data_9AXO # _model_server_result.job_id WkGi5mKOPdBLl5zDggwgMA _model_server_result.datetime_utc '2025-01-12 01:02:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9axo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":301}' # _entry.id 9AXO # _exptl.entry_id 9AXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.471 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AXO _cell.length_a 60.519 _cell.length_b 60.519 _cell.length_c 259.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 147 H CYS 140 1_555 A SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A C PCA 1 H PCA 1 1_555 A N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C22 H28 N2 O' _chem_comp.formula_weight 336.471 _chem_comp.id 7V7 _chem_comp.mon_nstd_flag . _chem_comp.name N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 7V7 doub 1 n y C16 C15 7V7 sing 2 n y C17 C18 7V7 sing 3 n y C15 C14 7V7 doub 4 n y C18 C19 7V7 doub 5 n y C14 C19 7V7 sing 6 n y C14 C13 7V7 sing 7 n n C12 C13 7V7 sing 8 n n C12 N09 7V7 sing 9 n n C08 N09 7V7 sing 10 n n C08 C07 7V7 sing 11 n n N09 C10 7V7 sing 12 n n C10 C11 7V7 sing 13 n n O01 C02 7V7 doub 14 n n C07 C06 7V7 sing 15 n n C06 C11 7V7 sing 16 n n C06 N05 7V7 sing 17 n n C02 N05 7V7 sing 18 n n C02 C03 7V7 sing 19 n n N05 C20 7V7 sing 20 n n C04 C03 7V7 sing 21 n n C20 C21 7V7 doub 22 n y C20 C25 7V7 sing 23 n y C21 C22 7V7 sing 24 n y C25 C24 7V7 doub 25 n y C22 C23 7V7 doub 26 n y C24 C23 7V7 sing 27 n y C10 H102 7V7 sing 28 n n C10 H101 7V7 sing 29 n n C13 H131 7V7 sing 30 n n C13 H132 7V7 sing 31 n n C15 H151 7V7 sing 32 n n C17 H171 7V7 sing 33 n n C21 H211 7V7 sing 34 n n C22 H221 7V7 sing 35 n n C24 H241 7V7 sing 36 n n C03 H031 7V7 sing 37 n n C03 H032 7V7 sing 38 n n C04 H043 7V7 sing 39 n n C04 H041 7V7 sing 40 n n C04 H042 7V7 sing 41 n n C06 H061 7V7 sing 42 n n C07 H072 7V7 sing 43 n n C07 H071 7V7 sing 44 n n C08 H082 7V7 sing 45 n n C08 H081 7V7 sing 46 n n C11 H112 7V7 sing 47 n n C11 H111 7V7 sing 48 n n C12 H122 7V7 sing 49 n n C12 H121 7V7 sing 50 n n C16 H161 7V7 sing 51 n n C18 H181 7V7 sing 52 n n C19 H191 7V7 sing 53 n n C23 H231 7V7 sing 54 n n C25 H251 7V7 sing 55 n n # _atom_sites.entry_id 9AXO _atom_sites.fract_transf_matrix[1][1] 0.016524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL H 1 301 1 GOL GOL . D 3 GOL H 1 302 3 GOL GOL . E 3 GOL H 1 303 4 GOL GOL . F 3 GOL H 1 304 7 GOL GOL . G 3 GOL H 1 305 8 GOL GOL . H 3 GOL H 1 306 11 GOL GOL . I 3 GOL H 1 307 13 GOL GOL . J 3 GOL H 1 308 16 GOL GOL . K 3 GOL H 1 309 18 GOL GOL . L 3 GOL H 1 310 22 GOL GOL . M 4 7V7 L 1 301 301 7V7 7V7 . N 3 GOL L 1 302 9 GOL GOL . O 3 GOL L 1 303 10 GOL GOL . P 3 GOL L 1 304 19 GOL GOL . Q 3 GOL L 1 305 23 GOL GOL . R 5 HOH H 1 401 123 HOH HOH . R 5 HOH H 2 402 97 HOH HOH . R 5 HOH H 3 403 74 HOH HOH . R 5 HOH H 4 404 25 HOH HOH . R 5 HOH H 5 405 85 HOH HOH . R 5 HOH H 6 406 21 HOH HOH . R 5 HOH H 7 407 86 HOH HOH . R 5 HOH H 8 408 7 HOH HOH . R 5 HOH H 9 409 98 HOH HOH . R 5 HOH H 10 410 101 HOH HOH . R 5 HOH H 11 411 1 HOH HOH . R 5 HOH H 12 412 36 HOH HOH . R 5 HOH H 13 413 2 HOH HOH . R 5 HOH H 14 414 100 HOH HOH . R 5 HOH H 15 415 70 HOH HOH . R 5 HOH H 16 416 54 HOH HOH . R 5 HOH H 17 417 89 HOH HOH . R 5 HOH H 18 418 72 HOH HOH . R 5 HOH H 19 419 5 HOH HOH . R 5 HOH H 20 420 31 HOH HOH . R 5 HOH H 21 421 94 HOH HOH . R 5 HOH H 22 422 34 HOH HOH . R 5 HOH H 23 423 51 HOH HOH . R 5 HOH H 24 424 26 HOH HOH . R 5 HOH H 25 425 95 HOH HOH . R 5 HOH H 26 426 113 HOH HOH . R 5 HOH H 27 427 39 HOH HOH . R 5 HOH H 28 428 27 HOH HOH . R 5 HOH H 29 429 102 HOH HOH . R 5 HOH H 30 430 24 HOH HOH . R 5 HOH H 31 431 75 HOH HOH . R 5 HOH H 32 432 114 HOH HOH . R 5 HOH H 33 433 58 HOH HOH . R 5 HOH H 34 434 57 HOH HOH . R 5 HOH H 35 435 56 HOH HOH . R 5 HOH H 36 436 59 HOH HOH . R 5 HOH H 37 437 9 HOH HOH . R 5 HOH H 38 438 10 HOH HOH . R 5 HOH H 39 439 43 HOH HOH . R 5 HOH H 40 440 45 HOH HOH . R 5 HOH H 41 441 15 HOH HOH . R 5 HOH H 42 442 8 HOH HOH . R 5 HOH H 43 443 22 HOH HOH . R 5 HOH H 44 444 65 HOH HOH . R 5 HOH H 45 445 96 HOH HOH . R 5 HOH H 46 446 104 HOH HOH . R 5 HOH H 47 447 92 HOH HOH . R 5 HOH H 48 448 103 HOH HOH . R 5 HOH H 49 449 32 HOH HOH . R 5 HOH H 50 450 41 HOH HOH . R 5 HOH H 51 451 129 HOH HOH . R 5 HOH H 52 452 14 HOH HOH . R 5 HOH H 53 453 109 HOH HOH . R 5 HOH H 54 454 90 HOH HOH . R 5 HOH H 55 455 76 HOH HOH . R 5 HOH H 56 456 52 HOH HOH . R 5 HOH H 57 457 23 HOH HOH . R 5 HOH H 58 458 121 HOH HOH . R 5 HOH H 59 459 42 HOH HOH . R 5 HOH H 60 460 63 HOH HOH . R 5 HOH H 61 461 48 HOH HOH . R 5 HOH H 62 462 29 HOH HOH . R 5 HOH H 63 463 61 HOH HOH . R 5 HOH H 64 464 125 HOH HOH . R 5 HOH H 65 465 120 HOH HOH . R 5 HOH H 66 466 33 HOH HOH . R 5 HOH H 67 467 11 HOH HOH . R 5 HOH H 68 468 50 HOH HOH . R 5 HOH H 69 469 62 HOH HOH . R 5 HOH H 70 470 105 HOH HOH . R 5 HOH H 71 471 83 HOH HOH . R 5 HOH H 72 472 128 HOH HOH . R 5 HOH H 73 473 4 HOH HOH . R 5 HOH H 74 474 30 HOH HOH . R 5 HOH H 75 475 84 HOH HOH . R 5 HOH H 76 476 12 HOH HOH . R 5 HOH H 77 477 91 HOH HOH . R 5 HOH H 78 478 112 HOH HOH . S 5 HOH L 1 401 118 HOH HOH . S 5 HOH L 2 402 119 HOH HOH . S 5 HOH L 3 403 87 HOH HOH . S 5 HOH L 4 404 80 HOH HOH . S 5 HOH L 5 405 77 HOH HOH . S 5 HOH L 6 406 110 HOH HOH . S 5 HOH L 7 407 35 HOH HOH . S 5 HOH L 8 408 47 HOH HOH . S 5 HOH L 9 409 28 HOH HOH . S 5 HOH L 10 410 16 HOH HOH . S 5 HOH L 11 411 3 HOH HOH . S 5 HOH L 12 412 69 HOH HOH . S 5 HOH L 13 413 17 HOH HOH . S 5 HOH L 14 414 64 HOH HOH . S 5 HOH L 15 415 38 HOH HOH . S 5 HOH L 16 416 67 HOH HOH . S 5 HOH L 17 417 126 HOH HOH . S 5 HOH L 18 418 117 HOH HOH . S 5 HOH L 19 419 71 HOH HOH . S 5 HOH L 20 420 111 HOH HOH . S 5 HOH L 21 421 124 HOH HOH . S 5 HOH L 22 422 106 HOH HOH . S 5 HOH L 23 423 116 HOH HOH . S 5 HOH