data_9AV3 # _model_server_result.job_id LRvCxL7NJY70difNZ9Vcmw _model_server_result.datetime_utc '2025-01-15 14:12:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9av3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 9AV3 # _exptl.entry_id 9AV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AV3 _cell.length_a 113.76 _cell.length_b 113.76 _cell.length_c 55.502 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 225 n n P O2P IMP sing 226 n n P O3P IMP sing 227 n n P O5' IMP sing 228 n n O2P HOP2 IMP sing 229 n n O3P HOP3 IMP sing 230 n n O5' C5' IMP sing 231 n n C5' C4' IMP sing 232 n n C5' "H5'1" IMP sing 233 n n C5' "H5'2" IMP sing 234 n n C4' O4' IMP sing 235 n n C4' C3' IMP sing 236 n n C4' H4' IMP sing 237 n n O4' C1' IMP sing 238 n n C3' O3' IMP sing 239 n n C3' C2' IMP sing 240 n n C3' H3' IMP sing 241 n n O3' HO3' IMP sing 242 n n C2' O2' IMP sing 243 n n C2' C1' IMP sing 244 n n C2' H2' IMP sing 245 n n O2' HO2' IMP sing 246 n n C1' N9 IMP sing 247 n n C1' H1' IMP sing 248 n n N9 C8 IMP sing 249 n y N9 C4 IMP sing 250 n y C8 N7 IMP doub 251 n y C8 H8 IMP sing 252 n n N7 C5 IMP sing 253 n y C5 C6 IMP sing 254 n n C5 C4 IMP doub 255 n y C6 O6 IMP doub 256 n n C6 N1 IMP sing 257 n n N1 C2 IMP sing 258 n n N1 HN1 IMP sing 259 n n C2 N3 IMP doub 260 n n C2 H2 IMP sing 261 n n N3 C4 IMP sing 262 n n # _atom_sites.entry_id 9AV3 _atom_sites.fract_transf_matrix[1][1] 0.00879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 801 801 IMP IMP . C 3 A1AG0 A 1 802 1 A1AG0 DRG . D 4 HOH A 1 901 174 HOH HOH . D 4 HOH A 2 902 56 HOH HOH . D 4 HOH A 3 903 1 HOH HOH . D 4 HOH A 4 904 62 HOH HOH . D 4 HOH A 5 905 35 HOH HOH . D 4 HOH A 6 906 19 HOH HOH . D 4 HOH A 7 907 101 HOH HOH . D 4 HOH A 8 908 176 HOH HOH . D 4 HOH A 9 909 49 HOH HOH . D 4 HOH A 10 910 79 HOH HOH . D 4 HOH A 11 911 114 HOH HOH . D 4 HOH A 12 912 134 HOH HOH . D 4 HOH A 13 913 21 HOH HOH . D 4 HOH A 14 914 163 HOH HOH . D 4 HOH A 15 915 34 HOH HOH . D 4 HOH A 16 916 178 HOH HOH . D 4 HOH A 17 917 78 HOH HOH . D 4 HOH A 18 918 8 HOH HOH . D 4 HOH A 19 919 59 HOH HOH . D 4 HOH A 20 920 28 HOH HOH . D 4 HOH A 21 921 113 HOH HOH . D 4 HOH A 22 922 165 HOH HOH . D 4 HOH A 23 923 66 HOH HOH . D 4 HOH A 24 924 46 HOH HOH . D 4 HOH A 25 925 173 HOH HOH . D 4 HOH A 26 926 85 HOH HOH . D 4 HOH A 27 927 102 HOH HOH . D 4 HOH A 28 928 172 HOH HOH . D 4 HOH A 29 929 2 HOH HOH . D 4 HOH A 30 930 42 HOH HOH . D 4 HOH A 31 931 26 HOH HOH . D 4 HOH A 32 932 162 HOH HOH . D 4 HOH A 33 933 24 HOH HOH . D 4 HOH A 34 934 115 HOH HOH . D 4 HOH A 35 935 38 HOH HOH . D 4 HOH A 36 936 130 HOH HOH . D 4 HOH A 37 937 138 HOH HOH . D 4 HOH A 38 938 53 HOH HOH . D 4 HOH A 39 939 158 HOH HOH . D 4 HOH A 40 940 84 HOH HOH . D 4 HOH A 41 941 20 HOH HOH . D 4 HOH A 42 942 183 HOH HOH . D 4 HOH A 43 943 121 HOH HOH . D 4 HOH A 44 944 104 HOH HOH . D 4 HOH A 45 945 12 HOH HOH . D 4 HOH A 46 946 48 HOH HOH . D 4 HOH A 47 947 109 HOH HOH . D 4 HOH A 48 948 41 HOH HOH . D 4 HOH A 49 949 146 HOH HOH . D 4 HOH A 50 950 43 HOH HOH . D 4 HOH A 51 951 30 HOH HOH . D 4 HOH A 52 952 137 HOH HOH . D 4 HOH A 53 953 55 HOH HOH . D 4 HOH A 54 954 39 HOH HOH . D 4 HOH A 55 955 50 HOH HOH . D 4 HOH A 56 956 81 HOH HOH . D 4 HOH A 57 957 72 HOH HOH . D 4 HOH A 58 958 122 HOH HOH . D 4 HOH A 59 959 14 HOH HOH . D 4 HOH A 60 960 47 HOH HOH . D 4 HOH A 61 961 58 HOH HOH . D 4 HOH A 62 962 139 HOH HOH . D 4 HOH A 63 963 9 HOH HOH . D 4 HOH A 64 964 89 HOH HOH . D 4 HOH A 65 965 118 HOH HOH . D 4 HOH A 66 966 154 HOH HOH . D 4 HOH A 67 967 125 HOH HOH . D 4 HOH A 68 968 170 HOH HOH . D 4 HOH A 69 969 197 HOH HOH . D 4 HOH A 70 970 149 HOH HOH . D 4 HOH A 71 971 164 HOH HOH . D 4 HOH A 72 972 74 HOH HOH . D 4 HOH A 73 973 166 HOH HOH . D 4 HOH A 74 974 15 HOH HOH . D 4 HOH A 75 975 64 HOH HOH . D 4 HOH A 76 976 88 HOH HOH . D 4 HOH A 77 977 119 HOH HOH . D 4 HOH A 78 978 97 HOH HOH . D 4 HOH A 79 979 71 HOH HOH . D 4 HOH A 80 980 18 HOH HOH . D 4 HOH A 81 981 3 HOH HOH . D 4 HOH A 82 982 145 HOH HOH . D 4 HOH A 83 983 131 HOH HOH . D 4 HOH A 84 984 187 HOH HOH . D 4 HOH A 85 985 6 HOH HOH . D 4 HOH A 86 986 133 HOH HOH . D 4 HOH A 87 987 186 HOH HOH . D 4 HOH A 88 988 73 HOH HOH . D 4 HOH A 89 989 51 HOH HOH . D 4 HOH A 90 990 22 HOH HOH . D 4 HOH A 91 991 13 HOH HOH . D 4 HOH A 92 992 203 HOH HOH . D 4 HOH A 93 993 129 HOH HOH . D 4 HOH A 94 994 75 HOH HOH . D 4 HOH A 95 995 112 HOH HOH . D 4 HOH A 96 996 32 HOH HOH . D 4 HOH A 97 997 144 HOH HOH . D 4 HOH A 98 998 107 HOH HOH . D 4 HOH A 99 999 61 HOH HOH . D 4 HOH A 100 1000 11 HOH HOH . D 4 HOH A 101 1001 177 HOH HOH . D 4 HOH A 102 1002 156 HOH HOH . D 4 HOH A 103 1003 16 HOH HOH . D 4 HOH A 104 1004 140 HOH HOH . D 4 HOH A 105 1005 191 HOH HOH . D 4 HOH A 106 1006 65 HOH HOH . D 4 HOH A 107 1007 184 HOH HOH . D 4 HOH A 108 1008 31 HOH HOH . D 4 HOH A 109 1009 60 HOH HOH . D 4 HOH A 110 1010 135 HOH HOH . D 4 HOH A 111 1011 45 HOH HOH . D 4 HOH A 112 1012 33 HOH HOH . D 4 HOH A 113 1013 147 HOH HOH . D 4 HOH A 114 1014 117 HOH HOH . D 4 HOH A 115 1015 10 HOH HOH . D 4 HOH A 116 1016 29 HOH HOH . D 4 HOH A 117 1017 44 HOH HOH . D 4 HOH A 118 1018 110 HOH HOH . D 4 HOH A 119 1019 132 HOH HOH . D 4 HOH A 120 1020 175 HOH HOH . D 4 HOH A 121 1021 200 HOH HOH . D 4 HOH A 122 1022 120 HOH HOH . D 4 HOH A 123 1023 23 HOH HOH . D 4 HOH A 124 1024 52 HOH HOH . D 4 HOH A 125 1025 83 HOH HOH . D 4 HOH A 126 1026 40 HOH HOH . D 4 HOH A 127 1027 124 HOH HOH . D 4 HOH A 128 1028 70 HOH HOH . D 4 HOH A 129 1029 93 HOH HOH . D 4 HOH A 130 1030 25 HOH HOH . D 4 HOH A 131 1031 80 HOH HOH . D 4 HOH A 132 1032 111 HOH HOH . D 4 HOH A 133 1033 142 HOH HOH . D 4 HOH A 134 1034 77 HOH HOH . D 4 HOH A 135 1035 36 HOH HOH . D 4 HOH A 136 1036 127 HOH HOH . D 4 HOH A 137 1037 90 HOH HOH . D 4 HOH A 138 1038 68 HOH HOH . D 4 HOH A 139 1039 54 HOH HOH . D 4 HOH A 140 1040 100 HOH HOH . D 4 HOH A 141 1041 106 HOH HOH . D 4 HOH A 142 1042 27 HOH HOH . D 4 HOH A 143 1043 182 HOH HOH . D 4 HOH A 144 1044 37 HOH HOH . D 4 HOH A 145 1045 105 HOH HOH . D 4 HOH A 146 1046 148 HOH HOH . D 4 HOH A 147 1047 151 HOH HOH . D 4 HOH A 148 1048 128 HOH HOH . D 4 HOH A 149 1049 4 HOH HOH . D 4 HOH A 150 1050 103 HOH HOH . D 4 HOH A 151 1051 94 HOH HOH . D 4 HOH A 152 1052 157 HOH HOH . D 4 HOH A 153 1053 17 HOH HOH . D 4 HOH A 154 1054 63 HOH HOH . D 4 HOH A 155 1055 141 HOH HOH . D 4 HOH A 156 1056 99 HOH HOH . D 4 HOH A 157 1057 143 HOH HOH . D 4 HOH A 158 1058 185 HOH HOH . D 4 HOH A 159 1059 7 HOH HOH . D 4 HOH A 160 1060 116 HOH HOH . D 4 HOH A 161 1061 199 HOH HOH . D 4 HOH A 162 1062 126 HOH HOH . D 4 HOH A 163 1063 195 HOH HOH . D 4 HOH A 164 1064 150 HOH HOH . D 4 HOH A 165 1065 153 HOH HOH . D 4 HOH A 166 1066 196 HOH HOH . D 4 HOH A 167 1067 155 HOH HOH . D 4 HOH A 168 1068 180 HOH HOH . D 4 HOH A 169 1069 98 HOH HOH . D 4 HOH A 170 1070 202 HOH HOH . D 4 HOH A 171 1071 179 HOH HOH . D 4 HOH A 172 1072 194 HOH HOH . D 4 HOH A 173 1073 91 HOH HOH . D 4 HOH A 174 1074 193 HOH HOH . D 4 HOH A 175 1075 67 HOH HOH . D 4 HOH A 176 1076 201 HOH HOH . D 4 HOH A 177 1077 171 HOH HOH . D 4 HOH A 178 1078 87 HOH HOH . D 4 HOH A 179 1079 92 HOH HOH . D 4 HOH A 180 1080 161 HOH HOH . D 4 HOH A 181 1081 169 HOH HOH . D 4 HOH A 182 1082 82 HOH HOH . D 4 HOH A 183 1083 76 HOH HOH . D 4 HOH A 184 1084 95 HOH HOH . D 4 HOH A 185 1085 167 HOH HOH . D 4 HOH A 186 1086 188 HOH HOH . D 4 HOH A 187 1087 69 HOH HOH . D 4 HOH A 188 1088 198 HOH HOH . D 4 HOH A 189 1089 57 HOH HOH . D 4 HOH A 190 1090 192 HOH HOH . D 4 HOH A 191 1091 189 HOH HOH . D 4 HOH A 192 1092 96 HOH HOH . D 4 HOH A 193 1093 190 HOH HOH . D 4 HOH A 194 1094 152 HOH HOH . D 4 HOH A 195 1095 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 22.542 -4.165 18.665 1 29.44 ? P IMP 801 A 1 HETATM 2 O O1P IMP . . . B 2 21.133 -3.983 18.149 1 26.72 ? O1P IMP 801 A 1 HETATM 3 O O2P IMP . . . B 2 22.615 -3.754 20.094 1 31.84 ? O2P IMP 801 A 1 HETATM 4 O O3P IMP . . . B 2 23.119 -5.508 18.417 1 28.01 ? O3P IMP 801 A 1 HETATM 5 O O5' IMP . . . B 2 23.489 -3.107 17.843 1 29.72 ? O5' IMP 801 A 1 HETATM 6 C C5' IMP . . . B 2 24.907 -2.918 18.051 1 28.52 ? C5' IMP 801 A 1 HETATM 7 C C4' IMP . . . B 2 25.436 -2.022 16.957 1 27.46 ? C4' IMP 801 A 1 HETATM 8 O O4' IMP . . . B 2 24.954 -0.68 17.163 1 27.58 ? O4' IMP 801 A 1 HETATM 9 C C3' IMP . . . B 2 26.948 -1.859 16.901 1 26.33 ? C3' IMP 801 A 1 HETATM 10 O O3' IMP . . . B 2 27.602 -2.947 16.267 1 27.51 ? O3' IMP 801 A 1 HETATM 11 C C2' IMP . . . B 2 27.103 -0.537 16.138 1 28.75 ? C2' IMP 801 A 1 HETATM 12 O O2' IMP . . . B 2 27.045 -0.65 14.728 1 26.43 ? O2' IMP 801 A 1 HETATM 13 C C1' IMP . . . B 2 25.873 0.245 16.598 1 30.82 ? C1' IMP 801 A 1 HETATM 14 N N9 IMP . . . B 2 26.169 1.287 17.588 1 30.2 ? N9 IMP 801 A 1 HETATM 15 C C8 IMP . . . B 2 27.083 1.247 18.608 1 31.91 ? C8 IMP 801 A 1 HETATM 16 N N7 IMP . . . B 2 27.068 2.318 19.365 1 32.35 ? N7 IMP 801 A 1 HETATM 17 C C5 IMP . . . B 2 26.081 3.118 18.808 1 32 ? C5 IMP 801 A 1 HETATM 18 C C6 IMP . . . B 2 25.526 4.401 19.216 1 30.84 ? C6 IMP 801 A 1 HETATM 19 O O6 IMP . . . B 2 25.785 5.07 20.215 1 30.68 ? O6 IMP 801 A 1 HETATM 20 N N1 IMP . . . B 2 24.535 4.814 18.347 1 29.54 ? N1 IMP 801 A 1 HETATM 21 C C2 IMP . . . B 2 24.095 4.125 17.284 1 28.96 ? C2 IMP 801 A 1 HETATM 22 N N3 IMP . . . B 2 24.524 2.954 16.91 1 31.23 ? N3 IMP 801 A 1 HETATM 23 C C4 IMP . . . B 2 25.529 2.495 17.701 1 32.17 ? C4 IMP 801 A 1 HETATM 24 H HOP2 IMP . . . B 2 22.604 -2.81 20.399 1 31.04 ? HOP2 IMP 801 A 1 HETATM 25 H HOP3 IMP . . . B 2 23.832 -5.542 17.727 1 27.69 ? HOP3 IMP 801 A 1 HETATM 26 H "H5'1" IMP . . . B 2 25.423 -3.875 17.996 1 27.78 ? "H5'1" IMP 801 A 1 HETATM 27 H "H5'2" IMP . . . B 2 25.035 -2.494 19.046 1 28.84 ? "H5'2" IMP 801 A 1 HETATM 28 H H4' IMP . . . B 2 25.059 -2.367 15.995 1 26.98 ? H4' IMP 801 A 1 HETATM 29 H H3' IMP . . . B 2 27.412 -1.799 17.883 1 25.89 ? H3' IMP 801 A 1 HETATM 30 H HO3' IMP . . . B 2 27.279 -3.833 16.578 1 28.01 ? HO3' IMP 801 A 1 HETATM 31 H H2' IMP . . . B 2 28.037 -0.047 16.408 1 28.53 ? H2' IMP 801 A 1 HETATM 32 H HO2' IMP . . . B 2 26.201 -1.126 14.519 1 26.23 ? HO2' IMP 801 A 1 HETATM 33 H H1' IMP . . . B 2 25.352 0.725 15.77 1 31.88 ? H1' IMP 801 A 1 HETATM 34 H H8 IMP . . . B 2 27.75 0.398 18.749 1 32.42 ? H8 IMP 801 A 1 HETATM 35 H HN1 IMP . . . B 2 24.149 5.742 18.459 1 29.08 ? HN1 IMP 801 A 1 HETATM 36 H H2 IMP . . . B 2 23.387 4.617 16.623 1 29.26 ? H2 IMP 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #