data_9AYH # _model_server_result.job_id D6IecJzbjDiE12nwTKLNQg _model_server_result.datetime_utc '2024-11-14 16:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ayh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2405}' # _entry.id 9AYH # _exptl.entry_id 9AYH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.708 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AYH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 166 A CYS 123 1_555 A SG CYS 702 A CYS 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 303 A CYS 260 1_555 A SG CYS 345 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 334 A CYS 291 1_555 A SG CYS 390 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 1222 A CYS 1459 1_555 A SG CYS 1236 A CYS 1473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 1539 A CYS 1776 1_555 A SG CYS 1545 A CYS 1782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 1584 A CYS 1821 1_555 A SG CYS 1591 A CYS 1828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE2 GLU 421 A GLU 378 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A OE1 GLU 737 A GLU 974 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc3 A OD1 ASP 1267 A ASP 1504 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? # _chem_comp.formula 'C26 H57 N O6 P 1' _chem_comp.formula_weight 510.708 _chem_comp.id LPE _chem_comp.mon_nstd_flag . _chem_comp.name 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LPC-ETHER # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LPE sing 356 n n C1 C2 LPE sing 357 n n C1 H11 LPE sing 358 n n C1 H12 LPE sing 359 n n O1 C11 LPE sing 360 n n C2 O2H LPE sing 361 n n C2 C3 LPE sing 362 n n C2 H21 LPE sing 363 n n O2H HO21 LPE sing 364 n n C3 O3 LPE sing 365 n n C3 H31 LPE sing 366 n n C3 H32 LPE sing 367 n n C11 C12 LPE sing 368 n n C11 H111 LPE sing 369 n n C11 H112 LPE sing 370 n n C12 C13 LPE sing 371 n n C12 H121 LPE sing 372 n n C12 H122 LPE sing 373 n n O3 P LPE sing 374 n n P O31 LPE doub 375 n n P O32 LPE sing 376 n n P O33 LPE sing 377 n n O32 HO31 LPE sing 378 n n O33 C31 LPE sing 379 n n C31 C32 LPE sing 380 n n C31 H311 LPE sing 381 n n C31 H312 LPE sing 382 n n C32 N LPE sing 383 n n C32 H321 LPE sing 384 n n C32 H322 LPE sing 385 n n N C1N LPE sing 386 n n N C2N LPE sing 387 n n N C3N LPE sing 388 n n C1N H1N1 LPE sing 389 n n C1N H1N2 LPE sing 390 n n C1N H1N3 LPE sing 391 n n C2N H2N1 LPE sing 392 n n C2N H2N2 LPE sing 393 n n C2N H2N3 LPE sing 394 n n C3N H3N1 LPE sing 395 n n C3N H3N2 LPE sing 396 n n C3N H3N3 LPE sing 397 n n C13 C14 LPE sing 398 n n C13 H131 LPE sing 399 n n C13 H132 LPE sing 400 n n C14 C15 LPE sing 401 n n C14 H141 LPE sing 402 n n C14 H142 LPE sing 403 n n C15 C16 LPE sing 404 n n C15 H151 LPE sing 405 n n C15 H152 LPE sing 406 n n C16 C17 LPE sing 407 n n C16 H161 LPE sing 408 n n C16 H162 LPE sing 409 n n C17 C18 LPE sing 410 n n C17 H171 LPE sing 411 n n C17 H172 LPE sing 412 n n C18 C19 LPE sing 413 n n C18 H181 LPE sing 414 n n C18 H182 LPE sing 415 n n C19 C20 LPE sing 416 n n C19 H191 LPE sing 417 n n C19 H192 LPE sing 418 n n C20 C21 LPE sing 419 n n C20 H201 LPE sing 420 n n C20 H202 LPE sing 421 n n C21 C22 LPE sing 422 n n C21 H211 LPE sing 423 n n C21 H212 LPE sing 424 n n C22 C23 LPE sing 425 n n C22 H221 LPE sing 426 n n C22 H222 LPE sing 427 n n C23 C24 LPE sing 428 n n C23 H231 LPE sing 429 n n C23 H232 LPE sing 430 n n C24 C25 LPE sing 431 n n C24 H241 LPE sing 432 n n C24 H242 LPE sing 433 n n C25 C26 LPE sing 434 n n C25 H251 LPE sing 435 n n C25 H252 LPE sing 436 n n C26 C27 LPE sing 437 n n C26 H261 LPE sing 438 n n C26 H262 LPE sing 439 n n C27 C28 LPE sing 440 n n C27 H271 LPE sing 441 n n C27 H272 LPE sing 442 n n C28 H281 LPE sing 443 n n C28 H282 LPE sing 444 n n C28 H283 LPE sing 445 n n # _atom_sites.entry_id 9AYH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AHH A 1 2401 1901 A1AHH LIG . C 3 NAG A 1 2402 1 NAG NAG . D 3 NAG A 1 2403 2 NAG NAG . E 4 CA A 1 2404 3 CA CA . F 5 LPE A 1 2405 10 LPE LPE . G 6 Y01 A 1 2406 11 Y01 Y01 . H 7 JL3 A 1 2407 12 JL3 3PE . I 6 Y01 A 1 2408 13 Y01 Y01 . J 7 JL3 A 1 2409 14 JL3 3PE . K 7 JL3 A 1 2410 15 JL3 3PE . L 7 JL3 A 1 2411 16 JL3 3PE . M 6 Y01 A 1 2412 17 Y01 Y01 . N 6 Y01 A 1 2413 18 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPE . . . F 5 146.304 106.354 146.015 1 54.88 ? C1 LPE 2405 A 1 HETATM 2 O O1 LPE . . . F 5 144.956 106.729 145.785 1 62.45 ? O1 LPE 2405 A 1 HETATM 3 C C2 LPE . . . F 5 146.402 105.659 147.35 1 55.43 ? C2 LPE 2405 A 1 HETATM 4 O O2H LPE . . . F 5 147.071 104.418 147.157 1 62.49 ? O2H LPE 2405 A 1 HETATM 5 C C3 LPE . . . F 5 147.137 106.456 148.402 1 54.31 ? C3 LPE 2405 A 1 HETATM 6 C C11 LPE . . . F 5 144.698 108.065 146.189 1 57.98 ? C11 LPE 2405 A 1 HETATM 7 C C12 LPE . . . F 5 144.329 108.878 144.981 1 55.31 ? C12 LPE 2405 A 1 HETATM 8 O O3 LPE . . . F 5 148.126 105.618 149.064 1 65.84 ? O3 LPE 2405 A 1 HETATM 9 P P LPE . . . F 5 148.244 105.654 150.665 1 85.54 ? P LPE 2405 A 1 HETATM 10 O O31 LPE . . . F 5 149.672 105.647 151.127 1 57.91 ? O31 LPE 2405 A 1 HETATM 11 O O32 LPE . . . F 5 147.301 106.701 151.18 1 66.87 ? O32 LPE 2405 A 1 HETATM 12 O O33 LPE . . . F 5 147.654 104.232 151.105 1 64.2 ? O33 LPE 2405 A 1 HETATM 13 C C31 LPE . . . F 5 147.296 103.273 150.084 1 58.03 ? C31 LPE 2405 A 1 HETATM 14 C C32 LPE . . . F 5 146.521 102.171 150.757 1 57.82 ? C32 LPE 2405 A 1 HETATM 15 N N LPE . . . F 5 145.062 102.469 151.021 1 60.28 ? N LPE 2405 A 1 HETATM 16 C C1N LPE . . . F 5 144.404 101.287 151.628 1 61 ? C1N LPE 2405 A 1 HETATM 17 C C2N LPE . . . F 5 144.933 103.623 151.948 1 58.77 ? C2N LPE 2405 A 1 HETATM 18 C C3N LPE . . . F 5 144.393 102.783 149.737 1 51.57 ? C3N LPE 2405 A 1 HETATM 19 C C13 LPE . . . F 5 144.216 108.056 143.725 1 54.06 ? C13 LPE 2405 A 1 HETATM 20 C C14 LPE . . . F 5 143.301 108.677 142.705 1 53.06 ? C14 LPE 2405 A 1 HETATM 21 C C15 LPE . . . F 5 143.018 110.137 142.95 1 58.11 ? C15 LPE 2405 A 1 HETATM 22 C C16 LPE . . . F 5 142.245 110.808 141.848 1 57.71 ? C16 LPE 2405 A 1 HETATM 23 C C17 LPE . . . F 5 142.138 112.3 141.99 1 57.28 ? C17 LPE 2405 A 1 HETATM 24 C C18 LPE . . . F 5 141.699 113.011 140.737 1 56.43 ? C18 LPE 2405 A 1 HETATM 25 C C19 LPE . . . F 5 140.854 112.171 139.813 1 53.1 ? C19 LPE 2405 A 1 HETATM 26 C C20 LPE . . . F 5 140.798 112.669 138.394 1 55.42 ? C20 LPE 2405 A 1 HETATM 27 C C21 LPE . . . F 5 140.144 114.016 138.242 1 56.05 ? C21 LPE 2405 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #