data_9AXF # _model_server_result.job_id fcfG6mm5qv6v6RYixkzwJQ _model_server_result.datetime_utc '2025-09-07 19:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9axf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":1005}' # _entry.id 9AXF # _exptl.entry_id 9AXF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 216.236 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYCLOMETHYLTRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AXF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 P N N ? 9 GA N N # _pdbx_entity_branch.entity_id 7 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 7 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 7 n H NAG 1 C 1 NAG C 1 NAG 7 n H NAG 2 C 2 NAG C 2 NAG 7 n I NAG 1 D 1 NAG D 1 NAG 7 n I NAG 2 D 2 NAG D 2 NAG 7 n J NAG 1 E 1 NAG E 1 NAG 7 n J NAG 2 E 2 NAG E 2 NAG 7 n K NAG 1 F 1 NAG F 1 NAG 7 n K NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 R CYS 60 1_555 A SG CYS 101 R CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 236 R CYS 236 1_555 A SG CYS 561 R CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 358 R CYS 358 1_555 A SG CYS 395 R CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 437 R CYS 437 1_555 A SG CYS 449 R CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 542 R CYS 542 1_555 A SG CYS 562 R CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 546 R CYS 546 1_555 A SG CYS 565 R CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 568 R CYS 568 1_555 A SG CYS 582 R CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 585 R CYS 585 1_555 A SG CYS 598 R CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 677 R CYS 677 1_555 A SG CYS 765 R CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 60 Q CYS 60 1_555 B SG CYS 101 Q CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 B SG CYS 236 Q CYS 236 1_555 B SG CYS 561 Q CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 358 Q CYS 358 1_555 B SG CYS 395 Q CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 B SG CYS 437 Q CYS 437 1_555 B SG CYS 449 Q CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 B SG CYS 542 Q CYS 542 1_555 B SG CYS 562 Q CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 B SG CYS 546 Q CYS 546 1_555 B SG CYS 565 Q CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 B SG CYS 568 Q CYS 568 1_555 B SG CYS 582 Q CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf17 B SG CYS 585 Q CYS 585 1_555 B SG CYS 598 Q CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 B SG CYS 677 Q CYS 677 1_555 B SG CYS 765 Q CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 F SG CYS 60 H CYS 42 1_555 F SG CYS 134 H CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf20 F SG CYS 197 H CYS 179 1_555 F SG CYS 267 H CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf21 G SG CYS 44 N CYS 22 1_555 G SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf22 G SG CYS 121 N CYS 99 1_555 G SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 261 R ASN 261 1_555 L C1 NAG . R NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 287 R ASN 287 1_555 M C1 NAG . R NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 468 R ASN 468 1_555 N C1 NAG . R NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 488 R ASN 488 1_555 H C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 A ND2 ASN 541 R ASN 541 1_555 I C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A ND2 ASN 594 R ASN 594 1_555 O C1 NAG . R NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 B ND2 ASN 261 Q ASN 261 1_555 CA C1 NAG . Q NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 B ND2 ASN 287 Q ASN 287 1_555 DA C1 NAG . Q NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 B ND2 ASN 468 Q ASN 468 1_555 EA C1 NAG . Q NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale10 B ND2 ASN 488 Q ASN 488 1_555 J C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 B ND2 ASN 541 Q ASN 541 1_555 K C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 B ND2 ASN 594 Q ASN 594 1_555 FA C1 NAG . Q NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 H O4 NAG . C NAG 1 1_555 H C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale14 I O4 NAG . D NAG 1 1_555 I C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 J O4 NAG . E NAG 1 1_555 J C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 K O4 NAG . F NAG 1 1_555 K C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? metalc ? metalc1 A OG1 THR 100 R THR 100 1_555 R CA CA . R CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc2 A O GLY 557 R GLY 557 1_555 T CA CA . R CA 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc3 B O ILE 81 Q ILE 81 1_555 IA CA CA . Q CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc4 B O SER 84 Q SER 84 1_555 IA CA CA . Q CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc5 B O LEU 87 Q LEU 87 1_555 IA CA CA . Q CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc6 B O LEU 88 Q LEU 88 1_555 IA CA CA . Q CA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc7 B OG1 THR 100 Q THR 100 1_555 JA CA CA . Q CA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 B OG SER 302 Q SER 302 1_555 KA CA CA . Q CA 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc9 B O GLY 557 Q GLY 557 1_555 LA CA CA . Q CA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? # _chem_comp.formula 'C12 H12 N2 O2' _chem_comp.formula_weight 216.236 _chem_comp.id TCR _chem_comp.mon_nstd_flag n _chem_comp.name CYCLOMETHYLTRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TCR sing 603 n n N C9 TCR sing 604 n n N HN TCR sing 605 n n CA CB TCR sing 606 n n CA C TCR sing 607 n n CA HA TCR sing 608 n n CB CG TCR sing 609 n n CB HB1 TCR sing 610 n n CB HB2 TCR sing 611 n n CG CD2 TCR sing 612 n y CG CD1 TCR doub 613 n y CD2 CE2 TCR doub 614 n y CD2 CE3 TCR sing 615 n y CE2 NE1 TCR sing 616 n y CE2 CZ2 TCR sing 617 n y CE3 CZ3 TCR doub 618 n y CE3 HE3 TCR sing 619 n n CD1 NE1 TCR sing 620 n y CD1 C9 TCR sing 621 n n NE1 HNE TCR sing 622 n n CZ2 CH2 TCR doub 623 n y CZ2 HZ2 TCR sing 624 n n CZ3 CH2 TCR sing 625 n y CZ3 HZ3 TCR sing 626 n n CH2 HH2 TCR sing 627 n n C9 H91 TCR sing 628 n n C9 H92 TCR sing 629 n n C OXT TCR sing 630 n n C O1 TCR doub 631 n n OXT HXT TCR sing 632 n n # _atom_sites.entry_id 9AXF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 8 NAG R 1 1001 1002 NAG NAG . M 8 NAG R 1 1002 1003 NAG NAG . N 8 NAG R 1 1003 1004 NAG NAG . O 8 NAG R 1 1004 1010 NAG NAG . P 9 TCR R 1 1005 1 TCR TCR . Q 10 PO4 R 1 1006 1 PO4 PO4 . R 11 CA R 1 1007 3 CA CA . S 11 CA R 1 1008 5 CA CA . T 11 CA R 1 1009 8 CA CA . U 12 9IG R 1 1010 1 9IG 568 . V 13 AV0 R 1 1011 1 AV0 AV0 . W 14 Y01 R 1 1012 2 Y01 Y01 . X 14 Y01 R 1 1013 3 Y01 Y01 . Y 14 Y01 R 1 1014 4 Y01 Y01 . Z 15 CLR R 1 1015 3 CLR CLR . AA 15 CLR R 1 1016 6 CLR CLR . BA 15 CLR R 1 1017 8 CLR CLR . CA 8 NAG Q 1 1001 1002 NAG NAG . DA 8 NAG Q 1 1002 1003 NAG NAG . EA 8 NAG Q 1 1003 1004 NAG NAG . FA 8 NAG Q 1 1004 1010 NAG NAG . GA 9 TCR Q 1 1005 1 TCR TCR . HA 10 PO4 Q 1 1006 2 PO4 PO4 . IA 11 CA Q 1 1007 2 CA CA . JA 11 CA Q 1 1008 4 CA CA . KA 11 CA Q 1 1009 6 CA CA . LA 11 CA Q 1 1010 7 CA CA . MA 12 9IG Q 1 1011 1 9IG 568 . NA 14 Y01 Q 1 1012 1 Y01 Y01 . OA 15 CLR Q 1 1013 1 CLR CLR . PA 15 CLR Q 1 1014 2 CLR CLR . QA 15 CLR Q 1 1015 4 CLR CLR . RA 15 CLR Q 1 1016 5 CLR CLR . SA 15 CLR Q 1 1017 7 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TCR . . . GA 9 222.967 193.154 312.158 1 19.68 ? N TCR 1005 Q 1 HETATM 2 C CA TCR . . . GA 9 221.732 192.386 311.787 1 19.68 ? CA TCR 1005 Q 1 HETATM 3 C CB TCR . . . GA 9 221.796 190.938 312.282 1 19.68 ? CB TCR 1005 Q 1 HETATM 4 C CG TCR . . . GA 9 223.073 190.388 311.918 1 19.68 ? CG TCR 1005 Q 1 HETATM 5 C CD2 TCR . . . GA 9 223.474 189.029 311.976 1 19.68 ? CD2 TCR 1005 Q 1 HETATM 6 C CE2 TCR . . . GA 9 224.809 189.009 311.512 1 19.68 ? CE2 TCR 1005 Q 1 HETATM 7 C CE3 TCR . . . GA 9 222.849 187.846 312.363 1 19.68 ? CE3 TCR 1005 Q 1 HETATM 8 C CD1 TCR . . . GA 9 224.108 191.14 311.444 1 19.68 ? CD1 TCR 1005 Q 1 HETATM 9 N NE1 TCR . . . GA 9 225.18 190.31 311.195 1 19.68 ? NE1 TCR 1005 Q 1 HETATM 10 C CZ2 TCR . . . GA 9 225.533 187.82 311.434 1 19.68 ? CZ2 TCR 1005 Q 1 HETATM 11 C CZ3 TCR . . . GA 9 223.572 186.677 312.28 1 19.68 ? CZ3 TCR 1005 Q 1 HETATM 12 C CH2 TCR . . . GA 9 224.894 186.667 311.823 1 19.68 ? CH2 TCR 1005 Q 1 HETATM 13 C C9 TCR . . . GA 9 224.047 192.624 311.253 1 19.68 ? C9 TCR 1005 Q 1 HETATM 14 C C TCR . . . GA 9 220.492 193.083 312.384 1 19.68 ? C TCR 1005 Q 1 HETATM 15 O OXT TCR . . . GA 9 220.621 194.196 312.957 1 19.68 ? OXT TCR 1005 Q 1 HETATM 16 O O1 TCR . . . GA 9 219.397 192.507 312.28 1 19.68 ? O1 TCR 1005 Q 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #