data_9AYA # _model_server_result.job_id 00DNgTrkx2ekih1StuB24Q _model_server_result.datetime_utc '2024-11-30 00:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9aya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 9AYA # _exptl.entry_id 9AYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.59 _cell.angle_gamma 90 _cell.entry_id 9AYA _cell.length_a 149.725 _cell.length_b 58.202 _cell.length_c 162.347 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 74.8625 29.101 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASN 160 B ASN 195 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc2 B OD2 ASP 173 B ASP 208 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 F O1B ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 F O2A ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 G MG MG . B MG 403 1_555 L O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc6 D OD1 ASN 160 D ASN 195 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc7 D OD2 ASP 173 D ASP 208 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc8 I O1B ANP . D ANP 402 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc9 I O2A ANP . D ANP 402 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 J MG MG . D MG 403 1_555 N O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc11 J MG MG . D MG 403 1_555 N O HOH . D HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 68 n n PG O2G ANP sing 69 n n PG O3G ANP sing 70 n n PG N3B ANP sing 71 n n O2G HOG2 ANP sing 72 n n O3G HOG3 ANP sing 73 n n PB O1B ANP doub 74 n n PB O2B ANP sing 75 n n PB N3B ANP sing 76 n n PB O3A ANP sing 77 n n O2B HOB2 ANP sing 78 n n N3B HNB1 ANP sing 79 n n PA O1A ANP doub 80 n n PA O2A ANP sing 81 n n PA O3A ANP sing 82 n n PA O5' ANP sing 83 n n O2A HOA2 ANP sing 84 n n O5' C5' ANP sing 85 n n C5' C4' ANP sing 86 n n C5' "H5'1" ANP sing 87 n n C5' "H5'2" ANP sing 88 n n C4' O4' ANP sing 89 n n C4' C3' ANP sing 90 n n C4' H4' ANP sing 91 n n O4' C1' ANP sing 92 n n C3' O3' ANP sing 93 n n C3' C2' ANP sing 94 n n C3' H3' ANP sing 95 n n O3' HO3' ANP sing 96 n n C2' O2' ANP sing 97 n n C2' C1' ANP sing 98 n n C2' H2' ANP sing 99 n n O2' HO2' ANP sing 100 n n C1' N9 ANP sing 101 n n C1' H1' ANP sing 102 n n N9 C8 ANP sing 103 n y N9 C4 ANP sing 104 n y C8 N7 ANP doub 105 n y C8 H8 ANP sing 106 n n N7 C5 ANP sing 107 n y C5 C6 ANP sing 108 n y C5 C4 ANP doub 109 n y C6 N6 ANP sing 110 n n C6 N1 ANP doub 111 n y N6 HN61 ANP sing 112 n n N6 HN62 ANP sing 113 n n N1 C2 ANP sing 114 n y C2 N3 ANP doub 115 n y C2 H2 ANP sing 116 n n N3 C4 ANP sing 117 n y # _atom_sites.entry_id 9AYA _atom_sites.fract_transf_matrix[1][1] 0.006679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000654 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A1AHE B 1 401 401 A1AHE 628 . F 4 ANP B 1 402 1 ANP ANP . G 5 MG B 1 403 1 MG MG . H 3 A1AHE D 1 401 401 A1AHE 628 . I 4 ANP D 1 402 2 ANP ANP . J 5 MG D 1 403 2 MG MG . K 6 HOH A 1 701 7 HOH HOH . K 6 HOH A 2 702 49 HOH HOH . K 6 HOH A 3 703 11 HOH HOH . K 6 HOH A 4 704 13 HOH HOH . K 6 HOH A 5 705 35 HOH HOH . K 6 HOH A 6 706 28 HOH HOH . K 6 HOH A 7 707 21 HOH HOH . K 6 HOH A 8 708 47 HOH HOH . K 6 HOH A 9 709 45 HOH HOH . K 6 HOH A 10 710 43 HOH HOH . K 6 HOH A 11 711 37 HOH HOH . K 6 HOH A 12 712 27 HOH HOH . K 6 HOH A 13 713 38 HOH HOH . L 6 HOH B 1 501 14 HOH HOH . L 6 HOH B 2 502 1 HOH HOH . L 6 HOH B 3 503 17 HOH HOH . L 6 HOH B 4 504 19 HOH HOH . L 6 HOH B 5 505 20 HOH HOH . L 6 HOH B 6 506 18 HOH HOH . L 6 HOH B 7 507 8 HOH HOH . L 6 HOH B 8 508 9 HOH HOH . L 6 HOH B 9 509 24 HOH HOH . M 6 HOH C 1 701 31 HOH HOH . M 6 HOH C 2 702 10 HOH HOH . M 6 HOH C 3 703 29 HOH HOH . M 6 HOH C 4 704 12 HOH HOH . M 6 HOH C 5 705 34 HOH HOH . M 6 HOH C 6 706 30 HOH HOH . M 6 HOH C 7 707 22 HOH HOH . M 6 HOH C 8 708 33 HOH HOH . M 6 HOH C 9 709 44 HOH HOH . M 6 HOH C 10 710 32 HOH HOH . M 6 HOH C 11 711 48 HOH HOH . M 6 HOH C 12 712 36 HOH HOH . N 6 HOH D 1 501 6 HOH HOH . N 6 HOH D 2 502 2 HOH HOH . N 6 HOH D 3 503 3 HOH HOH . N 6 HOH D 4 504 15 HOH HOH . N 6 HOH D 5 505 42 HOH HOH . N 6 HOH D 6 506 25 HOH HOH . N 6 HOH D 7 507 23 HOH HOH . N 6 HOH D 8 508 16 HOH HOH . N 6 HOH D 9 509 41 HOH HOH . N 6 HOH D 10 510 5 HOH HOH . N 6 HOH D 11 511 46 HOH HOH . N 6 HOH D 12 512 40 HOH HOH . N 6 HOH D 13 513 39 HOH HOH . N 6 HOH D 14 514 4 HOH HOH . N 6 HOH D 15 515 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 4 -33.128 -11.309 20.258 1 131.32 ? PG ANP 402 D 1 HETATM 2 O O1G ANP . . . I 4 -33.962 -12.55 20.398 1 104.44 ? O1G ANP 402 D 1 HETATM 3 O O2G ANP . . . I 4 -33.961 -10.183 19.534 1 99.72 ? O2G ANP 402 D 1 HETATM 4 O O3G ANP . . . I 4 -32.614 -10.818 21.676 1 84.11 ? O3G ANP 402 D 1 HETATM 5 P PB ANP . . . I 4 -30.704 -12.635 20.129 1 57.74 ? PB ANP 402 D 1 HETATM 6 O O1B ANP . . . I 4 -29.643 -13.023 19.156 1 60.6 ? O1B ANP 402 D 1 HETATM 7 O O2B ANP . . . I 4 -30.06 -11.864 21.319 1 69.86 ? O2B ANP 402 D 1 HETATM 8 N N3B ANP . . . I 4 -31.784 -11.66 19.3 1 72.89 ? N3B ANP 402 D 1 HETATM 9 P PA ANP . . . I 4 -31.546 -15.259 19.855 1 49.33 ? PA ANP 402 D 1 HETATM 10 O O1A ANP . . . I 4 -32.735 -16.018 20.306 1 57.83 ? O1A ANP 402 D 1 HETATM 11 O O2A ANP . . . I 4 -31.604 -14.929 18.36 1 52.39 ? O2A ANP 402 D 1 HETATM 12 O O3A ANP . . . I 4 -31.441 -13.901 20.682 1 63.66 ? O3A ANP 402 D 1 HETATM 13 O O5' ANP . . . I 4 -30.223 -16.033 20.236 1 48.86 ? O5' ANP 402 D 1 HETATM 14 C C5' ANP . . . I 4 -29.846 -16.359 21.596 1 44.85 ? C5' ANP 402 D 1 HETATM 15 C C4' ANP . . . I 4 -28.356 -16.583 21.626 1 43.49 ? C4' ANP 402 D 1 HETATM 16 O O4' ANP . . . I 4 -28.061 -17.893 21.103 1 40.38 ? O4' ANP 402 D 1 HETATM 17 C C3' ANP . . . I 4 -27.554 -15.637 20.742 1 51.17 ? C3' ANP 402 D 1 HETATM 18 O O3' ANP . . . I 4 -27.272 -14.399 21.385 1 51.95 ? O3' ANP 402 D 1 HETATM 19 C C2' ANP . . . I 4 -26.28 -16.44 20.46 1 44.11 ? C2' ANP 402 D 1 HETATM 20 O O2' ANP . . . I 4 -25.279 -16.186 21.439 1 48.18 ? O2' ANP 402 D 1 HETATM 21 C C1' ANP . . . I 4 -26.77 -17.895 20.517 1 49.51 ? C1' ANP 402 D 1 HETATM 22 N N9 ANP . . . I 4 -26.838 -18.545 19.207 1 45.52 ? N9 ANP 402 D 1 HETATM 23 C C8 ANP . . . I 4 -27.841 -18.46 18.285 1 42.63 ? C8 ANP 402 D 1 HETATM 24 N N7 ANP . . . I 4 -27.627 -19.151 17.184 1 48.1 ? N7 ANP 402 D 1 HETATM 25 C C5 ANP . . . I 4 -26.392 -19.728 17.416 1 43 ? C5 ANP 402 D 1 HETATM 26 C C6 ANP . . . I 4 -25.581 -20.588 16.623 1 46.7 ? C6 ANP 402 D 1 HETATM 27 N N6 ANP . . . I 4 -25.926 -21.021 15.408 1 30.99 ? N6 ANP 402 D 1 HETATM 28 N N1 ANP . . . I 4 -24.394 -20.982 17.138 1 45.04 ? N1 ANP 402 D 1 HETATM 29 C C2 ANP . . . I 4 -24.045 -20.551 18.354 1 49.33 ? C2 ANP 402 D 1 HETATM 30 N N3 ANP . . . I 4 -24.718 -19.744 19.182 1 44.71 ? N3 ANP 402 D 1 HETATM 31 C C4 ANP . . . I 4 -25.88 -19.372 18.647 1 41.96 ? C4 ANP 402 D 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #