21 VP4 . . . C 3 5.724 -26.672 15.935 1 31.58 ? C21 VP4 802 A 1 HETATM 22 C C22 VP4 . . . C 3 7.011 -26.688 16.511 1 33.41 ? C22 VP4 802 A 1 HETATM 23 C C23 VP4 . . . C 3 5.357 -25.721 14.94 1 34.35 ? C23 VP4 802 A 1 HETATM 24 C C24 VP4 . . . C 3 4.099 -25.777 14.383 1 33.91 ? C24 VP4 802 A 1 HETATM 25 C C25 VP4 . . . C 3 3.194 -26.752 14.825 1 34.3 ? C25 VP4 802 A 1 HETATM 26 N N26 VP4 . . . C 3 3.52 -27.599 15.792 1 34.62 ? N26 VP4 802 A 1 HETATM 27 C C27 VP4 . . . C 3 3.656 -24.792 13.317 1 31.76 ? C27 VP4 802 A 1 HETATM 28 O O28 VP4 . . . C 3 4.579 -23.716 13.102 1 29.39 ? O28 VP4 802 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #