data_9AYH # _model_server_result.job_id K_Xuy0BqcBltmW4cwfeRCw _model_server_result.datetime_utc '2024-11-22 07:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ayh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2408}' # _entry.id 9AYH # _exptl.entry_id 9AYH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AYH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 I N N ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 166 A CYS 123 1_555 A SG CYS 702 A CYS 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 303 A CYS 260 1_555 A SG CYS 345 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 334 A CYS 291 1_555 A SG CYS 390 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 1222 A CYS 1459 1_555 A SG CYS 1236 A CYS 1473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 1539 A CYS 1776 1_555 A SG CYS 1545 A CYS 1782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 1584 A CYS 1821 1_555 A SG CYS 1591 A CYS 1828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE2 GLU 421 A GLU 378 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A OE1 GLU 737 A GLU 974 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc3 A OD1 ASP 1267 A ASP 1504 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 658 n n CBA CAB Y01 sing 659 n n CBA CAN Y01 sing 660 n n CAN CAJ Y01 sing 661 n n CAJ CAO Y01 sing 662 n n CAO CBB Y01 sing 663 n n CBB CAC Y01 sing 664 n n CBB CBE Y01 sing 665 n n CBE CAP Y01 sing 666 n n CBE CBI Y01 sing 667 n n CAP CAQ Y01 sing 668 n n CAQ CBG Y01 sing 669 n n CBG CBI Y01 sing 670 n n CBG CBD Y01 sing 671 n n CBI CAE Y01 sing 672 n n CBI CAU Y01 sing 673 n n CAU CAS Y01 sing 674 n n CAS CBF Y01 sing 675 n n CBF CBD Y01 sing 676 n n CBF CBH Y01 sing 677 n n CBD CAK Y01 sing 678 n n CAK CAI Y01 sing 679 n n CAI CAZ Y01 doub 680 n n CAZ CAV Y01 sing 681 n n CAZ CBH Y01 sing 682 n n CAV CBC Y01 sing 683 n n CBH CAD Y01 sing 684 n n CBH CAT Y01 sing 685 n n CAT CAR Y01 sing 686 n n CAR CBC Y01 sing 687 n n CBC OAW Y01 sing 688 n n OAW CAY Y01 sing 689 n n CAY OAG Y01 doub 690 n n CAY CAM Y01 sing 691 n n CAM CAL Y01 sing 692 n n CAL CAX Y01 sing 693 n n CAX OAH Y01 sing 694 n n CAX OAF Y01 doub 695 n n CAA HAA1 Y01 sing 696 n n CAA HAA2 Y01 sing 697 n n CAA HAA3 Y01 sing 698 n n CBA HBA Y01 sing 699 n n CAB HAB1 Y01 sing 700 n n CAB HAB2 Y01 sing 701 n n CAB HAB3 Y01 sing 702 n n CAN HAN1 Y01 sing 703 n n CAN HAN2 Y01 sing 704 n n CAJ HAJ1 Y01 sing 705 n n CAJ HAJ2 Y01 sing 706 n n CAO HAO1 Y01 sing 707 n n CAO HAO2 Y01 sing 708 n n CBB HBB Y01 sing 709 n n CAC HAC1 Y01 sing 710 n n CAC HAC2 Y01 sing 711 n n CAC HAC3 Y01 sing 712 n n CBE HBE Y01 sing 713 n n CAP HAP1 Y01 sing 714 n n CAP HAP2 Y01 sing 715 n n CAQ HAQ1 Y01 sing 716 n n CAQ HAQ2 Y01 sing 717 n n CBG HBG Y01 sing 718 n n CBD HBD Y01 sing 719 n n CAE HAE1 Y01 sing 720 n n CAE HAE2 Y01 sing 721 n n CAE HAE3 Y01 sing 722 n n CAU HAU1 Y01 sing 723 n n CAU HAU2 Y01 sing 724 n n CAS HAS1 Y01 sing 725 n n CAS HAS2 Y01 sing 726 n n CBF HBF Y01 sing 727 n n CAK HAK1 Y01 sing 728 n n CAK HAK2 Y01 sing 729 n n CAI HAI Y01 sing 730 n n CAV HAV1 Y01 sing 731 n n CAV HAV2 Y01 sing 732 n n CBC HBC Y01 sing 733 n n CAD HAD1 Y01 sing 734 n n CAD HAD2 Y01 sing 735 n n CAD HAD3 Y01 sing 736 n n CAT HAT1 Y01 sing 737 n n CAT HAT2 Y01 sing 738 n n CAR HAR1 Y01 sing 739 n n CAR HAR2 Y01 sing 740 n n CAM HAM1 Y01 sing 741 n n CAM HAM2 Y01 sing 742 n n CAL HAL1 Y01 sing 743 n n CAL HAL2 Y01 sing 744 n n OAH HAH Y01 sing 745 n n # _atom_sites.entry_id 9AYH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AHH A 1 2401 1901 A1AHH LIG . C 3 NAG A 1 2402 1 NAG NAG . D 3 NAG A 1 2403 2 NAG NAG . E 4 CA A 1 2404 3 CA CA . F 5 LPE A 1 2405 10 LPE LPE . G 6 Y01 A 1 2406 11 Y01 Y01 . H 7 JL3 A 1 2407 12 JL3 3PE . I 6 Y01 A 1 2408 13 Y01 Y01 . J 7 JL3 A 1 2409 14 JL3 3PE . K 7 JL3 A 1 2410 15 JL3 3PE . L 7 JL3 A 1 2411 16 JL3 3PE . M 6 Y01 A 1 2412 17 Y01 Y01 . N 6 Y01 A 1 2413 18 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 6 110.411 111.105 146.67 1 74.72 ? CAA Y01 2408 A 1 HETATM 2 C CBA Y01 . . . I 6 110.393 110.865 148.168 1 78.3 ? CBA Y01 2408 A 1 HETATM 3 C CAB Y01 . . . I 6 111.352 111.815 148.862 1 74.98 ? CAB Y01 2408 A 1 HETATM 4 C CAN Y01 . . . I 6 108.984 110.996 148.735 1 74.27 ? CAN Y01 2408 A 1 HETATM 5 C CAJ Y01 . . . I 6 108.576 109.934 149.713 1 74.66 ? CAJ Y01 2408 A 1 HETATM 6 C CAO Y01 . . . I 6 109.591 109.708 150.794 1 75.17 ? CAO Y01 2408 A 1 HETATM 7 C CBB Y01 . . . I 6 109.038 109.164 152.12 1 72.76 ? CBB Y01 2408 A 1 HETATM 8 C CAC Y01 . . . I 6 108.036 108.043 151.866 1 74.98 ? CAC Y01 2408 A 1 HETATM 9 C CBE Y01 . . . I 6 110.179 108.721 153.054 1 76.56 ? CBE Y01 2408 A 1 HETATM 10 C CAP Y01 . . . I 6 111.503 109.482 152.789 1 77.5 ? CAP Y01 2408 A 1 HETATM 11 C CAQ Y01 . . . I 6 112.396 109.24 154.015 1 73.14 ? CAQ Y01 2408 A 1 HETATM 12 C CBG Y01 . . . I 6 111.466 108.649 155.071 1 68.04 ? CBG Y01 2408 A 1 HETATM 13 C CBI Y01 . . . I 6 110.021 108.877 154.593 1 76.37 ? CBI Y01 2408 A 1 HETATM 14 C CAE Y01 . . . I 6 109.465 110.276 154.909 1 78.39 ? CAE Y01 2408 A 1 HETATM 15 C CAU Y01 . . . I 6 109.225 107.813 155.347 1 77.38 ? CAU Y01 2408 A 1 HETATM 16 C CAS Y01 . . . I 6 109.326 108.011 156.868 1 76.79 ? CAS Y01 2408 A 1 HETATM 17 C CBF Y01 . . . I 6 110.759 108.173 157.419 1 72.25 ? CBF Y01 2408 A 1 HETATM 18 C CBD Y01 . . . I 6 111.666 109.033 156.523 1 69.56 ? CBD Y01 2408 A 1 HETATM 19 C CAK Y01 . . . I 6 113.113 108.838 156.942 1 78.22 ? CAK Y01 2408 A 1 HETATM 20 C CAI Y01 . . . I 6 113.271 108.899 158.424 1 77.07 ? CAI Y01 2408 A 1 HETATM 21 C CAZ Y01 . . . I 6 112.265 108.955 159.28 1 77.31 ? CAZ Y01 2408 A 1 HETATM 22 C CAV Y01 . . . I 6 112.511 109.257 160.739 1 74.4 ? CAV Y01 2408 A 1 HETATM 23 C CBH Y01 . . . I 6 110.818 108.67 158.892 1 78.94 ? CBH Y01 2408 A 1 HETATM 24 C CAD Y01 . . . I 6 109.996 109.953 159.106 1 74.48 ? CAD Y01 2408 A 1 HETATM 25 C CAT Y01 . . . I 6 110.294 107.572 159.843 1 79.96 ? CAT Y01 2408 A 1 HETATM 26 C CAR Y01 . . . I 6 110.536 107.882 161.322 1 75.34 ? CAR Y01 2408 A 1 HETATM 27 C CBC Y01 . . . I 6 111.996 108.128 161.602 1 77.1 ? CBC Y01 2408 A 1 HETATM 28 O OAW Y01 . . . I 6 112.177 108.479 163.008 1 80.96 ? OAW Y01 2408 A 1 HETATM 29 C CAY Y01 . . . I 6 111.985 109.731 163.411 1 81.17 ? CAY Y01 2408 A 1 HETATM 30 O OAG Y01 . . . I 6 110.969 110.342 163.248 1 77.93 ? OAG Y01 2408 A 1 HETATM 31 C CAM Y01 . . . I 6 113.19 110.269 164.121 1 80.12 ? CAM Y01 2408 A 1 HETATM 32 C CAL Y01 . . . I 6 114.02 111.277 163.352 1 79.38 ? CAL Y01 2408 A 1 HETATM 33 C CAX Y01 . . . I 6 115.403 111.521 163.931 1 81.68 ? CAX Y01 2408 A 1 HETATM 34 O OAH Y01 . . . I 6 116.283 111.964 163.174 1 77.97 ? OAH Y01 2408 A 1 HETATM 35 O OAF Y01 . . . I 6 115.6 111.26 165.134 1 77.59 ? OAF Y01 2408 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #