data_9AV5 # _model_server_result.job_id YO4wA2byRauN7dqabWn0PA _model_server_result.datetime_utc '2025-01-11 05:00:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9av5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9AV5 # _exptl.entry_id 9AV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.58 _cell.angle_gamma 90 _cell.entry_id 9AV5 _cell.length_a 185.99 _cell.length_b 77.04 _cell.length_c 65.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 274 n n PA O2A NAD sing 275 n n PA O5B NAD sing 276 n n PA O3 NAD sing 277 n n O2A HOA2 NAD sing 278 n n O5B C5B NAD sing 279 n n C5B C4B NAD sing 280 n n C5B H51A NAD sing 281 n n C5B H52A NAD sing 282 n n C4B O4B NAD sing 283 n n C4B C3B NAD sing 284 n n C4B H4B NAD sing 285 n n O4B C1B NAD sing 286 n n C3B O3B NAD sing 287 n n C3B C2B NAD sing 288 n n C3B H3B NAD sing 289 n n O3B HO3A NAD sing 290 n n C2B O2B NAD sing 291 n n C2B C1B NAD sing 292 n n C2B H2B NAD sing 293 n n O2B HO2A NAD sing 294 n n C1B N9A NAD sing 295 n n C1B H1B NAD sing 296 n n N9A C8A NAD sing 297 n y N9A C4A NAD sing 298 n y C8A N7A NAD doub 299 n y C8A H8A NAD sing 300 n n N7A C5A NAD sing 301 n y C5A C6A NAD sing 302 n y C5A C4A NAD doub 303 n y C6A N6A NAD sing 304 n n C6A N1A NAD doub 305 n y N6A H61A NAD sing 306 n n N6A H62A NAD sing 307 n n N1A C2A NAD sing 308 n y C2A N3A NAD doub 309 n y C2A H2A NAD sing 310 n n N3A C4A NAD sing 311 n y O3 PN NAD sing 312 n n PN O1N NAD doub 313 n n PN O2N NAD sing 314 n n PN O5D NAD sing 315 n n O5D C5D NAD sing 316 n n C5D C4D NAD sing 317 n n C5D H51N NAD sing 318 n n C5D H52N NAD sing 319 n n C4D O4D NAD sing 320 n n C4D C3D NAD sing 321 n n C4D H4D NAD sing 322 n n O4D C1D NAD sing 323 n n C3D O3D NAD sing 324 n n C3D C2D NAD sing 325 n n C3D H3D NAD sing 326 n n O3D HO3N NAD sing 327 n n C2D O2D NAD sing 328 n n C2D C1D NAD sing 329 n n C2D H2D NAD sing 330 n n O2D HO2N NAD sing 331 n n C1D N1N NAD sing 332 n n C1D H1D NAD sing 333 n n N1N C2N NAD sing 334 n y N1N C6N NAD doub 335 n y C2N C3N NAD doub 336 n y C2N H2N NAD sing 337 n n C3N C7N NAD sing 338 n n C3N C4N NAD sing 339 n y C7N O7N NAD doub 340 n n C7N N7N NAD sing 341 n n N7N H71N NAD sing 342 n n N7N H72N NAD sing 343 n n C4N C5N NAD doub 344 n y C4N H4N NAD sing 345 n n C5N C6N NAD sing 346 n y C5N H5N NAD sing 347 n n C6N H6N NAD sing 348 n n # _atom_sites.entry_id 9AV5 _atom_sites.fract_transf_matrix[1][1] 0.005377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000054 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 296 NAD NAD . D 3 A1AG5 A 1 402 301 A1AG5 PFE . E 2 NAD B 1 401 300 NAD NAD . F 3 A1AG5 B 1 402 301 A1AG5 PFE . G 4 HOH A 1 501 10 HOH HOH . G 4 HOH A 2 502 2 HOH HOH . G 4 HOH A 3 503 1 HOH HOH . G 4 HOH A 4 504 5 HOH HOH . G 4 HOH A 5 505 12 HOH HOH . G 4 HOH A 6 506 9 HOH HOH . G 4 HOH A 7 507 11 HOH HOH . G 4 HOH A 8 508 3 HOH HOH . G 4 HOH A 9 509 7 HOH HOH . H 4 HOH B 1 501 6 HOH HOH . H 4 HOH B 2 502 8 HOH HOH . H 4 HOH B 3 503 13 HOH HOH . H 4 HOH B 4 504 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 33.828 -47.726 -0.633 1 47.97 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . C 2 33.126 -48.578 -1.614 1 48.57 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . C 2 34.136 -48.296 0.701 1 47.6 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . C 2 35.13 -47.207 -1.418 1 47.93 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . C 2 35.644 -45.862 -1.27 1 48.01 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . C 2 37.009 -45.823 -1.913 1 48.34 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . C 2 37.752 -44.657 -1.479 1 48.09 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . C 2 37.893 -47.045 -1.621 1 48.74 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . C 2 38.242 -47.731 -2.822 1 49.43 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . C 2 39.1 -46.446 -0.884 1 48.45 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . C 2 40.344 -47.079 -1.161 1 48.88 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . C 2 39.112 -45.036 -1.442 1 47.98 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . C 2 39.881 -44.089 -0.64 1 47.58 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . C 2 39.811 -43.896 0.714 1 47.31 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . C 2 40.72 -43.08 1.186 1 47.14 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . C 2 41.44 -42.706 0.062 1 47.32 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . C 2 42.52 -41.819 -0.125 1 47.49 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . C 2 43.149 -41.184 0.869 1 47.45 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . C 2 42.961 -41.623 -1.387 1 47.42 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . C 2 42.365 -42.28 -2.381 1 47.55 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . C 2 41.351 -43.144 -2.323 1 47.78 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . C 2 40.932 -43.317 -1.07 1 47.51 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . C 2 33.012 -46.36 -0.442 1 47.7 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . C 2 31.644 -45.779 -1.039 1 47.41 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . C 2 31.665 -45.882 -2.515 1 47.45 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . C 2 30.512 -46.378 -0.293 1 47.43 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . C 2 31.755 -44.233 -0.646 1 47.03 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . C 2 32.198 -43.257 -1.615 1 46.44 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . C 2 31.861 -41.857 -1.166 1 46.03 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . C 2 30.439 -41.731 -0.937 1 46.14 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . C 2 32.549 -41.359 0.109 1 45.5 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . C 2 32.999 -40.017 -0.063 1 45.31 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . C 2 31.442 -41.462 1.161 1 45.24 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . C 2 31.505 -40.413 2.114 1 45.1 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . C 2 30.214 -41.135 0.309 1 45.6 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . C 2 28.942 -41.676 0.883 1 45.25 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . C 2 28.875 -42.964 1.26 1 45.33 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . C 2 27.659 -43.533 1.582 1 45.53 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . C 2 27.509 -45.027 1.74 1 46.26 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . C 2 26.621 -45.478 2.485 1 46.45 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . C 2 28.311 -45.812 1.026 1 46.5 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . C 2 26.539 -42.714 1.625 1 44.95 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . C 2 26.641 -41.383 1.262 1 44.73 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . C 2 27.863 -40.871 0.912 1 44.88 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #