data_9AXS
#
_model_server_result.job_id            DNQsK8GQ8ve8hy_1YNmF-g 
_model_server_result.datetime_utc      '2025-07-18 01:57:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9axs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    9AXS 
#
_exptl.entry_id    9AXS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.88 
_cell.angle_gamma         90 
_cell.entry_id            9AXS 
_cell.length_a            94.328 
_cell.length_b            61.321 
_cell.length_c            76.576 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 146 H CYS 140 1_555 A SG CYS 202 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     9AXS 
_atom_sites.fract_transf_matrix[1][1]    0.010601 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00262 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL H 1 301 295 GOL GOL . 
D 3 GOL L 1 301 301 GOL GOL . 
E 4 HOH H 1 401 164 HOH HOH . 
E 4 HOH H 2 402 144 HOH HOH . 
E 4 HOH H 3 403 70 HOH HOH . 
E 4 HOH H 4 404 167 HOH HOH . 
E 4 HOH H 5 405 69 HOH HOH . 
E 4 HOH H 6 406 118 HOH HOH . 
E 4 HOH H 7 407 106 HOH HOH . 
E 4 HOH H 8 408 4 HOH HOH . 
E 4 HOH H 9 409 125 HOH HOH . 
E 4 HOH H 10 410 81 HOH HOH . 
E 4 HOH H 11 411 52 HOH HOH . 
E 4 HOH H 12 412 6 HOH HOH . 
E 4 HOH H 13 413 1 HOH HOH . 
E 4 HOH H 14 414 177 HOH HOH . 
E 4 HOH H 15 415 46 HOH HOH . 
E 4 HOH H 16 416 15 HOH HOH . 
E 4 HOH H 17 417 58 HOH HOH . 
E 4 HOH H 18 418 176 HOH HOH . 
E 4 HOH H 19 419 107 HOH HOH . 
E 4 HOH H 20 420 63 HOH HOH . 
E 4 HOH H 21 421 98 HOH HOH . 
E 4 HOH H 22 422 102 HOH HOH . 
E 4 HOH H 23 423 59 HOH HOH . 
E 4 HOH H 24 424 191 HOH HOH . 
E 4 HOH H 25 425 151 HOH HOH . 
E 4 HOH H 26 426 2 HOH HOH . 
E 4 HOH H 27 427 44 HOH HOH . 
E 4 HOH H 28 428 29 HOH HOH . 
E 4 HOH H 29 429 37 HOH HOH . 
E 4 HOH H 30 430 96 HOH HOH . 
E 4 HOH H 31 431 182 HOH HOH . 
E 4 HOH H 32 432 31 HOH HOH . 
E 4 HOH H 33 433 95 HOH HOH . 
E 4 HOH H 34 434 28 HOH HOH . 
E 4 HOH H 35 435 24 HOH HOH . 
E 4 HOH H 36 436 42 HOH HOH . 
E 4 HOH H 37 437 76 HOH HOH . 
E 4 HOH H 38 438 157 HOH HOH . 
E 4 HOH H 39 439 49 HOH HOH . 
E 4 HOH H 40 440 110 HOH HOH . 
E 4 HOH H 41 441 61 HOH HOH . 
E 4 HOH H 42 442 26 HOH HOH . 
E 4 HOH H 43 443 74 HOH HOH . 
E 4 HOH H 44 444 116 HOH HOH . 
E 4 HOH H 45 445 72 HOH HOH . 
E 4 HOH H 46 446 175 HOH HOH . 
E 4 HOH H 47 447 93 HOH HOH . 
E 4 HOH H 48 448 50 HOH HOH . 
E 4 HOH H 49 449 7 HOH HOH . 
E 4 HOH H 50 450 22 HOH HOH . 
E 4 HOH H 51 451 127 HOH HOH . 
E 4 HOH H 52 452 33 HOH HOH . 
E 4 HOH H 53 453 84 HOH HOH . 
E 4 HOH H 54 454 158 HOH HOH . 
E 4 HOH H 55 455 34 HOH HOH . 
E 4 HOH H 56 456 19 HOH HOH . 
E 4 HOH H 57 457 166 HOH HOH . 
E 4 HOH H 58 458 136 HOH HOH . 
E 4 HOH H 59 459 16 HOH HOH . 
E 4 HOH H 60 460 40 HOH HOH . 
E 4 HOH H 61 461 47 HOH HOH . 
E 4 HOH H 62 462 9 HOH HOH . 
E 4 HOH H 63 463 20 HOH HOH . 
E 4 HOH H 64 464 10 HOH HOH . 
E 4 HOH H 65 465 172 HOH HOH . 
E 4 HOH H 66 466 171 HOH HOH . 
E 4 HOH H 67 467 41 HOH HOH . 
E 4 HOH H 68 468 92 HOH HOH . 
E 4 HOH H 69 469 178 HOH HOH . 
E 4 HOH H 70 470 149 HOH HOH . 
E 4 HOH H 71 471 80 HOH HOH . 
E 4 HOH H 72 472 21 HOH HOH . 
E 4 HOH H 73 473 113 HOH HOH . 
E 4 HOH H 74 474 122 HOH HOH . 
E 4 HOH H 75 475 97 HOH HOH . 
E 4 HOH H 76 476 43 HOH HOH . 
E 4 HOH H 77 477 103 HOH HOH . 
E 4 HOH H 78 478 87 HOH HOH . 
E 4 HOH H 79 479 8 HOH HOH . 
E 4 HOH H 80 480 79 HOH HOH . 
E 4 HOH H 81 481 32 HOH HOH . 
E 4 HOH H 82 482 67 HOH HOH . 
E 4 HOH H 83 483 133 HOH HOH . 
E 4 HOH H 84 484 112 HOH HOH . 
E 4 HOH H 85 485 111 HOH HOH . 
E 4 HOH H 86 486 168 HOH HOH . 
E 4 HOH H 87 487 68 HOH HOH . 
E 4 HOH H 88 488 99 HOH HOH . 
E 4 HOH H 89 489 153 HOH HOH . 
E 4 HOH H 90 490 148 HOH HOH . 
E 4 HOH H 91 491 163 HOH HOH . 
E 4 HOH H 92 492 129 HOH HOH . 
E 4 HOH H 93 493 140 HOH HOH . 
E 4 HOH H 94 494 56 HOH HOH . 
E 4 HOH H 95 495 170 HOH HOH . 
E 4 HOH H 96 496 137 HOH HOH . 
E 4 HOH H 97 497 73 HOH HOH . 
E 4 HOH H 98 498 169 HOH HOH . 
E 4 HOH H 99 499 183 HOH HOH . 
E 4 HOH H 100 500 141 HOH HOH . 
E 4 HOH H 101 501 174 HOH HOH . 
E 4 HOH H 102 502 51 HOH HOH . 
E 4 HOH H 103 503 165 HOH HOH . 
E 4 HOH H 104 504 152 HOH HOH . 
E 4 HOH H 105 505 130 HOH HOH . 
E 4 HOH H 106 506 77 HOH HOH . 
F 4 HOH L 1 401 60 HOH HOH . 
F 4 HOH L 2 402 30 HOH HOH . 
F 4 HOH L 3 403 89 HOH HOH . 
F 4 HOH L 4 404 188 HOH HOH . 
F 4 HOH L 5 405 64 HOH HOH . 
F 4 HOH L 6 406 91 HOH HOH . 
F 4 HOH L 7 407 75 HOH HOH . 
F 4 HOH L 8 408 11 HOH HOH . 
F 4 HOH L 9 409 162 HOH HOH . 
F 4 HOH L 10 410 12 HOH HOH . 
F 4 HOH L 11 411 65 HOH HOH . 
F 4 HOH L 12 412 90 HOH HOH . 
F 4 HOH L 13 413 109 HOH HOH . 
F 4 HOH L 14 414 86 HOH HOH . 
F 4 HOH L 15 415 66 HOH HOH . 
F 4 HOH L 16 416 83 HOH HOH . 
F 4 HOH L 17 417 45 HOH HOH . 
F 4 HOH L 18 418 57 HOH HOH . 
F 4 HOH L 19 419 27 HOH HOH . 
F 4 HOH L 20 420 126 HOH HOH . 
F 4 HOH L 21 421 134 HOH HOH . 
F 4 HOH L 22 422 139 HOH HOH . 
F 4 HOH L 23 423 38 HOH HOH . 
F 4 HOH L 24 424 14 HOH HOH . 
F 4 HOH L 25 425 94 HOH HOH . 
F 4 HOH L 26 426 101 HOH HOH . 
F 4 HOH L 27 427 104 HOH HOH . 
F 4 HOH L 28 428 35 HOH HOH . 
F 4 HOH L 29 429 145 HOH HOH . 
F 4 HOH L 30 430 17 HOH HOH . 
F 4 HOH L 31 431 71 HOH HOH . 
F 4 HOH L 32 432 78 HOH HOH . 
F 4 HOH L 33 433 62 HOH HOH . 
F 4 HOH L 34 434 100 HOH HOH . 
F 4 HOH L 35 435 25 HOH HOH . 
F 4 HOH L 36 436 36 HOH HOH . 
F 4 HOH L 37 437 131 HOH HOH . 
F 4 HOH L 38 438 18 HOH HOH . 
F 4 HOH L 39 439 114 HOH HOH . 
F 4 HOH L 40 440 48 HOH HOH . 
F 4 HOH L 41 441 154 HOH HOH . 
F 4 HOH L 42 442 187 HOH HOH . 
F 4 HOH L 43 443 55 HOH HOH . 
F 4 HOH L 44 444 185 HOH HOH . 
F 4 HOH L 45 445 161 HOH HOH . 
F 4 HOH L 46 446 123 HOH HOH . 
F 4 HOH L 47 447 128 HOH HOH . 
F 4 HOH L 48 448 108 HOH HOH . 
F 4 HOH L 49 449 53 HOH HOH . 
F 4 HOH L 50 450 146 HOH HOH . 
F 4 HOH L 51 451 160 HOH HOH . 
F 4 HOH L 52 452 3 HOH HOH . 
F 4 HOH L 53 453 13 HOH HOH . 
F 4 HOH L 54 454 117 HOH HOH . 
F 4 HOH L 55 455 105 HOH HOH . 
F 4 HOH L 56 456 5 HOH HOH . 
F 4 HOH L 57 457 23 HOH HOH . 
F 4 HOH L 58 458 186 HOH HOH . 
F 4 HOH L 59 459 88 HOH HOH . 
F 4 HOH L 60 460 39 HOH HOH . 
F 4 HOH L 61 461 82 HOH HOH . 
F 4 HOH L 62 462 121 HOH HOH . 
F 4 HOH L 63 463 85 HOH HOH . 
F 4 HOH L 64 464 124 HOH HOH . 
F 4 HOH L 65 465 135 HOH HOH . 
F 4 HOH L 66 466 159 HOH HOH . 
F 4 HOH L 67 467 147 HOH HOH . 
F 4 HOH L 68 468 189 HOH HOH . 
F 4 HOH L 69 469 132 HOH HOH . 
F 4 HOH L 70 470 173 HOH HOH . 
F 4 HOH L 71 471 54 HOH HOH . 
F 4 HOH L 72 472 138 HOH HOH . 
F 4 HOH L 73 473 143 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 17.285 -13.515 -0.683 1 34.78 ? C1 GOL 301 H 1 
HETATM 2 O O1 GOL . . . C 3 16.984 -12.736 0.434 1 43.72 ? O1 GOL 301 H 1 
HETATM 3 C C2 GOL . . . C 3 17.338 -12.546 -1.877 1 43.5 ? C2 GOL 301 H 1 
HETATM 4 O O2 GOL . . . C 3 18.601 -12.502 -2.449 1 47.09 ? O2 GOL 301 H 1 
HETATM 5 C C3 GOL . . . C 3 16.255 -13.057 -2.856 1 42.28 ? C3 GOL 301 H 1 
HETATM 6 O O3 GOL . . . C 3 16.917 -13.813 -3.813 1 39.12 ? O3 GOL 301 H 1 
#
_model_server_stats.io_time_ms              95 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#