L 24 424 81 HOH HOH . S 5 HOH L 25 425 55 HOH HOH . S 5 HOH L 26 426 46 HOH HOH . S 5 HOH L 27 427 6 HOH HOH . S 5 HOH L 28 428 53 HOH HOH . S 5 HOH L 29 429 66 HOH HOH . S 5 HOH L 30 430 79 HOH HOH . S 5 HOH L 31 431 108 HOH HOH . S 5 HOH L 32 432 44 HOH HOH . S 5 HOH L 33 433 20 HOH HOH . S 5 HOH L 34 434 107 HOH HOH . S 5 HOH L 35 435 37 HOH HOH . S 5 HOH L 36 436 93 HOH HOH . S 5 HOH L 37 437 88 HOH HOH . S 5 HOH L 38 438 99 HOH HOH . S 5 HOH L 39 439 40 HOH HOH . S 5 HOH L 40 440 18 HOH HOH . S 5 HOH L 41 441 127 HOH HOH . S 5 HOH L 42 442 122 HOH HOH . S 5 HOH L 43 443 82 HOH HOH . S 5 HOH L 44 444 49 HOH HOH . S 5 HOH L 45 445 73 HOH HOH . S 5 HOH L 46 446 131 HOH HOH . S 5 HOH L 47 447 130 HOH HOH . S 5 HOH L 48 448 115 HOH HOH . S 5 HOH L 49 449 68 HOH HOH . S 5 HOH L 50 450 60 HOH HOH . S 5 HOH L 51 451 13 HOH HOH . S 5 HOH L 52 452 78 HOH HOH . S 5 HOH L 53 453 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7V7 . . . M 4 -26.907 0.808 1.341 1 58.58 ? C10 7V7 301 L 1 HETATM 2 C C13 7V7 . . . M 4 -29.123 -1.034 2.437 1 57.88 ? C13 7V7 301 L 1 HETATM 3 C C15 7V7 . . . M 4 -29.115 -3.419 3.214 1 62.53 ? C15 7V7 301 L 1 HETATM 4 C C17 7V7 . . . M 4 -31.18 -4.626 3.513 1 65.19 ? C17 7V7 301 L 1 HETATM 5 C C20 7V7 . . . M 4 -26.731 4.2 -1.77 1 53.91 ? C20 7V7 301 L 1 HETATM 6 C C21 7V7 . . . M 4 -27.095 5.232 -0.906 1 52.18 ? C21 7V7 301 L 1 HETATM 7 C C22 7V7 . . . M 4 -28.076 6.133 -1.301 1 51.78 ? C22 7V7 301 L 1 HETATM 8 C C24 7V7 . . . M 4 -28.285 5.012 -3.414 1 48.4 ? C24 7V7 301 L 1 HETATM 9 C C02 7V7 . . . M 4 -24.364 3.6 -1.655 1 51.61 ? C02 7V7 301 L 1 HETATM 10 C C03 7V7 . . . M 4 -24.056 4.942 -2.305 1 57.25 ? C03 7V7 301 L 1 HETATM 11 C C04 7V7 . . . M 4 -22.604 4.98 -2.706 1 57.11 ? C04 7V7 301 L 1 HETATM 12 C C06 7V7 . . . M 4 -26.066 1.97 -0.732 1 56.47 ? C06 7V7 301 L 1 HETATM 13 C C07 7V7 . . . M 4 -27.216 1.276 -1.501 1 56.72 ? C07 7V7 301 L 1 HETATM 14 C C08 7V7 . . . M 4 -27.556 -0.06 -0.797 1 64.73 ? C08 7V7 301 L 1 HETATM 15 C C11 7V7 . . . M 4 -26.528 2.17 0.75 1 51.44 ? C11 7V7 301 L 1 HETATM 16 C C12 7V7 . . . M 4 -28.289 -1.202 1.147 1 61 ? C12 7V7 301 L 1 HETATM 17 C C14 7V7 . . . M 4 -29.836 -2.298 2.804 1 59.5 ? C14 7V7 301 L 1 HETATM 18 C C16 7V7 . . . M 4 -29.792 -4.582 3.563 1 67.01 ? C16 7V7 301 L 1 HETATM 19 C C18 7V7 . . . M 4 -31.896 -3.505 3.113 1 60.19 ? C18 7V7 301 L 1 HETATM 20 C C19 7V7 . . . M 4 -31.224 -2.34 2.763 1 55.81 ? C19 7V7 301 L 1 HETATM 21 C C23 7V7 . . . M 4 -28.672 6.026 -2.551 1 47.19 ? C23 7V7 301 L 1 HETATM 22 C C25 7V7 . . . M 4 -27.307 4.104 -3.037 1 53.07 ? C25 7V7 301 L 1 HETATM 23 N N05 7V7 . . . M 4 -25.693 3.291 -1.375 1 51.76 ? N05 7V7 301 L 1 HETATM 24 N N09 7V7 . . . M 4 -27.993 0.156 0.579 1 60.25 ? N09 7V7 301 L 1 HETATM 25 O O01 7V7 . . . M 4 -23.481 2.816 -1.328 1 58.48 ? O01 7V7 301 L 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #