data_9AV4 # _model_server_result.job_id EyZpXpPQWaaUHL-No6Ct-A _model_server_result.datetime_utc '2025-07-03 08:48:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9av4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9AV4 # _exptl.entry_id 9AV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.69 _cell.angle_gamma 90 _cell.entry_id 9AV4 _cell.length_a 186.97 _cell.length_b 76.06 _cell.length_c 65.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 268 n n PA O2A NAD sing 269 n n PA O5B NAD sing 270 n n PA O3 NAD sing 271 n n O2A HOA2 NAD sing 272 n n O5B C5B NAD sing 273 n n C5B C4B NAD sing 274 n n C5B H51A NAD sing 275 n n C5B H52A NAD sing 276 n n C4B O4B NAD sing 277 n n C4B C3B NAD sing 278 n n C4B H4B NAD sing 279 n n O4B C1B NAD sing 280 n n C3B O3B NAD sing 281 n n C3B C2B NAD sing 282 n n C3B H3B NAD sing 283 n n O3B HO3A NAD sing 284 n n C2B O2B NAD sing 285 n n C2B C1B NAD sing 286 n n C2B H2B NAD sing 287 n n O2B HO2A NAD sing 288 n n C1B N9A NAD sing 289 n n C1B H1B NAD sing 290 n n N9A C8A NAD sing 291 n y N9A C4A NAD sing 292 n y C8A N7A NAD doub 293 n y C8A H8A NAD sing 294 n n N7A C5A NAD sing 295 n y C5A C6A NAD sing 296 n y C5A C4A NAD doub 297 n y C6A N6A NAD sing 298 n n C6A N1A NAD doub 299 n y N6A H61A NAD sing 300 n n N6A H62A NAD sing 301 n n N1A C2A NAD sing 302 n y C2A N3A NAD doub 303 n y C2A H2A NAD sing 304 n n N3A C4A NAD sing 305 n y O3 PN NAD sing 306 n n PN O1N NAD doub 307 n n PN O2N NAD sing 308 n n PN O5D NAD sing 309 n n O5D C5D NAD sing 310 n n C5D C4D NAD sing 311 n n C5D H51N NAD sing 312 n n C5D H52N NAD sing 313 n n C4D O4D NAD sing 314 n n C4D C3D NAD sing 315 n n C4D H4D NAD sing 316 n n O4D C1D NAD sing 317 n n C3D O3D NAD sing 318 n n C3D C2D NAD sing 319 n n C3D H3D NAD sing 320 n n O3D HO3N NAD sing 321 n n C2D O2D NAD sing 322 n n C2D C1D NAD sing 323 n n C2D H2D NAD sing 324 n n O2D HO2N NAD sing 325 n n C1D N1N NAD sing 326 n n C1D H1D NAD sing 327 n n N1N C2N NAD sing 328 n y N1N C6N NAD doub 329 n y C2N C3N NAD doub 330 n y C2N H2N NAD sing 331 n n C3N C7N NAD sing 332 n n C3N C4N NAD sing 333 n y C7N O7N NAD doub 334 n n C7N N7N NAD sing 335 n n N7N H71N NAD sing 336 n n N7N H72N NAD sing 337 n n C4N C5N NAD doub 338 n y C4N H4N NAD sing 339 n n C5N C6N NAD sing 340 n y C5N H5N NAD sing 341 n n C6N H6N NAD sing 342 n n # _atom_sites.entry_id 9AV4 _atom_sites.fract_transf_matrix[1][1] 0.005348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 296 NAD NAD . D 3 A1AG4 A 1 402 301 A1AG4 PFE . E 2 NAD B 1 401 296 NAD NAD . F 3 A1AG4 B 1 402 301 A1AG4 PFE . G 4 HOH A 1 501 34 HOH HOH . G 4 HOH A 2 502 25 HOH HOH . G 4 HOH A 3 503 36 HOH HOH . G 4 HOH A 4 504 15 HOH HOH . G 4 HOH A 5 505 13 HOH HOH . G 4 HOH A 6 506 3 HOH HOH . G 4 HOH A 7 507 51 HOH HOH . G 4 HOH A 8 508 2 HOH HOH . G 4 HOH A 9 509 6 HOH HOH . G 4 HOH A 10 510 46 HOH HOH . G 4 HOH A 11 511 53 HOH HOH . G 4 HOH A 12 512 43 HOH HOH . G 4 HOH A 13 513 23 HOH HOH . G 4 HOH A 14 514 31 HOH HOH . G 4 HOH A 15 515 42 HOH HOH . G 4 HOH A 16 516 24 HOH HOH . G 4 HOH A 17 517 45 HOH HOH . G 4 HOH A 18 518 54 HOH HOH . G 4 HOH A 19 519 4 HOH HOH . G 4 HOH A 20 520 56 HOH HOH . G 4 HOH A 21 521 10 HOH HOH . G 4 HOH A 22 522 49 HOH HOH . G 4 HOH A 23 523 37 HOH HOH . G 4 HOH A 24 524 35 HOH HOH . G 4 HOH A 25 525 28 HOH HOH . G 4 HOH A 26 526 55 HOH HOH . G 4 HOH A 27 527 18 HOH HOH . G 4 HOH A 28 528 44 HOH HOH . G 4 HOH A 29 529 38 HOH HOH . G 4 HOH A 30 530 16 HOH HOH . G 4 HOH A 31 531 21 HOH HOH . G 4 HOH A 32 532 12 HOH HOH . G 4 HOH A 33 533 27 HOH HOH . G 4 HOH A 34 534 29 HOH HOH . G 4 HOH A 35 535 8 HOH HOH . G 4 HOH A 36 536 26 HOH HOH . G 4 HOH A 37 537 19 HOH HOH . H 4 HOH B 1 501 14 HOH HOH . H 4 HOH B 2 502 11 HOH HOH . H 4 HOH B 3 503 22 HOH HOH . H 4 HOH B 4 504 41 HOH HOH . H 4 HOH B 5 505 47 HOH HOH . H 4 HOH B 6 506 40 HOH HOH . H 4 HOH B 7 507 52 HOH HOH . H 4 HOH B 8 508 20 HOH HOH . H 4 HOH B 9 509 50 HOH HOH . H 4 HOH B 10 510 1 HOH HOH . H 4 HOH B 11 511 33 HOH HOH . H 4 HOH B 12 512 30 HOH HOH . H 4 HOH B 13 513 39 HOH HOH . H 4 HOH B 14 514 48 HOH HOH . H 4 HOH B 15 515 57 HOH HOH . H 4 HOH B 16 516 32 HOH HOH . H 4 HOH B 17 517 9 HOH HOH . H 4 HOH B 18 518 17 HOH HOH . H 4 HOH B 19 519 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 34.047 -47.518 -1.595 1 34.07 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . C 2 33.383 -48.413 -2.569 1 34.48 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . C 2 34.441 -48.035 -0.266 1 32.91 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . C 2 35.294 -46.899 -2.39 1 33.8 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . C 2 35.855 -45.606 -2.071 1 33.14 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . C 2 37.215 -45.593 -2.716 1 32.77 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . C 2 37.99 -44.467 -2.233 1 32.38 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . C 2 38.035 -46.855 -2.426 1 32.54 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . C 2 38.468 -47.476 -3.629 1 32.99 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . C 2 39.191 -46.339 -1.566 1 32.5 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . C 2 40.415 -47.018 -1.811 1 33.09 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . C 2 39.318 -44.914 -2.062 1 32.5 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . C 2 40.032 -44.03 -1.147 1 32.74 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . C 2 39.942 -44.009 0.219 1 32.67 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . C 2 40.838 -43.25 0.803 1 32.6 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . C 2 41.571 -42.733 -0.255 1 32.56 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . C 2 42.698 -41.887 -0.31 1 32.46 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . C 2 43.273 -41.33 0.762 1 31.4 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . C 2 43.208 -41.601 -1.53 1 33.33 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . C 2 42.624 -42.12 -2.612 1 33.18 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . C 2 41.562 -42.926 -2.681 1 33.18 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . C 2 41.082 -43.202 -1.463 1 33 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . C 2 33.126 -46.222 -1.402 1 33.8 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . C 2 31.803 -45.639 -2.091 1 32.62 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . C 2 31.924 -45.708 -3.569 1 33.02 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . C 2 30.608 -46.193 -1.417 1 31.91 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . C 2 31.932 -44.105 -1.696 1 31.91 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . C 2 32.534 -43.156 -2.6 1 31.23 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . C 2 32.164 -41.765 -2.16 1 30.92 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . C 2 30.726 -41.649 -2.069 1 31.54 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . C 2 32.713 -41.327 -0.796 1 30.27 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . C 2 33.093 -39.96 -0.843 1 29.42 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . C 2 31.509 -41.495 0.13 1 30.81 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . C 2 31.579 -40.642 1.264 1 31.19 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . C 2 30.38 -41.1 -0.825 1 31.22 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . C 2 29.037 -41.631 -0.406 1 31.04 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . C 2 28.892 -42.927 -0.086 1 30.85 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . C 2 27.652 -43.425 0.266 1 30.94 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . C 2 27.44 -44.886 0.545 1 31.21 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . C 2 26.457 -45.24 1.196 1 30.78 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . C 2 28.294 -45.752 0.015 1 31.84 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . C 2 26.575 -42.553 0.298 1 30.89 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . C 2 26.75 -41.222 -0.037 1 30.87 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . C 2 27.998 -40.774 -0.383 1 30.91 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #