data_9AXY # _model_server_result.job_id zUDO8bfnQiEJq-HIq_JUSg _model_server_result.datetime_utc '2024-11-26 08:52:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9axy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 9AXY # _exptl.entry_id 9AXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9AXY _cell.length_a 117.097 _cell.length_b 117.097 _cell.length_c 129.424 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 138 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 A OD2 ASP 151 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc3 C O2G ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc4 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B OD1 ASN 196 B ASN 195 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc7 B OD2 ASP 209 B ASP 208 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc8 F O1B ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 F O2A ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 68 n n PG O2G ANP sing 69 n n PG O3G ANP sing 70 n n PG N3B ANP sing 71 n n O2G HOG2 ANP sing 72 n n O3G HOG3 ANP sing 73 n n PB O1B ANP doub 74 n n PB O2B ANP sing 75 n n PB N3B ANP sing 76 n n PB O3A ANP sing 77 n n O2B HOB2 ANP sing 78 n n N3B HNB1 ANP sing 79 n n PA O1A ANP doub 80 n n PA O2A ANP sing 81 n n PA O3A ANP sing 82 n n PA O5' ANP sing 83 n n O2A HOA2 ANP sing 84 n n O5' C5' ANP sing 85 n n C5' C4' ANP sing 86 n n C5' "H5'1" ANP sing 87 n n C5' "H5'2" ANP sing 88 n n C4' O4' ANP sing 89 n n C4' C3' ANP sing 90 n n C4' H4' ANP sing 91 n n O4' C1' ANP sing 92 n n C3' O3' ANP sing 93 n n C3' C2' ANP sing 94 n n C3' H3' ANP sing 95 n n O3' HO3' ANP sing 96 n n C2' O2' ANP sing 97 n n C2' C1' ANP sing 98 n n C2' H2' ANP sing 99 n n O2' HO2' ANP sing 100 n n C1' N9 ANP sing 101 n n C1' H1' ANP sing 102 n n N9 C8 ANP sing 103 n y N9 C4 ANP sing 104 n y C8 N7 ANP doub 105 n y C8 H8 ANP sing 106 n n N7 C5 ANP sing 107 n y C5 C6 ANP sing 108 n y C5 C4 ANP doub 109 n y C6 N6 ANP sing 110 n n C6 N1 ANP doub 111 n y N6 HN61 ANP sing 112 n n N6 HN62 ANP sing 113 n n N1 C2 ANP sing 114 n y C2 N3 ANP doub 115 n y C2 H2 ANP sing 116 n n N3 C4 ANP sing 117 n y # _atom_sites.entry_id 9AXY _atom_sites.fract_transf_matrix[1][1] 0.00854 _atom_sites.fract_transf_matrix[1][2] 0.004931 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 1 ANP ANP . D 4 MG A 1 802 1 MG MG . E 5 A1AHE B 1 401 401 A1AHE 628 . F 3 ANP B 1 402 2 ANP ANP . G 4 MG B 1 403 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 -56.268 23.894 10.209 1 78.86 ? PG ANP 402 B 1 HETATM 2 O O1G ANP . . . F 3 -57.568 23.22 9.908 1 71.25 ? O1G ANP 402 B 1 HETATM 3 O O2G ANP . . . F 3 -55.079 22.896 9.939 1 86.11 ? O2G ANP 402 B 1 HETATM 4 O O3G ANP . . . F 3 -56.102 25.172 9.294 1 89.72 ? O3G ANP 402 B 1 HETATM 5 P PB ANP . . . F 3 -57.451 25.431 12.196 1 80.21 ? PB ANP 402 B 1 HETATM 6 O O1B ANP . . . F 3 -58.78 24.786 11.978 1 72.74 ? O1B ANP 402 B 1 HETATM 7 O O2B ANP . . . F 3 -57.312 25.838 13.688 1 80.11 ? O2B ANP 402 B 1 HETATM 8 N N3B ANP . . . F 3 -56.223 24.351 11.835 1 72.49 ? N3B ANP 402 B 1 HETATM 9 P PA ANP . . . F 3 -58.626 27.517 10.857 1 63.82 ? PA ANP 402 B 1 HETATM 10 O O1A ANP . . . F 3 -58.361 28.192 9.566 1 70.33 ? O1A ANP 402 B 1 HETATM 11 O O2A ANP . . . F 3 -59.795 26.525 10.819 1 70.52 ? O2A ANP 402 B 1 HETATM 12 O O3A ANP . . . F 3 -57.332 26.715 11.321 1 73.47 ? O3A ANP 402 B 1 HETATM 13 O O5' ANP . . . F 3 -58.857 28.637 11.957 1 65.29 ? O5' ANP 402 B 1 HETATM 14 C C5' ANP . . . F 3 -57.789 29.092 12.815 1 70.4 ? C5' ANP 402 B 1 HETATM 15 C C4' ANP . . . F 3 -58.372 29.408 14.168 1 70.16 ? C4' ANP 402 B 1 HETATM 16 O O4' ANP . . . F 3 -59.543 30.224 14.003 1 68.21 ? O4' ANP 402 B 1 HETATM 17 C C3' ANP . . . F 3 -58.862 28.199 14.955 1 74.58 ? C3' ANP 402 B 1 HETATM 18 O O3' ANP . . . F 3 -57.801 27.614 15.703 1 74.47 ? O3' ANP 402 B 1 HETATM 19 C C2' ANP . . . F 3 -59.951 28.787 15.863 1 72.16 ? C2' ANP 402 B 1 HETATM 20 O O2' ANP . . . F 3 -59.455 29.063 17.168 1 75.99 ? O2' ANP 402 B 1 HETATM 21 C C1' ANP . . . F 3 -60.37 30.079 15.141 1 69.97 ? C1' ANP 402 B 1 HETATM 22 N N9 ANP . . . F 3 -61.762 30.09 14.705 1 67.44 ? N9 ANP 402 B 1 HETATM 23 C C8 ANP . . . F 3 -62.275 29.547 13.555 1 70.17 ? C8 ANP 402 B 1 HETATM 24 N N7 ANP . . . F 3 -63.57 29.704 13.422 1 66.55 ? N7 ANP 402 B 1 HETATM 25 C C5 ANP . . . F 3 -63.938 30.397 14.566 1 63.36 ? C5 ANP 402 B 1 HETATM 26 C C6 ANP . . . F 3 -65.179 30.874 15.029 1 66.54 ? C6 ANP 402 B 1 HETATM 27 N N6 ANP . . . F 3 -66.329 30.714 14.369 1 66.09 ? N6 ANP 402 B 1 HETATM 28 N N1 ANP . . . F 3 -65.198 31.525 16.214 1 69.35 ? N1 ANP 402 B 1 HETATM 29 C C2 ANP . . . F 3 -64.05 31.686 16.878 1 66.73 ? C2 ANP 402 B 1 HETATM 30 N N3 ANP . . . F 3 -62.823 31.283 16.541 1 63.28 ? N3 ANP 402 B 1 HETATM 31 C C4 ANP . . . F 3 -62.833 30.64 15.365 1 63.75 ? C4 ANP 402 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1179 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #