data_9AY7
#
_model_server_result.job_id            0WBh-NzzH--fKQ3LTvQA9A 
_model_server_result.datetime_utc      '2024-11-05 00:38:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ay7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":706}' 
#
_entry.id    9AY7 
#
_exptl.entry_id    9AY7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9AY7 
_cell.length_a            60.03 
_cell.length_b            107.95 
_cell.length_c            116.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AY7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 138 A ASN 473 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc2 A OD2 ASP 151 A ASP 486 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc3 A OE1 GLU 272 A GLU 607 1_555 E NI NI . A NI 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc4 A NE2 HIS 276 A HIS 611 1_555 E NI NI . A NI 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc5 C O2G ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc6 C O2B ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc7 C O2A ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc8 D MG MG . A MG 702 1_555 O O HOH . A HOH 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc9 E NI NI . A NI 703 1_555 O O HOH . A HOH 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc10 E NI NI . A NI 703 3_454 B SG CYS 278 B CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc11 B OD1 ASN 196 B ASN 195 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc12 B OD2 ASP 209 B ASP 208 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc13 J O2B ANP . B ANP 402 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc14 J O1A ANP . B ANP 402 1_555 K MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc15 K MG MG . B MG 403 1_555 P O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc16 K MG MG . B MG 403 1_555 P O HOH . B HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 194 n n 
C1 C2 EDO sing 195 n n 
C1 H11 EDO sing 196 n n 
C1 H12 EDO sing 197 n n 
O1 HO1 EDO sing 198 n n 
C2 O2 EDO sing 199 n n 
C2 H21 EDO sing 200 n n 
C2 H22 EDO sing 201 n n 
O2 HO2 EDO sing 202 n n 
#
_atom_sites.entry_id                     9AY7 
_atom_sites.fract_transf_matrix[1][1]    0.016658 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009264 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008603 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ANP A 1 701 1 ANP ANP . 
D 4 MG A 1 702 1 MG MG . 
E 5 NI A 1 703 1 NI NI . 
F 6 ACT A 1 704 1 ACT ACT . 
G 6 ACT A 1 705 4 ACT ACT . 
H 7 EDO A 1 706 1 EDO EDO . 
I 8 A1AHE B 1 401 401 A1AHE 628 . 
J 3 ANP B 1 402 2 ANP ANP . 
K 4 MG B 1 403 2 MG MG . 
L 6 ACT B 1 404 2 ACT ACT . 
M 6 ACT B 1 405 3 ACT ACT . 
N 6 ACT B 1 406 5 ACT ACT . 
O 9 HOH A 1 801 16 HOH HOH . 
O 9 HOH A 2 802 11 HOH HOH . 
O 9 HOH A 3 803 146 HOH HOH . 
O 9 HOH A 4 804 90 HOH HOH . 
O 9 HOH A 5 805 39 HOH HOH . 
O 9 HOH A 6 806 46 HOH HOH . 
O 9 HOH A 7 807 91 HOH HOH . 
O 9 HOH A 8 808 23 HOH HOH . 
O 9 HOH A 9 809 6 HOH HOH . 
O 9 HOH A 10 810 15 HOH HOH . 
O 9 HOH A 11 811 42 HOH HOH . 
O 9 HOH A 12 812 31 HOH HOH . 
O 9 HOH A 13 813 5 HOH HOH . 
O 9 HOH A 14 814 30 HOH HOH . 
O 9 HOH A 15 815 134 HOH HOH . 
O 9 HOH A 16 816 26 HOH HOH . 
O 9 HOH A 17 817 73 HOH HOH . 
O 9 HOH A 18 818 159 HOH HOH . 
O 9 HOH A 19 819 86 HOH HOH . 
O 9 HOH A 20 820 72 HOH HOH . 
O 9 HOH A 21 821 22 HOH HOH . 
O 9 HOH A 22 822 115 HOH HOH . 
O 9 HOH A 23 823 79 HOH HOH . 
O 9 HOH A 24 824 135 HOH HOH . 
O 9 HOH A 25 825 137 HOH HOH . 
O 9 HOH A 26 826 103 HOH HOH . 
O 9 HOH A 27 827 74 HOH HOH . 
O 9 HOH A 28 828 60 HOH HOH . 
O 9 HOH A 29 829 32 HOH HOH . 
O 9 HOH A 30 830 2 HOH HOH . 
O 9 HOH A 31 831 147 HOH HOH . 
O 9 HOH A 32 832 62 HOH HOH . 
O 9 HOH A 33 833 10 HOH HOH . 
O 9 HOH A 34 834 176 HOH HOH . 
O 9 HOH A 35 835 68 HOH HOH . 
O 9 HOH A 36 836 108 HOH HOH . 
O 9 HOH A 37 837 51 HOH HOH . 
O 9 HOH A 38 838 59 HOH HOH . 
O 9 HOH A 39 839 24 HOH HOH . 
O 9 HOH A 40 840 36 HOH HOH . 
O 9 HOH A 41 841 80 HOH HOH . 
O 9 HOH A 42 842 136 HOH HOH . 
O 9 HOH A 43 843 44 HOH HOH . 
O 9 HOH A 44 844 109 HOH HOH . 
O 9 HOH A 45 845 61 HOH HOH . 
O 9 HOH A 46 846 161 HOH HOH . 
O 9 HOH A 47 847 101 HOH HOH . 
O 9 HOH A 48 848 71 HOH HOH . 
O 9 HOH A 49 849 83 HOH HOH . 
O 9 HOH A 50 850 87 HOH HOH . 
O 9 HOH A 51 851 175 HOH HOH . 
O 9 HOH A 52 852 88 HOH HOH . 
O 9 HOH A 53 853 96 HOH HOH . 
O 9 HOH A 54 854 162 HOH HOH . 
O 9 HOH A 55 855 150 HOH HOH . 
O 9 HOH A 56 856 25 HOH HOH . 
O 9 HOH A 57 857 149 HOH HOH . 
O 9 HOH A 58 858 56 HOH HOH . 
O 9 HOH A 59 859 34 HOH HOH . 
O 9 HOH A 60 860 148 HOH HOH . 
O 9 HOH A 61 861 107 HOH HOH . 
O 9 HOH A 62 862 171 HOH HOH . 
O 9 HOH A 63 863 41 HOH HOH . 
O 9 HOH A 64 864 53 HOH HOH . 
O 9 HOH A 65 865 133 HOH HOH . 
O 9 HOH A 66 866 132 HOH HOH . 
O 9 HOH A 67 867 138 HOH HOH . 
O 9 HOH A 68 868 97 HOH HOH . 
O 9 HOH A 69 869 12 HOH HOH . 
O 9 HOH A 70 870 155 HOH HOH . 
O 9 HOH A 71 871 4 HOH HOH . 
O 9 HOH A 72 872 113 HOH HOH . 
O 9 HOH A 73 873 142 HOH HOH . 
O 9 HOH A 74 874 92 HOH HOH . 
O 9 HOH A 75 875 47 HOH HOH . 
O 9 HOH A 76 876 178 HOH HOH . 
O 9 HOH A 77 877 167 HOH HOH . 
P 9 HOH B 1 501 66 HOH HOH . 
P 9 HOH B 2 502 21 HOH HOH . 
P 9 HOH B 3 503 3 HOH HOH . 
P 9 HOH B 4 504 17 HOH HOH . 
P 9 HOH B 5 505 37 HOH HOH . 
P 9 HOH B 6 506 127 HOH HOH . 
P 9 HOH B 7 507 131 HOH HOH . 
P 9 HOH B 8 508 98 HOH HOH . 
P 9 HOH B 9 509 139 HOH HOH . 
P 9 HOH B 10 510 7 HOH HOH . 
P 9 HOH B 11 511 52 HOH HOH . 
P 9 HOH B 12 512 54 HOH HOH . 
P 9 HOH B 13 513 8 HOH HOH . 
P 9 HOH B 14 514 20 HOH HOH . 
P 9 HOH B 15 515 13 HOH HOH . 
P 9 HOH B 16 516 64 HOH HOH . 
P 9 HOH B 17 517 104 HOH HOH . 
P 9 HOH B 18 518 19 HOH HOH . 
P 9 HOH B 19 519 124 HOH HOH . 
P 9 HOH B 20 520 172 HOH HOH . 
P 9 HOH B 21 521 63 HOH HOH . 
P 9 HOH B 22 522 94 HOH HOH . 
P 9 HOH B 23 523 65 HOH HOH . 
P 9 HOH B 24 524 100 HOH HOH . 
P 9 HOH B 25 525 121 HOH HOH . 
P 9 HOH B 26 526 122 HOH HOH . 
P 9 HOH B 27 527 9 HOH HOH . 
P 9 HOH B 28 528 174 HOH HOH . 
P 9 HOH B 29 529 82 HOH HOH . 
P 9 HOH B 30 530 163 HOH HOH . 
P 9 HOH B 31 531 81 HOH HOH . 
P 9 HOH B 32 532 160 HOH HOH . 
P 9 HOH B 33 533 14 HOH HOH . 
P 9 HOH B 34 534 38 HOH HOH . 
P 9 HOH B 35 535 165 HOH HOH . 
P 9 HOH B 36 536 40 HOH HOH . 
P 9 HOH B 37 537 170 HOH HOH . 
P 9 HOH B 38 538 151 HOH HOH . 
P 9 HOH B 39 539 89 HOH HOH . 
P 9 HOH B 40 540 144 HOH HOH . 
P 9 HOH B 41 541 130 HOH HOH . 
P 9 HOH B 42 542 35 HOH HOH . 
P 9 HOH B 43 543 69 HOH HOH . 
P 9 HOH B 44 544 33 HOH HOH . 
P 9 HOH B 45 545 1 HOH HOH . 
P 9 HOH B 46 546 117 HOH HOH . 
P 9 HOH B 47 547 114 HOH HOH . 
P 9 HOH B 48 548 126 HOH HOH . 
P 9 HOH B 49 549 48 HOH HOH . 
P 9 HOH B 50 550 55 HOH HOH . 
P 9 HOH B 51 551 106 HOH HOH . 
P 9 HOH B 52 552 43 HOH HOH . 
P 9 HOH B 53 553 27 HOH HOH . 
P 9 HOH B 54 554 45 HOH HOH . 
P 9 HOH B 55 555 50 HOH HOH . 
P 9 HOH B 56 556 143 HOH HOH . 
P 9 HOH B 57 557 49 HOH HOH . 
P 9 HOH B 58 558 85 HOH HOH . 
P 9 HOH B 59 559 140 HOH HOH . 
P 9 HOH B 60 560 76 HOH HOH . 
P 9 HOH B 61 561 67 HOH HOH . 
P 9 HOH B 62 562 164 HOH HOH . 
P 9 HOH B 63 563 141 HOH HOH . 
P 9 HOH B 64 564 18 HOH HOH . 
P 9 HOH B 65 565 111 HOH HOH . 
P 9 HOH B 66 566 29 HOH HOH . 
P 9 HOH B 67 567 128 HOH HOH . 
P 9 HOH B 68 568 70 HOH HOH . 
P 9 HOH B 69 569 152 HOH HOH . 
P 9 HOH B 70 570 102 HOH HOH . 
P 9 HOH B 71 571 78 HOH HOH . 
P 9 HOH B 72 572 145 HOH HOH . 
P 9 HOH B 73 573 123 HOH HOH . 
P 9 HOH B 74 574 57 HOH HOH . 
P 9 HOH B 75 575 157 HOH HOH . 
P 9 HOH B 76 576 153 HOH HOH . 
P 9 HOH B 77 577 125 HOH HOH . 
P 9 HOH B 78 578 120 HOH HOH . 
P 9 HOH B 79 579 129 HOH HOH . 
P 9 HOH B 80 580 75 HOH HOH . 
P 9 HOH B 81 581 154 HOH HOH . 
P 9 HOH B 82 582 84 HOH HOH . 
P 9 HOH B 83 583 166 HOH HOH . 
P 9 HOH B 84 584 168 HOH HOH . 
P 9 HOH B 85 585 119 HOH HOH . 
P 9 HOH B 86 586 110 HOH HOH . 
P 9 HOH B 87 587 99 HOH HOH . 
P 9 HOH B 88 588 158 HOH HOH . 
P 9 HOH B 89 589 93 HOH HOH . 
P 9 HOH B 90 590 77 HOH HOH . 
P 9 HOH B 91 591 112 HOH HOH . 
P 9 HOH B 92 592 173 HOH HOH . 
P 9 HOH B 93 593 95 HOH HOH . 
P 9 HOH B 94 594 105 HOH HOH . 
P 9 HOH B 95 595 169 HOH HOH . 
P 9 HOH B 96 596 177 HOH HOH . 
P 9 HOH B 97 597 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 7 -7.098 -22.792 -6.323 1 90.53 ? C1 EDO 706 A 1 
HETATM 2 O O1 EDO . . . H 7 -7.261 -21.562 -7.04 1 74.61 ? O1 EDO 706 A 1 
HETATM 3 C C2 EDO . . . H 7 -7.616 -23.946 -7.173 1 74.3 ? C2 EDO 706 A 1 
HETATM 4 O O2 EDO . . . H 7 -6.882 -24 -8.401 1 77.17 ? O2 EDO 706 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#