data_9AVT # _model_server_result.job_id GwCFeLi1bahy_Ov091lULQ _model_server_result.datetime_utc '2024-10-11 20:33:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9avt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":102}' # _entry.id 9AVT # _exptl.entry_id 9AVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9AVT _cell.length_a 90.323 _cell.length_b 90.323 _cell.length_c 86.335 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SG CYS 7 C CYS 670 1_555 I ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 C SG CYS 10 C CYS 673 1_555 I ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 C SG CYS 21 C CYS 684 1_555 I ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 C SG CYS 24 C CYS 687 1_555 I ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 9AVT _atom_sites.fract_transf_matrix[1][1] 0.011071 _atom_sites.fract_transf_matrix[1][2] 0.006392 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SO4 A 1 100 100 SO4 SO4 . E 3 SO4 A 1 101 101 SO4 SO4 . F 3 SO4 B 1 101 105 SO4 SO4 . G 4 DTT B 1 102 1 DTT DTT . H 3 SO4 C 1 701 104 SO4 SO4 . I 5 ZN C 1 702 1 ZN ZN . J 6 HOH A 1 201 117 HOH HOH . J 6 HOH A 2 202 182 HOH HOH . J 6 HOH A 3 203 15 HOH HOH . J 6 HOH A 4 204 41 HOH HOH . J 6 HOH A 5 205 29 HOH HOH . J 6 HOH A 6 206 166 HOH HOH . J 6 HOH A 7 207 21 HOH HOH . J 6 HOH A 8 208 180 HOH HOH . J 6 HOH A 9 209 46 HOH HOH . J 6 HOH A 10 210 39 HOH HOH . J 6 HOH A 11 211 36 HOH HOH . J 6 HOH A 12 212 116 HOH HOH . J 6 HOH A 13 213 33 HOH HOH . J 6 HOH A 14 214 205 HOH HOH . J 6 HOH A 15 215 8 HOH HOH . J 6 HOH A 16 216 82 HOH HOH . J 6 HOH A 17 217 59 HOH HOH . J 6 HOH A 18 218 32 HOH HOH . J 6 HOH A 19 219 137 HOH HOH . J 6 HOH A 20 220 10 HOH HOH . J 6 HOH A 21 221 61 HOH HOH . J 6 HOH A 22 222 174 HOH HOH . J 6 HOH A 23 223 14 HOH HOH . J 6 HOH A 24 224 241 HOH HOH . J 6 HOH A 25 225 40 HOH HOH . J 6 HOH A 26 226 11 HOH HOH . J 6 HOH A 27 227 3 HOH HOH . J 6 HOH A 28 228 300 HOH HOH . J 6 HOH A 29 229 148 HOH HOH . J 6 HOH A 30 230 64 HOH HOH . J 6 HOH A 31 231 5 HOH HOH . J 6 HOH A 32 232 107 HOH HOH . J 6 HOH A 33 233 42 HOH HOH . J 6 HOH A 34 234 66 HOH HOH . J 6 HOH A 35 235 105 HOH HOH . J 6 HOH A 36 236 37 HOH HOH . J 6 HOH A 37 237 163 HOH HOH . J 6 HOH A 38 238 84 HOH HOH . J 6 HOH A 39 239 231 HOH HOH . J 6 HOH A 40 240 12 HOH HOH . J 6 HOH A 41 241 22 HOH HOH . J 6 HOH A 42 242 243 HOH HOH . J 6 HOH A 43 243 81 HOH HOH . J 6 HOH A 44 244 337 HOH HOH . J 6 HOH A 45 245 34 HOH HOH . J 6 HOH A 46 246 24 HOH HOH . J 6 HOH A 47 247 108 HOH HOH . J 6 HOH A 48 248 229 HOH HOH . J 6 HOH A 49 249 136 HOH HOH . J 6 HOH A 50 250 56 HOH HOH . J 6 HOH A 51 251 125 HOH HOH . K 6 HOH B 1 201 130 HOH HOH . K 6 HOH B 2 202 261 HOH HOH . K 6 HOH B 3 203 191 HOH HOH . K 6 HOH B 4 204 134 HOH HOH . K 6 HOH B 5 205 167 HOH HOH . K 6 HOH B 6 206 264 HOH HOH . K 6 HOH B 7 207 319 HOH HOH . K 6 HOH B 8 208 188 HOH HOH . K 6 HOH B 9 209 43 HOH HOH . K 6 HOH B 10 210 102 HOH HOH . K 6 HOH B 11 211 238 HOH HOH . K 6 HOH B 12 212 67 HOH HOH . K 6 HOH B 13 213 236 HOH HOH . K 6 HOH B 14 214 121 HOH HOH . K 6 HOH B 15 215 128 HOH HOH . K 6 HOH B 16 216 79 HOH HOH . K 6 HOH B 17 217 176 HOH HOH . K 6 HOH B 18 218 362 HOH HOH . K 6 HOH B 19 219 2 HOH HOH . K 6 HOH B 20 220 68 HOH HOH . K 6 HOH B 21 221 69 HOH HOH . K 6 HOH B 22 222 321 HOH HOH . K 6 HOH B 23 223 44 HOH HOH . K 6 HOH B 24 224 184 HOH HOH . K 6 HOH B 25 225 154 HOH HOH . K 6 HOH B 26 226 7 HOH HOH . K 6 HOH B 27 227 112 HOH HOH . K 6 HOH B 28 228 6 HOH HOH . K 6 HOH B 29 229 92 HOH HOH . K 6 HOH B 30 230 93 HOH HOH . K 6 HOH B 31 231 295 HOH HOH . K 6 HOH B 32 232 70 HOH HOH . K 6 HOH B 33 233 19 HOH HOH . K 6 HOH B 34 234 16 HOH HOH . K 6 HOH B 35 235 51 HOH HOH . K 6 HOH B 36 236 142 HOH HOH . K 6 HOH B 37 237 57 HOH HOH . K 6 HOH B 38 238 101 HOH HOH . K 6 HOH B 39 239 114 HOH HOH . K 6 HOH B 40 240 303 HOH HOH . K 6 HOH B 41 241 309 HOH HOH . K 6 HOH B 42 242 369 HOH HOH . K 6 HOH B 43 243 159 HOH HOH . K 6 HOH B 44 244 361 HOH HOH . K 6 HOH B 45 245 35 HOH HOH . K 6 HOH B 46 246 111 HOH HOH . K 6 HOH B 47 247 156 HOH HOH . K 6 HOH B 48 248 138 HOH HOH . K 6 HOH B 49 249 83 HOH HOH . K 6 HOH B 50 250 363 HOH HOH . K 6 HOH B 51 251 220 HOH HOH . L 6 HOH C 1 801 380 HOH HOH . L 6 HOH C 2 802 283 HOH HOH . L 6 HOH C 3 803 122 HOH HOH . L 6 HOH C 4 804 9 HOH HOH . L 6 HOH C 5 805 147 HOH HOH . L 6 HOH C 6 806 48 HOH HOH . L 6 HOH C 7 807 50 HOH HOH . L 6 HOH C 8 808 54 HOH HOH . L 6 HOH C 9 809 58 HOH HOH . L 6 HOH C 10 810 27 HOH HOH . L 6 HOH C 11 811 13 HOH HOH . L 6 HOH C 12 812 23 HOH HOH . L 6 HOH C 13 813 17 HOH HOH . L 6 HOH C 14 814 173 HOH HOH . L 6 HOH C 15 815 28 HOH HOH . L 6 HOH C 16 816 52 HOH HOH . L 6 HOH C 17 817 1 HOH HOH . L 6 HOH C 18 818 55 HOH HOH . L 6 HOH C 19 819 4 HOH HOH . L 6 HOH C 20 820 210 HOH HOH . L 6 HOH C 21 821 118 HOH HOH . L 6 HOH C 22 822 127 HOH HOH . L 6 HOH C 23 823 131 HOH HOH . L 6 HOH C 24 824 89 HOH HOH . L 6 HOH C 25 825 26 HOH HOH . L 6 HOH C 26 826 31 HOH HOH . L 6 HOH C 27 827 60 HOH HOH . L 6 HOH C 28 828 77 HOH HOH . L 6 HOH C 29 829 18 HOH HOH . L 6 HOH C 30 830 49 HOH HOH . L 6 HOH C 31 831 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . G 4 30.851 -20.031 8.375 0.45 53.77 ? S1 DTT 102 B 1 HETATM 2 C C1 DTT . . . G 4 30.092 -18.637 7.465 0.45 42.9 ? C1 DTT 102 B 1 HETATM 3 C C2 DTT . . . G 4 31.088 -17.504 7.36 0.45 43.46 ? C2 DTT 102 B 1 HETATM 4 O O2 DTT . . . G 4 30.354 -16.38 6.978 0.45 46.85 ? O2 DTT 102 B 1 HETATM 5 C C3 DTT . . . G 4 32.214 -17.742 6.358 0.45 50.86 ? C3 DTT 102 B 1 HETATM 6 O O3 DTT . . . G 4 31.503 -17.91 5.152 0.45 38.18 ? O3 DTT 102 B 1 HETATM 7 C C4 DTT . . . G 4 33.198 -16.576 6.215 0.45 52.32 ? C4 DTT 102 B 1 HETATM 8 S S4 DTT . . . G 4 32.519 -15.005 6.862 0.45 42.75 ? S4 DTT 102 B 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 170 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #