data_9AV7 # _model_server_result.job_id zYiLnkLcON3lpnEnPzOE2g _model_server_result.datetime_utc '2024-10-19 17:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9av7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9AV7 # _exptl.entry_id 9AV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AV7 _cell.length_a 87.554 _cell.length_b 108.124 _cell.length_c 41.554 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 9AV7 _atom_sites.fract_transf_matrix[1][1] 0.011422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP ANP . C 3 HOH A 1 501 19 HOH HOH . C 3 HOH A 2 502 64 HOH HOH . C 3 HOH A 3 503 48 HOH HOH . C 3 HOH A 4 504 55 HOH HOH . C 3 HOH A 5 505 41 HOH HOH . C 3 HOH A 6 506 27 HOH HOH . C 3 HOH A 7 507 49 HOH HOH . C 3 HOH A 8 508 10 HOH HOH . C 3 HOH A 9 509 21 HOH HOH . C 3 HOH A 10 510 8 HOH HOH . C 3 HOH A 11 511 24 HOH HOH . C 3 HOH A 12 512 30 HOH HOH . C 3 HOH A 13 513 43 HOH HOH . C 3 HOH A 14 514 54 HOH HOH . C 3 HOH A 15 515 29 HOH HOH . C 3 HOH A 16 516 9 HOH HOH . C 3 HOH A 17 517 56 HOH HOH . C 3 HOH A 18 518 17 HOH HOH . C 3 HOH A 19 519 39 HOH HOH . C 3 HOH A 20 520 44 HOH HOH . C 3 HOH A 21 521 5 HOH HOH . C 3 HOH A 22 522 13 HOH HOH . C 3 HOH A 23 523 33 HOH HOH . C 3 HOH A 24 524 4 HOH HOH . C 3 HOH A 25 525 42 HOH HOH . C 3 HOH A 26 526 45 HOH HOH . C 3 HOH A 27 527 61 HOH HOH . C 3 HOH A 28 528 25 HOH HOH . C 3 HOH A 29 529 51 HOH HOH . C 3 HOH A 30 530 47 HOH HOH . C 3 HOH A 31 531 28 HOH HOH . C 3 HOH A 32 532 60 HOH HOH . C 3 HOH A 33 533 37 HOH HOH . C 3 HOH A 34 534 59 HOH HOH . C 3 HOH A 35 535 65 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 32 HOH HOH . C 3 HOH A 38 538 40 HOH HOH . C 3 HOH A 39 539 18 HOH HOH . C 3 HOH A 40 540 52 HOH HOH . C 3 HOH A 41 541 57 HOH HOH . C 3 HOH A 42 542 53 HOH HOH . C 3 HOH A 43 543 20 HOH HOH . C 3 HOH A 44 544 46 HOH HOH . C 3 HOH A 45 545 16 HOH HOH . C 3 HOH A 46 546 12 HOH HOH . C 3 HOH A 47 547 2 HOH HOH . C 3 HOH A 48 548 11 HOH HOH . C 3 HOH A 49 549 3 HOH HOH . C 3 HOH A 50 550 7 HOH HOH . C 3 HOH A 51 551 22 HOH HOH . C 3 HOH A 52 552 6 HOH HOH . C 3 HOH A 53 553 26 HOH HOH . C 3 HOH A 54 554 62 HOH HOH . C 3 HOH A 55 555 63 HOH HOH . C 3 HOH A 56 556 1 HOH HOH . C 3 HOH A 57 557 15 HOH HOH . C 3 HOH A 58 558 14 HOH HOH . C 3 HOH A 59 559 38 HOH HOH . C 3 HOH A 60 560 23 HOH HOH . C 3 HOH A 61 561 58 HOH HOH . C 3 HOH A 62 562 31 HOH HOH . C 3 HOH A 63 563 34 HOH HOH . C 3 HOH A 64 564 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 18.718 6.241 17.168 1 60.15 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 18.77 5.949 18.664 1 64.44 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 19.991 5.887 16.413 1 69.38 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 18.102 7.609 16.807 1 62.59 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 17.743 3.401 16.614 1 64.89 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 16.439 2.836 16.126 1 61.58 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 18.391 2.961 17.905 1 68.33 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 17.592 5.054 16.503 1 64.68 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 19.148 3.747 14.038 1 66.65 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 18.104 3.349 13.055 1 62.18 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 19.538 5.21 14.176 1 71.33 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 18.957 3.065 15.489 1 61.66 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 20.519 2.886 13.665 1 65.37 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 21.773 3.159 14.27 1 63.85 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 22.773 3.124 13.156 1 61.61 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 22.668 1.9 12.437 1 58.77 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 22.553 4.193 12.075 1 61.47 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 22.893 5.461 12.479 1 63.23 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 23.351 3.572 10.938 1 62.39 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 24.693 3.736 11.261 1 68.39 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 22.856 2.109 11.051 1 59.76 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 21.638 1.814 10.288 1 51.06 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 20.324 1.834 10.667 1 51.46 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 19.505 1.469 9.704 1 57.26 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 20.316 1.211 8.626 1 48.12 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 20.092 0.798 7.299 1 55.06 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 18.885 0.547 6.759 1 60.99 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 21.16 0.629 6.519 1 58.13 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 22.374 0.866 7.008 1 54.57 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 22.71 1.253 8.215 1 48.71 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 21.647 1.41 8.983 1 47.89 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #