data_9AXH
#
_model_server_result.job_id            DPyaRTsyKMrJAjHtQeQXyg 
_model_server_result.datetime_utc      '2024-11-07 21:44:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9axh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":901}' 
#
_entry.id    9AXH 
#
_exptl.entry_id    9AXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.25 
_cell.angle_gamma         90 
_cell.entry_id            9AXH 
_cell.length_a            249.87 
_cell.length_b            67.08 
_cell.length_c            74.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 K N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 160 A ASN 195 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc2 A OD2 ASP 173 A ASP 208 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc3 F O1B ANP . A ANP 402 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc4 F O1A ANP . A ANP 402 1_555 G MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc5 G MG MG . A MG 403 1_555 R O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc6 G MG MG . A MG 403 1_555 R O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
metalc ? metalc7 B OD1 ASN 160 B ASN 195 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc8 B OD2 ASP 173 B ASP 208 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc9 I O2B ANP . B ANP 402 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc10 I O1A ANP . B ANP 402 1_555 J MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc11 J MG MG . B MG 403 1_555 S O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc12 J MG MG . B MG 403 1_555 S O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
metalc ? metalc13 C OD1 ASN 139 C ASN 738 1_555 L MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc14 C OD2 ASP 151 C ASP 750 1_555 L MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc15 K O1B ANP . C ANP 901 1_555 L MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc16 K O1A ANP . C ANP 901 1_555 L MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc17 L MG MG . C MG 902 1_555 T O HOH . C HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc18 L MG MG . C MG 902 1_555 T O HOH . C HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc19 D OD1 ASN 139 D ASN 738 1_555 P MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc20 D OD2 ASP 151 D ASP 750 1_555 P MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc21 O O2B ANP . D ANP 901 1_555 P MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc22 O O1A ANP . D ANP 901 1_555 P MG MG . D MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc23 P MG MG . D MG 902 1_555 U O HOH . D HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc24 P MG MG . D MG 902 1_555 U O HOH . D HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 68 n n 
PG O2G ANP sing 69 n n 
PG O3G ANP sing 70 n n 
PG N3B ANP sing 71 n n 
O2G HOG2 ANP sing 72 n n 
O3G HOG3 ANP sing 73 n n 
PB O1B ANP doub 74 n n 
PB O2B ANP sing 75 n n 
PB N3B ANP sing 76 n n 
PB O3A ANP sing 77 n n 
O2B HOB2 ANP sing 78 n n 
N3B HNB1 ANP sing 79 n n 
PA O1A ANP doub 80 n n 
PA O2A ANP sing 81 n n 
PA O3A ANP sing 82 n n 
PA O5' ANP sing 83 n n 
O2A HOA2 ANP sing 84 n n 
O5' C5' ANP sing 85 n n 
C5' C4' ANP sing 86 n n 
C5' "H5'1" ANP sing 87 n n 
C5' "H5'2" ANP sing 88 n n 
C4' O4' ANP sing 89 n n 
C4' C3' ANP sing 90 n n 
C4' H4' ANP sing 91 n n 
O4' C1' ANP sing 92 n n 
C3' O3' ANP sing 93 n n 
C3' C2' ANP sing 94 n n 
C3' H3' ANP sing 95 n n 
O3' HO3' ANP sing 96 n n 
C2' O2' ANP sing 97 n n 
C2' C1' ANP sing 98 n n 
C2' H2' ANP sing 99 n n 
O2' HO2' ANP sing 100 n n 
C1' N9 ANP sing 101 n n 
C1' H1' ANP sing 102 n n 
N9 C8 ANP sing 103 n y 
N9 C4 ANP sing 104 n y 
C8 N7 ANP doub 105 n y 
C8 H8 ANP sing 106 n n 
N7 C5 ANP sing 107 n y 
C5 C6 ANP sing 108 n y 
C5 C4 ANP doub 109 n y 
C6 N6 ANP sing 110 n n 
C6 N1 ANP doub 111 n y 
N6 HN61 ANP sing 112 n n 
N6 HN62 ANP sing 113 n n 
N1 C2 ANP sing 114 n y 
C2 N3 ANP doub 115 n y 
C2 H2 ANP sing 116 n n 
N3 C4 ANP sing 117 n y 
#
_atom_sites.entry_id                     9AXH 
_atom_sites.fract_transf_matrix[1][1]    0.004002 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000017 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014908 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 A1AHE A 1 401 401 A1AHE 628 . 
F 4 ANP A 1 402 1 ANP ANP . 
G 5 MG A 1 403 1 MG MG . 
H 3 A1AHE B 1 401 401 A1AHE 628 . 
I 4 ANP B 1 402 2 ANP ANP . 
J 5 MG B 1 403 2 MG MG . 
K 4 ANP C 1 901 3 ANP ANP . 
L 5 MG C 1 902 3 MG MG . 
M 6 EDO C 1 903 1 EDO EDO . 
N 7 CL C 1 904 1 CL CL . 
O 4 ANP D 1 901 4 ANP ANP . 
P 5 MG D 1 902 4 MG MG . 
Q 7 CL D 1 903 2 CL CL . 
R 8 HOH A 1 501 10 HOH HOH . 
R 8 HOH A 2 502 9 HOH HOH . 
S 8 HOH B 1 501 4 HOH HOH . 
S 8 HOH B 2 502 3 HOH HOH . 
S 8 HOH B 3 503 5 HOH HOH . 
S 8 HOH B 4 504 6 HOH HOH . 
T 8 HOH C 1 1001 2 HOH HOH . 
T 8 HOH C 2 1002 1 HOH HOH . 
U 8 HOH D 1 1001 7 HOH HOH . 
U 8 HOH D 2 1002 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . K 4 43.479 13.756 -7.408 1 90.83 ? PG ANP 901 C 1 
HETATM 2 O O1G ANP . . . K 4 42.145 13.985 -6.772 1 110.54 ? O1G ANP 901 C 1 
HETATM 3 O O2G ANP . . . K 4 44.55 14.635 -6.658 1 96.79 ? O2G ANP 901 C 1 
HETATM 4 O O3G ANP . . . K 4 43.431 14.198 -8.925 1 101.94 ? O3G ANP 901 C 1 
HETATM 5 P PB ANP . . . K 4 44.959 11.676 -8.501 1 91.27 ? PB ANP 901 C 1 
HETATM 6 O O1B ANP . . . K 4 46.037 12.708 -8.563 1 90.11 ? O1B ANP 901 C 1 
HETATM 7 O O2B ANP . . . K 4 45.586 10.295 -8.15 1 89.63 ? O2B ANP 901 C 1 
HETATM 8 N N3B ANP . . . K 4 43.878 12.112 -7.294 1 88.38 ? N3B ANP 901 C 1 
HETATM 9 P PA ANP . . . K 4 44.618 12.213 -11.257 1 99.28 ? PA ANP 901 C 1 
HETATM 10 O O1A ANP . . . K 4 45.852 13.035 -11.211 1 92.43 ? O1A ANP 901 C 1 
HETATM 11 O O2A ANP . . . K 4 43.398 13.013 -11.725 1 109.32 ? O2A ANP 901 C 1 
HETATM 12 O O3A ANP . . . K 4 44.195 11.554 -9.86 1 96.88 ? O3A ANP 901 C 1 
HETATM 13 O O5' ANP . . . K 4 44.897 11.004 -12.244 1 98.38 ? O5' ANP 901 C 1 
HETATM 14 C C5' ANP . . . K 4 43.963 9.908 -12.411 1 101.58 ? C5' ANP 901 C 1 
HETATM 15 C C4' ANP . . . K 4 44.714 8.595 -12.389 1 99.23 ? C4' ANP 901 C 1 
HETATM 16 O O4' ANP . . . K 4 45.75 8.605 -13.398 1 90.93 ? O4' ANP 901 C 1 
HETATM 17 C C3' ANP . . . K 4 45.401 8.245 -11.068 1 91.82 ? C3' ANP 901 C 1 
HETATM 18 O O3' ANP . . . K 4 45.315 6.854 -10.788 1 101.33 ? O3' ANP 901 C 1 
HETATM 19 C C2' ANP . . . K 4 46.853 8.648 -11.316 1 89.98 ? C2' ANP 901 C 1 
HETATM 20 O O2' ANP . . . K 4 47.719 7.856 -10.512 1 93.57 ? O2' ANP 901 C 1 
HETATM 21 C C1' ANP . . . K 4 47.005 8.336 -12.805 1 84.48 ? C1' ANP 901 C 1 
HETATM 22 N N9 ANP . . . K 4 48.019 9.146 -13.476 1 85.93 ? N9 ANP 901 C 1 
HETATM 23 C C8 ANP . . . K 4 48.15 10.509 -13.444 1 89.18 ? C8 ANP 901 C 1 
HETATM 24 N N7 ANP . . . K 4 49.169 10.968 -14.134 1 79.75 ? N7 ANP 901 C 1 
HETATM 25 C C5 ANP . . . K 4 49.749 9.818 -14.653 1 84.02 ? C5 ANP 901 C 1 
HETATM 26 C C6 ANP . . . K 4 50.876 9.618 -15.479 1 78.7 ? C6 ANP 901 C 1 
HETATM 27 N N6 ANP . . . K 4 51.645 10.605 -15.942 1 72.45 ? N6 ANP 901 C 1 
HETATM 28 N N1 ANP . . . K 4 51.184 8.344 -15.814 1 84.9 ? N1 ANP 901 C 1 
HETATM 29 C C2 ANP . . . K 4 50.418 7.351 -15.353 1 85.53 ? C2 ANP 901 C 1 
HETATM 30 N N3 ANP . . . K 4 49.338 7.421 -14.572 1 81.22 ? N3 ANP 901 C 1 
HETATM 31 C C4 ANP . . . K 4 49.055 8.691 -14.256 1 84.78 ? C4 ANP 901 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#