data_9AXM # _model_server_result.job_id V6Wwm41JXPhdZj7id9-owA _model_server_result.datetime_utc '2024-11-26 10:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9axm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 9AXM # _exptl.entry_id 9AXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.464 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AXM _cell.length_a 80.209 _cell.length_b 173.429 _cell.length_c 187.769 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,O,P 1 1 C,D,K,L,M,N,Q,R 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 80.209 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 160 A ASN 195 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A OD2 ASP 173 A ASP 208 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc3 F MG MG . A MG 402 1_555 G O2B ANP . A ANP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc4 F MG MG . A MG 402 1_555 G O2G ANP . A ANP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 F MG MG . A MG 402 1_555 G O2A ANP . A ANP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc6 F MG MG . A MG 402 1_555 O O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 B OD1 ASN 138 B ASN 434 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 B OD2 ASP 151 B ASP 447 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc9 H MG MG . B MG 601 1_555 I O2G ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc10 H MG MG . B MG 601 1_555 I O2B ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc11 H MG MG . B MG 601 1_555 I O2A ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc12 H MG MG . B MG 601 1_555 P O HOH . B HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? # _chem_comp.formula 'C22 H18 F2 N4 O5 S' _chem_comp.formula_weight 488.464 _chem_comp.id A1AHE _chem_comp.mon_nstd_flag . _chem_comp.name "N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 A1AHE sing 1 n n N02 S03 A1AHE sing 2 n n O05 S03 A1AHE doub 3 n n S03 O04 A1AHE doub 4 n n S03 N06 A1AHE sing 5 n n N06 C07 A1AHE sing 6 n n N08 C07 A1AHE doub 7 n y N08 C09 A1AHE sing 8 n y C15 C14 A1AHE sing 9 n n C07 C33 A1AHE sing 10 n y C09 C10 A1AHE doub 11 n y C17 C18 A1AHE doub 12 n y C17 C16 A1AHE sing 13 n y C33 F34 A1AHE sing 14 n n C33 C11 A1AHE doub 15 n y C10 C11 A1AHE sing 16 n y C18 C19 A1AHE sing 17 n y C14 C16 A1AHE sing 18 n n C14 C13 A1AHE doub 19 n n C11 C12 A1AHE sing 20 n n C16 C29 A1AHE doub 21 n y C12 C13 A1AHE sing 22 n n C23 N22 A1AHE doub 23 n y C23 C24 A1AHE sing 24 n y N22 C21 A1AHE sing 25 n y C13 C31 A1AHE sing 26 n n C19 O20 A1AHE sing 27 n n C19 C28 A1AHE doub 28 n y C24 C25 A1AHE doub 29 n y C21 O20 A1AHE sing 30 n n C21 C26 A1AHE doub 31 n y C29 C28 A1AHE sing 32 n y C29 O30 A1AHE sing 33 n n C25 C26 A1AHE sing 34 n y C26 F27 A1AHE sing 35 n n C31 O30 A1AHE sing 36 n n C31 O32 A1AHE doub 37 n n C10 H1 A1AHE sing 38 n n C15 H3 A1AHE sing 39 n n C15 H4 A1AHE sing 40 n n C15 H5 A1AHE sing 41 n n C17 H6 A1AHE sing 42 n n C18 H7 A1AHE sing 43 n n C23 H8 A1AHE sing 44 n n C24 H9 A1AHE sing 45 n n C25 H10 A1AHE sing 46 n n C28 H11 A1AHE sing 47 n n C01 H12 A1AHE sing 48 n n C01 H13 A1AHE sing 49 n n C01 H14 A1AHE sing 50 n n C09 H15 A1AHE sing 51 n n C12 H16 A1AHE sing 52 n n C12 H17 A1AHE sing 53 n n N02 H19 A1AHE sing 54 n n N06 H20 A1AHE sing 55 n n # _atom_sites.entry_id 9AXM _atom_sites.fract_transf_matrix[1][1] 0.012467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A1AHE A 1 401 401 A1AHE 628 . F 4 MG A 1 402 2 MG MG . G 5 ANP A 1 403 2 ANP ANP . H 4 MG B 1 601 1 MG MG . I 5 ANP B 1 602 1 ANP ANP . J 6 EDO B 1 603 1 EDO EDO . K 3 A1AHE C 1 401 401 A1AHE 628 . L 7 GOL C 1 402 1 GOL GOL . M 7 GOL D 1 601 2 GOL GOL . N 7 GOL D 1 602 3 GOL GOL . O 8 HOH A 1 501 99 HOH HOH . O 8 HOH A 2 502 61 HOH HOH . O 8 HOH A 3 503 89 HOH HOH . O 8 HOH A 4 504 76 HOH HOH . O 8 HOH A 5 505 38 HOH HOH . O 8 HOH A 6 506 69 HOH HOH . O 8 HOH A 7 507 81 HOH HOH . O 8 HOH A 8 508 37 HOH HOH . O 8 HOH A 9 509 1 HOH HOH . O 8 HOH A 10 510 9 HOH HOH . O 8 HOH A 11 511 64 HOH HOH . O 8 HOH A 12 512 39 HOH HOH . O 8 HOH A 13 513 63 HOH HOH . O 8 HOH A 14 514 54 HOH HOH . O 8 HOH A 15 515 45 HOH HOH . O 8 HOH A 16 516 40 HOH HOH . O 8 HOH A 17 517 60 HOH HOH . O 8 HOH A 18 518 118 HOH HOH . O 8 HOH A 19 519 62 HOH HOH . O 8 HOH A 20 520 92 HOH HOH . O 8 HOH A 21 521 90 HOH HOH . O 8 HOH A 22 522 117 HOH HOH . O 8 HOH A 23 523 91 HOH HOH . P 8 HOH B 1 701 19 HOH HOH . P 8 HOH B 2 702 22 HOH HOH . P 8 HOH B 3 703 26 HOH HOH . P 8 HOH B 4 704 4 HOH HOH . P 8 HOH B 5 705 101 HOH HOH . P 8 HOH B 6 706 7 HOH HOH . P 8 HOH B 7 707 115 HOH HOH . P 8 HOH B 8 708 2 HOH HOH . P 8 HOH B 9 709 78 HOH HOH . P 8 HOH B 10 710 94 HOH HOH . P 8 HOH B 11 711 28 HOH HOH . P 8 HOH B 12 712 65 HOH HOH . P 8 HOH B 13 713 112 HOH HOH . P 8 HOH B 14 714 5 HOH HOH . P 8 HOH B 15 715 10 HOH HOH . P 8 HOH B 16 716 43 HOH HOH . P 8 HOH B 17 717 44 HOH HOH . P 8 HOH B 18 718 120 HOH HOH . P 8 HOH B 19 719 20 HOH HOH . P 8 HOH B 20 720 35 HOH HOH . P 8 HOH B 21 721 16 HOH HOH . P 8 HOH B 22 722 46 HOH HOH . P 8 HOH B 23 723 55 HOH HOH . P 8 HOH B 24 724 23 HOH HOH . P 8 HOH B 25 725 12 HOH HOH . P 8 HOH B 26 726 48 HOH HOH . P 8 HOH B 27 727 59 HOH HOH . P 8 HOH B 28 728 11 HOH HOH . P 8 HOH B 29 729 57 HOH HOH . P 8 HOH B 30 730 41 HOH HOH . P 8 HOH B 31 731 49 HOH HOH . P 8 HOH B 32 732 116 HOH HOH . P 8 HOH B 33 733 6 HOH HOH . P 8 HOH B 34 734 21 HOH HOH . P 8 HOH B 35 735 80 HOH HOH . P 8 HOH B 36 736 98 HOH HOH . P 8 HOH B 37 737 103 HOH HOH . P 8 HOH B 38 738 96 HOH HOH . P 8 HOH B 39 739 100 HOH HOH . P 8 HOH B 40 740 67 HOH HOH . Q 8 HOH C 1 501 109 HOH HOH . Q 8 HOH C 2 502 82 HOH HOH . Q 8 HOH C 3 503 34 HOH HOH . Q 8 HOH C 4 504 119 HOH HOH . Q 8 HOH C 5 505 8 HOH HOH . Q 8 HOH C 6 506 84 HOH HOH . Q 8 HOH C 7 507 70 HOH HOH . Q 8 HOH C 8 508 110 HOH HOH . Q 8 HOH C 9 509 3 HOH HOH . Q 8 HOH C 10 510 33 HOH HOH . Q 8 HOH C 11 511 31 HOH HOH . Q 8 HOH C 12 512 66 HOH HOH . Q 8 HOH C 13 513 25 HOH HOH . Q 8 HOH C 14 514 88 HOH HOH . Q 8 HOH C 15 515 77 HOH HOH . Q 8 HOH C 16 516 53 HOH HOH . Q 8 HOH C 17 517 93 HOH HOH . Q 8 HOH C 18 518 52 HOH HOH . Q 8 HOH C 19 519 32 HOH HOH . Q 8 HOH C 20 520 50 HOH HOH . Q 8 HOH C 21 521 97 HOH HOH . R 8 HOH D 1 701 111 HOH HOH . R 8 HOH D 2 702 104 HOH HOH . R 8 HOH D 3 703 18 HOH HOH . R 8 HOH D 4 704 56 HOH HOH . R 8 HOH D 5 705 51 HOH HOH . R 8 HOH D 6 706 75 HOH HOH . R 8 HOH D 7 707 15 HOH HOH . R 8 HOH D 8 708 47 HOH HOH . R 8 HOH D 9 709 113 HOH HOH . R 8 HOH D 10 710 42 HOH HOH . R 8 HOH D 11 711 29 HOH HOH . R 8 HOH D 12 712 17 HOH HOH . R 8 HOH D 13 713 73 HOH HOH . R 8 HOH D 14 714 71 HOH HOH . R 8 HOH D 15 715 114 HOH HOH . R 8 HOH D 16 716 86 HOH HOH . R 8 HOH D 17 717 30 HOH HOH . R 8 HOH D 18 718 36 HOH HOH . R 8 HOH D 19 719 24 HOH HOH . R 8 HOH D 20 720 105 HOH HOH . R 8 HOH D 21 721 68 HOH HOH . R 8 HOH D 22 722 79 HOH HOH . R 8 HOH D 23 723 72 HOH HOH . R 8 HOH D 24 724 74 HOH HOH . R 8 HOH D 25 725 87 HOH HOH . R 8 HOH D 26 726 14 HOH HOH . R 8 HOH D 27 727 85 HOH HOH . R 8 HOH D 28 728 13 HOH HOH . R 8 HOH D 29 729 107 HOH HOH . R 8 HOH D 30 730 108 HOH HOH . R 8 HOH D 31 731 106 HOH HOH . R 8 HOH D 32 732 95 HOH HOH . R 8 HOH D 33 733 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1AHE . . . E 3 -5.4 40.323 -26.26 1 39.7 ? C10 A1AHE 401 A 1 HETATM 2 C C11 A1AHE . . . E 3 -4.429 41.317 -26.397 1 52.21 ? C11 A1AHE 401 A 1 HETATM 3 C C14 A1AHE . . . E 3 -4.513 42.138 -23.027 1 54.41 ? C14 A1AHE 401 A 1 HETATM 4 C C15 A1AHE . . . E 3 -3.281 41.303 -23.055 1 48.13 ? C15 A1AHE 401 A 1 HETATM 5 C C16 A1AHE . . . E 3 -5.246 42.162 -21.753 1 48.8 ? C16 A1AHE 401 A 1 HETATM 6 C C17 A1AHE . . . E 3 -4.821 41.573 -20.544 1 52.11 ? C17 A1AHE 401 A 1 HETATM 7 C C18 A1AHE . . . E 3 -5.565 41.635 -19.378 1 55.1 ? C18 A1AHE 401 A 1 HETATM 8 C C19 A1AHE . . . E 3 -6.802 42.297 -19.34 1 51.6 ? C19 A1AHE 401 A 1 HETATM 9 C C23 A1AHE . . . E 3 -9.855 39.736 -18.799 1 46.45 ? C23 A1AHE 401 A 1 HETATM 10 C C24 A1AHE . . . E 3 -10.766 39.782 -17.738 1 53.96 ? C24 A1AHE 401 A 1 HETATM 11 C C25 A1AHE . . . E 3 -10.56 40.73 -16.748 1 51.41 ? C25 A1AHE 401 A 1 HETATM 12 C C26 A1AHE . . . E 3 -9.455 41.589 -16.863 1 47.32 ? C26 A1AHE 401 A 1 HETATM 13 C C28 A1AHE . . . E 3 -7.274 42.898 -20.503 1 47.2 ? C28 A1AHE 401 A 1 HETATM 14 C C29 A1AHE . . . E 3 -6.48 42.813 -21.68 1 52.45 ? C29 A1AHE 401 A 1 HETATM 15 C C01 A1AHE . . . E 3 -1.749 36.187 -29.076 1 60.03 ? C01 A1AHE 401 A 1 HETATM 16 C C07 A1AHE . . . E 3 -3.373 39.8 -28.081 1 46.83 ? C07 A1AHE 401 A 1 HETATM 17 C C09 A1AHE . . . E 3 -5.317 39.145 -27.017 1 43.4 ? C09 A1AHE 401 A 1 HETATM 18 C C12 A1AHE . . . E 3 -4.503 42.607 -25.578 1 47.05 ? C12 A1AHE 401 A 1 HETATM 19 C C13 A1AHE . . . E 3 -5.09 42.605 -24.17 1 58.65 ? C13 A1AHE 401 A 1 HETATM 20 C C21 A1AHE . . . E 3 -8.576 41.481 -17.972 1 45.97 ? C21 A1AHE 401 A 1 HETATM 21 C C31 A1AHE . . . E 3 -6.34 43.338 -24.001 1 51.43 ? C31 A1AHE 401 A 1 HETATM 22 C C33 A1AHE . . . E 3 -3.407 41.021 -27.333 1 45.37 ? C33 A1AHE 401 A 1 HETATM 23 F F27 A1AHE . . . E 3 -9.272 42.492 -15.905 1 51 ? F27 A1AHE 401 A 1 HETATM 24 F F34 A1AHE . . . E 3 -2.441 41.905 -27.531 1 56.03 ? F34 A1AHE 401 A 1 HETATM 25 N N02 A1AHE . . . E 3 -2.823 36.912 -29.792 1 60.01 ? N02 A1AHE 401 A 1 HETATM 26 N N06 A1AHE . . . E 3 -2.368 39.447 -29.036 1 58.58 ? N06 A1AHE 401 A 1 HETATM 27 N N08 A1AHE . . . E 3 -4.348 38.863 -27.906 1 46.14 ? N08 A1AHE 401 A 1 HETATM 28 N N22 A1AHE . . . E 3 -8.785 40.548 -18.935 1 52.55 ? N22 A1AHE 401 A 1 HETATM 29 O O04 A1AHE . . . E 3 -1.416 38.378 -31.139 1 61.46 ? O04 A1AHE 401 A 1 HETATM 30 O O05 A1AHE . . . E 3 -3.826 38.838 -30.997 1 59.38 ? O05 A1AHE 401 A 1 HETATM 31 O O20 A1AHE . . . E 3 -7.478 42.306 -18.119 1 59.87 ? O20 A1AHE 401 A 1 HETATM 32 O O30 A1AHE . . . E 3 -6.994 43.418 -22.782 1 47.43 ? O30 A1AHE 401 A 1 HETATM 33 O O32 A1AHE . . . E 3 -6.938 43.947 -24.865 1 49.93 ? O32 A1AHE 401 A 1 HETATM 34 S S03 A1AHE . . . E 3 -2.612 38.455 -30.391 1 55.54 ? S03 A1AHE 401 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 34 #