data_9AXY # _model_server_result.job_id PDBWC7WAKgOOqYjBJDkbDQ _model_server_result.datetime_utc '2024-11-05 00:36:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9axy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 9AXY # _exptl.entry_id 9AXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.464 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9AXY _cell.length_a 117.097 _cell.length_b 117.097 _cell.length_c 129.424 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 138 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 A OD2 ASP 151 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc3 C O2G ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc4 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B OD1 ASN 196 B ASN 195 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc7 B OD2 ASP 209 B ASP 208 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc8 F O1B ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 F O2A ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C22 H18 F2 N4 O5 S' _chem_comp.formula_weight 488.464 _chem_comp.id A1AHE _chem_comp.mon_nstd_flag . _chem_comp.name "N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 A1AHE sing 1 n n N02 S03 A1AHE sing 2 n n O05 S03 A1AHE doub 3 n n S03 O04 A1AHE doub 4 n n S03 N06 A1AHE sing 5 n n N06 C07 A1AHE sing 6 n n N08 C07 A1AHE doub 7 n y N08 C09 A1AHE sing 8 n y C15 C14 A1AHE sing 9 n n C07 C33 A1AHE sing 10 n y C09 C10 A1AHE doub 11 n y C17 C18 A1AHE doub 12 n y C17 C16 A1AHE sing 13 n y C33 F34 A1AHE sing 14 n n C33 C11 A1AHE doub 15 n y C10 C11 A1AHE sing 16 n y C18 C19 A1AHE sing 17 n y C14 C16 A1AHE sing 18 n n C14 C13 A1AHE doub 19 n n C11 C12 A1AHE sing 20 n n C16 C29 A1AHE doub 21 n y C12 C13 A1AHE sing 22 n n C23 N22 A1AHE doub 23 n y C23 C24 A1AHE sing 24 n y N22 C21 A1AHE sing 25 n y C13 C31 A1AHE sing 26 n n C19 O20 A1AHE sing 27 n n C19 C28 A1AHE doub 28 n y C24 C25 A1AHE doub 29 n y C21 O20 A1AHE sing 30 n n C21 C26 A1AHE doub 31 n y C29 C28 A1AHE sing 32 n y C29 O30 A1AHE sing 33 n n C25 C26 A1AHE sing 34 n y C26 F27 A1AHE sing 35 n n C31 O30 A1AHE sing 36 n n C31 O32 A1AHE doub 37 n n C10 H1 A1AHE sing 38 n n C15 H3 A1AHE sing 39 n n C15 H4 A1AHE sing 40 n n C15 H5 A1AHE sing 41 n n C17 H6 A1AHE sing 42 n n C18 H7 A1AHE sing 43 n n C23 H8 A1AHE sing 44 n n C24 H9 A1AHE sing 45 n n C25 H10 A1AHE sing 46 n n C28 H11 A1AHE sing 47 n n C01 H12 A1AHE sing 48 n n C01 H13 A1AHE sing 49 n n C01 H14 A1AHE sing 50 n n C09 H15 A1AHE sing 51 n n C12 H16 A1AHE sing 52 n n C12 H17 A1AHE sing 53 n n N02 H19 A1AHE sing 54 n n N06 H20 A1AHE sing 55 n n # _atom_sites.entry_id 9AXY _atom_sites.fract_transf_matrix[1][1] 0.00854 _atom_sites.fract_transf_matrix[1][2] 0.004931 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 1 ANP ANP . D 4 MG A 1 802 1 MG MG . E 5 A1AHE B 1 401 401 A1AHE 628 . F 3 ANP B 1 402 2 ANP ANP . G 4 MG B 1 403 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1AHE . . . E 5 -63.386 19.871 4.993 1 112.58 ? C10 A1AHE 401 B 1 HETATM 2 C C11 A1AHE . . . E 5 -62.684 20.382 3.896 1 114.74 ? C11 A1AHE 401 B 1 HETATM 3 C C14 A1AHE . . . E 5 -63.743 23.661 4.423 1 110.36 ? C14 A1AHE 401 B 1 HETATM 4 C C15 A1AHE . . . E 5 -62.29 23.97 4.681 1 109.4 ? C15 A1AHE 401 B 1 HETATM 5 C C16 A1AHE . . . E 5 -64.724 24.478 5.136 1 106.29 ? C16 A1AHE 401 B 1 HETATM 6 C C17 A1AHE . . . E 5 -64.415 25.481 6.076 1 106.83 ? C17 A1AHE 401 B 1 HETATM 7 C C18 A1AHE . . . E 5 -65.379 26.223 6.719 1 106.74 ? C18 A1AHE 401 B 1 HETATM 8 C C19 A1AHE . . . E 5 -66.744 26.007 6.466 1 106.41 ? C19 A1AHE 401 B 1 HETATM 9 C C23 A1AHE . . . E 5 -68.947 24.626 9.681 1 103.24 ? C23 A1AHE 401 B 1 HETATM 10 C C24 A1AHE . . . E 5 -70.159 25.217 10.063 1 102.56 ? C24 A1AHE 401 B 1 HETATM 11 C C25 A1AHE . . . E 5 -70.525 26.398 9.439 1 103.28 ? C25 A1AHE 401 B 1 HETATM 12 C C26 A1AHE . . . E 5 -69.67 26.935 8.464 1 105 ? C26 A1AHE 401 B 1 HETATM 13 C C28 A1AHE . . . E 5 -67.125 25.029 5.54 1 106.44 ? C28 A1AHE 401 B 1 HETATM 14 C C29 A1AHE . . . E 5 -66.098 24.283 4.896 1 111.17 ? C29 A1AHE 401 B 1 HETATM 15 C C01 A1AHE . . . E 5 -56.742 16.619 4.391 1 114.69 ? C01 A1AHE 401 B 1 HETATM 16 C C07 A1AHE . . . E 5 -60.973 18.625 4.399 1 118.15 ? C07 A1AHE 401 B 1 HETATM 17 C C09 A1AHE . . . E 5 -62.872 18.788 5.723 1 113.83 ? C09 A1AHE 401 B 1 HETATM 18 C C12 A1AHE . . . E 5 -63.241 21.551 3.081 1 110.47 ? C12 A1AHE 401 B 1 HETATM 19 C C13 A1AHE . . . E 5 -64.138 22.581 3.702 1 111.02 ? C13 A1AHE 401 B 1 HETATM 20 C C21 A1AHE . . . E 5 -68.461 26.28 8.125 1 106.71 ? C21 A1AHE 401 B 1 HETATM 21 C C31 A1AHE . . . E 5 -65.569 22.499 3.373 1 107.29 ? C31 A1AHE 401 B 1 HETATM 22 C C33 A1AHE . . . E 5 -61.449 19.724 3.615 1 115.82 ? C33 A1AHE 401 B 1 HETATM 23 F F27 A1AHE . . . E 5 -70.036 28.068 7.878 1 104.77 ? F27 A1AHE 401 B 1 HETATM 24 F F34 A1AHE . . . E 5 -60.693 20.139 2.579 1 114.22 ? F34 A1AHE 401 B 1 HETATM 25 N N02 A1AHE . . . E 5 -57.933 16.006 3.723 1 118.9 ? N02 A1AHE 401 B 1 HETATM 26 N N06 A1AHE . . . E 5 -59.754 17.936 4.154 1 122.3 ? N06 A1AHE 401 B 1 HETATM 27 N N08 A1AHE . . . E 5 -61.702 18.163 5.462 1 117.04 ? N08 A1AHE 401 B 1 HETATM 28 N N22 A1AHE . . . E 5 -68.1 25.119 8.743 1 103.93 ? N22 A1AHE 401 B 1 HETATM 29 O O04 A1AHE . . . E 5 -59.463 15.902 5.663 1 117.53 ? O04 A1AHE 401 B 1 HETATM 30 O O05 A1AHE . . . E 5 -60.419 15.602 3.402 1 120.01 ? O05 A1AHE 401 B 1 HETATM 31 O O20 A1AHE . . . E 5 -67.625 26.819 7.167 1 107.01 ? O20 A1AHE 401 B 1 HETATM 32 O O30 A1AHE . . . E 5 -66.513 23.331 3.997 1 110.48 ? O30 A1AHE 401 B 1 HETATM 33 O O32 A1AHE . . . E 5 -66.086 21.746 2.565 1 107.75 ? O32 A1AHE 401 B 1 HETATM 34 S S03 A1AHE . . . E 5 -59.515 16.249 4.287 1 123.02 ? S03 A1AHE 401 B 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #