data_9AYA # _model_server_result.job_id i7XyMxq9PstDD-mpyLCsvw _model_server_result.datetime_utc '2024-12-02 04:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9aya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 9AYA # _exptl.entry_id 9AYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.59 _cell.angle_gamma 90 _cell.entry_id 9AYA _cell.length_a 149.725 _cell.length_b 58.202 _cell.length_c 162.347 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 74.8625 29.101 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASN 160 B ASN 195 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc2 B OD2 ASP 173 B ASP 208 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc3 F O1B ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 F O2A ANP . B ANP 402 1_555 G MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 G MG MG . B MG 403 1_555 L O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc6 D OD1 ASN 160 D ASN 195 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc7 D OD2 ASP 173 D ASP 208 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc8 I O1B ANP . D ANP 402 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc9 I O2A ANP . D ANP 402 1_555 J MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 J MG MG . D MG 403 1_555 N O HOH . D HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc11 J MG MG . D MG 403 1_555 N O HOH . D HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9AYA _atom_sites.fract_transf_matrix[1][1] 0.006679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000654 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 A1AHE B 1 401 401 A1AHE 628 . F 4 ANP B 1 402 1 ANP ANP . G 5 MG B 1 403 1 MG MG . H 3 A1AHE D 1 401 401 A1AHE 628 . I 4 ANP D 1 402 2 ANP ANP . J 5 MG D 1 403 2 MG MG . K 6 HOH A 1 701 7 HOH HOH . K 6 HOH A 2 702 49 HOH HOH . K 6 HOH A 3 703 11 HOH HOH . K 6 HOH A 4 704 13 HOH HOH . K 6 HOH A 5 705 35 HOH HOH . K 6 HOH A 6 706 28 HOH HOH . K 6 HOH A 7 707 21 HOH HOH . K 6 HOH A 8 708 47 HOH HOH . K 6 HOH A 9 709 45 HOH HOH . K 6 HOH A 10 710 43 HOH HOH . K 6 HOH A 11 711 37 HOH HOH . K 6 HOH A 12 712 27 HOH HOH . K 6 HOH A 13 713 38 HOH HOH . L 6 HOH B 1 501 14 HOH HOH . L 6 HOH B 2 502 1 HOH HOH . L 6 HOH B 3 503 17 HOH HOH . L 6 HOH B 4 504 19 HOH HOH . L 6 HOH B 5 505 20 HOH HOH . L 6 HOH B 6 506 18 HOH HOH . L 6 HOH B 7 507 8 HOH HOH . L 6 HOH B 8 508 9 HOH HOH . L 6 HOH B 9 509 24 HOH HOH . M 6 HOH C 1 701 31 HOH HOH . M 6 HOH C 2 702 10 HOH HOH . M 6 HOH C 3 703 29 HOH HOH . M 6 HOH C 4 704 12 HOH HOH . M 6 HOH C 5 705 34 HOH HOH . M 6 HOH C 6 706 30 HOH HOH . M 6 HOH C 7 707 22 HOH HOH . M 6 HOH C 8 708 33 HOH HOH . M 6 HOH C 9 709 44 HOH HOH . M 6 HOH C 10 710 32 HOH HOH . M 6 HOH C 11 711 48 HOH HOH . M 6 HOH C 12 712 36 HOH HOH . N 6 HOH D 1 501 6 HOH HOH . N 6 HOH D 2 502 2 HOH HOH . N 6 HOH D 3 503 3 HOH HOH . N 6 HOH D 4 504 15 HOH HOH . N 6 HOH D 5 505 42 HOH HOH . N 6 HOH D 6 506 25 HOH HOH . N 6 HOH D 7 507 23 HOH HOH . N 6 HOH D 8 508 16 HOH HOH . N 6 HOH D 9 509 41 HOH HOH . N 6 HOH D 10 510 5 HOH HOH . N 6 HOH D 11 511 46 HOH HOH . N 6 HOH D 12 512 40 HOH HOH . N 6 HOH D 13 513 39 HOH HOH . N 6 HOH D 14 514 4 HOH HOH . N 6 HOH D 15 515 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x -30.396 _atom_site.Cartn_y -13.665 _atom_site.Cartn_z 16.946 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #