data_9AXM
#
_model_server_result.job_id            9yxwKqii7HyaH7_0KXSnGA 
_model_server_result.datetime_utc      '2024-11-07 23:34:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9axm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":403}' 
#
_entry.id    9AXM 
#
_exptl.entry_id    9AXM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9AXM 
_cell.length_a            80.209 
_cell.length_b            173.429 
_cell.length_c            187.769 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AXM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,O,P 1 1 
C,D,K,L,M,N,Q,R 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 80.209 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 160 A ASN 195 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc2 A OD2 ASP 173 A ASP 208 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc3 F MG MG . A MG 402 1_555 G O2B ANP . A ANP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc4 F MG MG . A MG 402 1_555 G O2G ANP . A ANP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc5 F MG MG . A MG 402 1_555 G O2A ANP . A ANP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc6 F MG MG . A MG 402 1_555 O O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc7 B OD1 ASN 138 B ASN 434 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc8 B OD2 ASP 151 B ASP 447 1_555 H MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc9 H MG MG . B MG 601 1_555 I O2G ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc10 H MG MG . B MG 601 1_555 I O2B ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc11 H MG MG . B MG 601 1_555 I O2A ANP . B ANP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc12 H MG MG . B MG 601 1_555 P O HOH . B HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 68 n n 
PG O2G ANP sing 69 n n 
PG O3G ANP sing 70 n n 
PG N3B ANP sing 71 n n 
O2G HOG2 ANP sing 72 n n 
O3G HOG3 ANP sing 73 n n 
PB O1B ANP doub 74 n n 
PB O2B ANP sing 75 n n 
PB N3B ANP sing 76 n n 
PB O3A ANP sing 77 n n 
O2B HOB2 ANP sing 78 n n 
N3B HNB1 ANP sing 79 n n 
PA O1A ANP doub 80 n n 
PA O2A ANP sing 81 n n 
PA O3A ANP sing 82 n n 
PA O5' ANP sing 83 n n 
O2A HOA2 ANP sing 84 n n 
O5' C5' ANP sing 85 n n 
C5' C4' ANP sing 86 n n 
C5' "H5'1" ANP sing 87 n n 
C5' "H5'2" ANP sing 88 n n 
C4' O4' ANP sing 89 n n 
C4' C3' ANP sing 90 n n 
C4' H4' ANP sing 91 n n 
O4' C1' ANP sing 92 n n 
C3' O3' ANP sing 93 n n 
C3' C2' ANP sing 94 n n 
C3' H3' ANP sing 95 n n 
O3' HO3' ANP sing 96 n n 
C2' O2' ANP sing 97 n n 
C2' C1' ANP sing 98 n n 
C2' H2' ANP sing 99 n n 
O2' HO2' ANP sing 100 n n 
C1' N9 ANP sing 101 n n 
C1' H1' ANP sing 102 n n 
N9 C8 ANP sing 103 n y 
N9 C4 ANP sing 104 n y 
C8 N7 ANP doub 105 n y 
C8 H8 ANP sing 106 n n 
N7 C5 ANP sing 107 n y 
C5 C6 ANP sing 108 n y 
C5 C4 ANP doub 109 n y 
C6 N6 ANP sing 110 n n 
C6 N1 ANP doub 111 n y 
N6 HN61 ANP sing 112 n n 
N6 HN62 ANP sing 113 n n 
N1 C2 ANP sing 114 n y 
C2 N3 ANP doub 115 n y 
C2 H2 ANP sing 116 n n 
N3 C4 ANP sing 117 n y 
#
_atom_sites.entry_id                     9AXM 
_atom_sites.fract_transf_matrix[1][1]    0.012467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005326 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 A1AHE A 1 401 401 A1AHE 628 . 
F 4 MG A 1 402 2 MG MG . 
G 5 ANP A 1 403 2 ANP ANP . 
H 4 MG B 1 601 1 MG MG . 
I 5 ANP B 1 602 1 ANP ANP . 
J 6 EDO B 1 603 1 EDO EDO . 
K 3 A1AHE C 1 401 401 A1AHE 628 . 
L 7 GOL C 1 402 1 GOL GOL . 
M 7 GOL D 1 601 2 GOL GOL . 
N 7 GOL D 1 602 3 GOL GOL . 
O 8 HOH A 1 501 99 HOH HOH . 
O 8 HOH A 2 502 61 HOH HOH . 
O 8 HOH A 3 503 89 HOH HOH . 
O 8 HOH A 4 504 76 HOH HOH . 
O 8 HOH A 5 505 38 HOH HOH . 
O 8 HOH A 6 506 69 HOH HOH . 
O 8 HOH A 7 507 81 HOH HOH . 
O 8 HOH A 8 508 37 HOH HOH . 
O 8 HOH A 9 509 1 HOH HOH . 
O 8 HOH A 10 510 9 HOH HOH . 
O 8 HOH A 11 511 64 HOH HOH . 
O 8 HOH A 12 512 39 HOH HOH . 
O 8 HOH A 13 513 63 HOH HOH . 
O 8 HOH A 14 514 54 HOH HOH . 
O 8 HOH A 15 515 45 HOH HOH . 
O 8 HOH A 16 516 40 HOH HOH . 
O 8 HOH A 17 517 60 HOH HOH . 
O 8 HOH A 18 518 118 HOH HOH . 
O 8 HOH A 19 519 62 HOH HOH . 
O 8 HOH A 20 520 92 HOH HOH . 
O 8 HOH A 21 521 90 HOH HOH . 
O 8 HOH A 22 522 117 HOH HOH . 
O 8 HOH A 23 523 91 HOH HOH . 
P 8 HOH B 1 701 19 HOH HOH . 
P 8 HOH B 2 702 22 HOH HOH . 
P 8 HOH B 3 703 26 HOH HOH . 
P 8 HOH B 4 704 4 HOH HOH . 
P 8 HOH B 5 705 101 HOH HOH . 
P 8 HOH B 6 706 7 HOH HOH . 
P 8 HOH B 7 707 115 HOH HOH . 
P 8 HOH B 8 708 2 HOH HOH . 
P 8 HOH B 9 709 78 HOH HOH . 
P 8 HOH B 10 710 94 HOH HOH . 
P 8 HOH B 11 711 28 HOH HOH . 
P 8 HOH B 12 712 65 HOH HOH . 
P 8 HOH B 13 713 112 HOH HOH . 
P 8 HOH B 14 714 5 HOH HOH . 
P 8 HOH B 15 715 10 HOH HOH . 
P 8 HOH B 16 716 43 HOH HOH . 
P 8 HOH B 17 717 44 HOH HOH . 
P 8 HOH B 18 718 120 HOH HOH . 
P 8 HOH B 19 719 20 HOH HOH . 
P 8 HOH B 20 720 35 HOH HOH . 
P 8 HOH B 21 721 16 HOH HOH . 
P 8 HOH B 22 722 46 HOH HOH . 
P 8 HOH B 23 723 55 HOH HOH . 
P 8 HOH B 24 724 23 HOH HOH . 
P 8 HOH B 25 725 12 HOH HOH . 
P 8 HOH B 26 726 48 HOH HOH . 
P 8 HOH B 27 727 59 HOH HOH . 
P 8 HOH B 28 728 11 HOH HOH . 
P 8 HOH B 29 729 57 HOH HOH . 
P 8 HOH B 30 730 41 HOH HOH . 
P 8 HOH B 31 731 49 HOH HOH . 
P 8 HOH B 32 732 116 HOH HOH . 
P 8 HOH B 33 733 6 HOH HOH . 
P 8 HOH B 34 734 21 HOH HOH . 
P 8 HOH B 35 735 80 HOH HOH . 
P 8 HOH B 36 736 98 HOH HOH . 
P 8 HOH B 37 737 103 HOH HOH . 
P 8 HOH B 38 738 96 HOH HOH . 
P 8 HOH B 39 739 100 HOH HOH . 
P 8 HOH B 40 740 67 HOH HOH . 
Q 8 HOH C 1 501 109 HOH HOH . 
Q 8 HOH C 2 502 82 HOH HOH . 
Q 8 HOH C 3 503 34 HOH HOH . 
Q 8 HOH C 4 504 119 HOH HOH . 
Q 8 HOH C 5 505 8 HOH HOH . 
Q 8 HOH C 6 506 84 HOH HOH . 
Q 8 HOH C 7 507 70 HOH HOH . 
Q 8 HOH C 8 508 110 HOH HOH . 
Q 8 HOH C 9 509 3 HOH HOH . 
Q 8 HOH C 10 510 33 HOH HOH . 
Q 8 HOH C 11 511 31 HOH HOH . 
Q 8 HOH C 12 512 66 HOH HOH . 
Q 8 HOH C 13 513 25 HOH HOH . 
Q 8 HOH C 14 514 88 HOH HOH . 
Q 8 HOH C 15 515 77 HOH HOH . 
Q 8 HOH C 16 516 53 HOH HOH . 
Q 8 HOH C 17 517 93 HOH HOH . 
Q 8 HOH C 18 518 52 HOH HOH . 
Q 8 HOH C 19 519 32 HOH HOH . 
Q 8 HOH C 20 520 50 HOH HOH . 
Q 8 HOH C 21 521 97 HOH HOH . 
R 8 HOH D 1 701 111 HOH HOH . 
R 8 HOH D 2 702 104 HOH HOH . 
R 8 HOH D 3 703 18 HOH HOH . 
R 8 HOH D 4 704 56 HOH HOH . 
R 8 HOH D 5 705 51 HOH HOH . 
R 8 HOH D 6 706 75 HOH HOH . 
R 8 HOH D 7 707 15 HOH HOH . 
R 8 HOH D 8 708 47 HOH HOH . 
R 8 HOH D 9 709 113 HOH HOH . 
R 8 HOH D 10 710 42 HOH HOH . 
R 8 HOH D 11 711 29 HOH HOH . 
R 8 HOH D 12 712 17 HOH HOH . 
R 8 HOH D 13 713 73 HOH HOH . 
R 8 HOH D 14 714 71 HOH HOH . 
R 8 HOH D 15 715 114 HOH HOH . 
R 8 HOH D 16 716 86 HOH HOH . 
R 8 HOH D 17 717 30 HOH HOH . 
R 8 HOH D 18 718 36 HOH HOH . 
R 8 HOH D 19 719 24 HOH HOH . 
R 8 HOH D 20 720 105 HOH HOH . 
R 8 HOH D 21 721 68 HOH HOH . 
R 8 HOH D 22 722 79 HOH HOH . 
R 8 HOH D 23 723 72 HOH HOH . 
R 8 HOH D 24 724 74 HOH HOH . 
R 8 HOH D 25 725 87 HOH HOH . 
R 8 HOH D 26 726 14 HOH HOH . 
R 8 HOH D 27 727 85 HOH HOH . 
R 8 HOH D 28 728 13 HOH HOH . 
R 8 HOH D 29 729 107 HOH HOH . 
R 8 HOH D 30 730 108 HOH HOH . 
R 8 HOH D 31 731 106 HOH HOH . 
R 8 HOH D 32 732 95 HOH HOH . 
R 8 HOH D 33 733 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . G 5 -0.346 36.372 -22.016 1 67.22 ? PG ANP 403 A 1 
HETATM 2 O O1G ANP . . . G 5 -0.436 35.993 -23.457 1 78.22 ? O1G ANP 403 A 1 
HETATM 3 O O2G ANP . . . G 5 -1.652 35.9 -21.277 1 58.22 ? O2G ANP 403 A 1 
HETATM 4 O O3G ANP . . . G 5 -0.21 37.941 -21.894 1 71.67 ? O3G ANP 403 A 1 
HETATM 5 P PB ANP . . . G 5 0.688 34.617 -20.067 1 62.34 ? PB ANP 403 A 1 
HETATM 6 O O1B ANP . . . G 5 1.258 33.267 -20.343 1 50.06 ? O1B ANP 403 A 1 
HETATM 7 O O2B ANP . . . G 5 -0.845 34.451 -19.886 1 52.41 ? O2B ANP 403 A 1 
HETATM 8 N N3B ANP . . . G 5 1.031 35.66 -21.336 1 75.64 ? N3B ANP 403 A 1 
HETATM 9 P PA ANP . . . G 5 0.629 36.384 -17.966 1 53.97 ? PA ANP 403 A 1 
HETATM 10 O O1A ANP . . . G 5 1.543 37.547 -17.889 1 68.21 ? O1A ANP 403 A 1 
HETATM 11 O O2A ANP . . . G 5 -0.713 36.682 -18.641 1 52.26 ? O2A ANP 403 A 1 
HETATM 12 O O3A ANP . . . G 5 1.308 35.183 -18.753 1 56.8 ? O3A ANP 403 A 1 
HETATM 13 O O5' ANP . . . G 5 0.441 35.81 -16.505 1 57.5 ? O5' ANP 403 A 1 
HETATM 14 C C5' ANP . . . G 5 1.469 34.994 -15.904 1 57.16 ? C5' ANP 403 A 1 
HETATM 15 C C4' ANP . . . G 5 0.82 34.062 -14.915 1 57.13 ? C4' ANP 403 A 1 
HETATM 16 O O4' ANP . . . G 5 0.07 34.833 -13.96 1 59.01 ? O4' ANP 403 A 1 
HETATM 17 C C3' ANP . . . G 5 -0.198 33.099 -15.51 1 62.29 ? C3' ANP 403 A 1 
HETATM 18 O O3' ANP . . . G 5 0.438 31.924 -16.001 1 65.78 ? O3' ANP 403 A 1 
HETATM 19 C C2' ANP . . . G 5 -1.112 32.792 -14.319 1 50.26 ? C2' ANP 403 A 1 
HETATM 20 O O2' ANP . . . G 5 -0.679 31.638 -13.609 1 59.92 ? O2' ANP 403 A 1 
HETATM 21 C C1' ANP . . . G 5 -0.985 34.046 -13.44 1 48.75 ? C1' ANP 403 A 1 
HETATM 22 N N9 ANP . . . G 5 -2.193 34.864 -13.397 1 50.33 ? N9 ANP 403 A 1 
HETATM 23 C C8 ANP . . . G 5 -2.609 35.778 -14.329 1 47.54 ? C8 ANP 403 A 1 
HETATM 24 N N7 ANP . . . G 5 -3.741 36.368 -14.03 1 52.86 ? N7 ANP 403 A 1 
HETATM 25 C C5 ANP . . . G 5 -4.097 35.8 -12.815 1 50.42 ? C5 ANP 403 A 1 
HETATM 26 C C6 ANP . . . G 5 -5.201 35.996 -11.963 1 52.56 ? C6 ANP 403 A 1 
HETATM 27 N N6 ANP . . . G 5 -6.191 36.855 -12.215 1 40.98 ? N6 ANP 403 A 1 
HETATM 28 N N1 ANP . . . G 5 -5.252 35.267 -10.825 1 47.36 ? N1 ANP 403 A 1 
HETATM 29 C C2 ANP . . . G 5 -4.264 34.405 -10.568 1 42.98 ? C2 ANP 403 A 1 
HETATM 30 N N3 ANP . . . G 5 -3.177 34.135 -11.295 1 44.15 ? N3 ANP 403 A 1 
HETATM 31 C C4 ANP . . . G 5 -3.152 34.87 -12.414 1 45.59 ? C4 ANP 403 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#