data_9AYH
#
_model_server_result.job_id            ALIUMXJ39iu6gC5kQkAWVQ 
_model_server_result.datetime_utc      '2024-11-22 07:02:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ayh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":2412}' 
#
_entry.id    9AYH 
#
_exptl.entry_id    9AYH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9AYH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 I N N 
? 6 M N N 
? 6 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 166 A CYS 123 1_555 A SG CYS 702 A CYS 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 303 A CYS 260 1_555 A SG CYS 345 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 334 A CYS 291 1_555 A SG CYS 390 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 1222 A CYS 1459 1_555 A SG CYS 1236 A CYS 1473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 1539 A CYS 1776 1_555 A SG CYS 1545 A CYS 1782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 1584 A CYS 1821 1_555 A SG CYS 1591 A CYS 1828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE2 GLU 421 A GLU 378 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc2 A OE1 GLU 737 A GLU 974 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc3 A OD1 ASP 1267 A ASP 1504 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 658 n n 
CBA CAB Y01 sing 659 n n 
CBA CAN Y01 sing 660 n n 
CAN CAJ Y01 sing 661 n n 
CAJ CAO Y01 sing 662 n n 
CAO CBB Y01 sing 663 n n 
CBB CAC Y01 sing 664 n n 
CBB CBE Y01 sing 665 n n 
CBE CAP Y01 sing 666 n n 
CBE CBI Y01 sing 667 n n 
CAP CAQ Y01 sing 668 n n 
CAQ CBG Y01 sing 669 n n 
CBG CBI Y01 sing 670 n n 
CBG CBD Y01 sing 671 n n 
CBI CAE Y01 sing 672 n n 
CBI CAU Y01 sing 673 n n 
CAU CAS Y01 sing 674 n n 
CAS CBF Y01 sing 675 n n 
CBF CBD Y01 sing 676 n n 
CBF CBH Y01 sing 677 n n 
CBD CAK Y01 sing 678 n n 
CAK CAI Y01 sing 679 n n 
CAI CAZ Y01 doub 680 n n 
CAZ CAV Y01 sing 681 n n 
CAZ CBH Y01 sing 682 n n 
CAV CBC Y01 sing 683 n n 
CBH CAD Y01 sing 684 n n 
CBH CAT Y01 sing 685 n n 
CAT CAR Y01 sing 686 n n 
CAR CBC Y01 sing 687 n n 
CBC OAW Y01 sing 688 n n 
OAW CAY Y01 sing 689 n n 
CAY OAG Y01 doub 690 n n 
CAY CAM Y01 sing 691 n n 
CAM CAL Y01 sing 692 n n 
CAL CAX Y01 sing 693 n n 
CAX OAH Y01 sing 694 n n 
CAX OAF Y01 doub 695 n n 
CAA HAA1 Y01 sing 696 n n 
CAA HAA2 Y01 sing 697 n n 
CAA HAA3 Y01 sing 698 n n 
CBA HBA Y01 sing 699 n n 
CAB HAB1 Y01 sing 700 n n 
CAB HAB2 Y01 sing 701 n n 
CAB HAB3 Y01 sing 702 n n 
CAN HAN1 Y01 sing 703 n n 
CAN HAN2 Y01 sing 704 n n 
CAJ HAJ1 Y01 sing 705 n n 
CAJ HAJ2 Y01 sing 706 n n 
CAO HAO1 Y01 sing 707 n n 
CAO HAO2 Y01 sing 708 n n 
CBB HBB Y01 sing 709 n n 
CAC HAC1 Y01 sing 710 n n 
CAC HAC2 Y01 sing 711 n n 
CAC HAC3 Y01 sing 712 n n 
CBE HBE Y01 sing 713 n n 
CAP HAP1 Y01 sing 714 n n 
CAP HAP2 Y01 sing 715 n n 
CAQ HAQ1 Y01 sing 716 n n 
CAQ HAQ2 Y01 sing 717 n n 
CBG HBG Y01 sing 718 n n 
CBD HBD Y01 sing 719 n n 
CAE HAE1 Y01 sing 720 n n 
CAE HAE2 Y01 sing 721 n n 
CAE HAE3 Y01 sing 722 n n 
CAU HAU1 Y01 sing 723 n n 
CAU HAU2 Y01 sing 724 n n 
CAS HAS1 Y01 sing 725 n n 
CAS HAS2 Y01 sing 726 n n 
CBF HBF Y01 sing 727 n n 
CAK HAK1 Y01 sing 728 n n 
CAK HAK2 Y01 sing 729 n n 
CAI HAI Y01 sing 730 n n 
CAV HAV1 Y01 sing 731 n n 
CAV HAV2 Y01 sing 732 n n 
CBC HBC Y01 sing 733 n n 
CAD HAD1 Y01 sing 734 n n 
CAD HAD2 Y01 sing 735 n n 
CAD HAD3 Y01 sing 736 n n 
CAT HAT1 Y01 sing 737 n n 
CAT HAT2 Y01 sing 738 n n 
CAR HAR1 Y01 sing 739 n n 
CAR HAR2 Y01 sing 740 n n 
CAM HAM1 Y01 sing 741 n n 
CAM HAM2 Y01 sing 742 n n 
CAL HAL1 Y01 sing 743 n n 
CAL HAL2 Y01 sing 744 n n 
OAH HAH Y01 sing 745 n n 
#
_atom_sites.entry_id                     9AYH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1AHH A 1 2401 1901 A1AHH LIG . 
C 3 NAG A 1 2402 1 NAG NAG . 
D 3 NAG A 1 2403 2 NAG NAG . 
E 4 CA A 1 2404 3 CA CA . 
F 5 LPE A 1 2405 10 LPE LPE . 
G 6 Y01 A 1 2406 11 Y01 Y01 . 
H 7 JL3 A 1 2407 12 JL3 3PE . 
I 6 Y01 A 1 2408 13 Y01 Y01 . 
J 7 JL3 A 1 2409 14 JL3 3PE . 
K 7 JL3 A 1 2410 15 JL3 3PE . 
L 7 JL3 A 1 2411 16 JL3 3PE . 
M 6 Y01 A 1 2412 17 Y01 Y01 . 
N 6 Y01 A 1 2413 18 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . M 6 155.28 145.95 142.884 1 69.18 ? CAA Y01 2412 A 1 
HETATM 2 C CBA Y01 . . . M 6 155.643 147.414 142.718 1 77.09 ? CBA Y01 2412 A 1 
HETATM 3 C CAB Y01 . . . M 6 154.397 148.235 142.45 1 73.51 ? CAB Y01 2412 A 1 
HETATM 4 C CAN Y01 . . . M 6 156.393 147.95 143.931 1 78.82 ? CAN Y01 2412 A 1 
HETATM 5 C CAJ Y01 . . . M 6 157.513 147.085 144.439 1 72.42 ? CAJ Y01 2412 A 1 
HETATM 6 C CAO Y01 . . . M 6 157.167 146.377 145.724 1 69.05 ? CAO Y01 2412 A 1 
HETATM 7 C CBB Y01 . . . M 6 158.318 146.239 146.73 1 69.03 ? CBB Y01 2412 A 1 
HETATM 8 C CAC Y01 . . . M 6 158.759 147.619 147.214 1 71.55 ? CAC Y01 2412 A 1 
HETATM 9 C CBE Y01 . . . M 6 157.925 145.295 147.883 1 73.48 ? CBE Y01 2412 A 1 
HETATM 10 C CAP Y01 . . . M 6 157.693 143.841 147.388 1 73.83 ? CAP Y01 2412 A 1 
HETATM 11 C CAQ Y01 . . . M 6 158.387 142.894 148.382 1 70.62 ? CAQ Y01 2412 A 1 
HETATM 12 C CBG Y01 . . . M 6 158.572 143.751 149.627 1 70.38 ? CBG Y01 2412 A 1 
HETATM 13 C CBI Y01 . . . M 6 158.891 145.158 149.098 1 72.76 ? CBI Y01 2412 A 1 
HETATM 14 C CAE Y01 . . . M 6 160.348 145.304 148.628 1 73.58 ? CAE Y01 2412 A 1 
HETATM 15 C CAU Y01 . . . M 6 158.623 146.08 150.286 1 70.22 ? CAU Y01 2412 A 1 
HETATM 16 C CAS Y01 . . . M 6 159.547 145.749 151.462 1 71.63 ? CAS Y01 2412 A 1 
HETATM 17 C CBF Y01 . . . M 6 159.504 144.275 151.896 1 75.78 ? CBF Y01 2412 A 1 
HETATM 18 C CBD Y01 . . . M 6 159.524 143.285 150.717 1 69.71 ? CBD Y01 2412 A 1 
HETATM 19 C CAK Y01 . . . M 6 159.149 141.9 151.232 1 69.87 ? CAK Y01 2412 A 1 
HETATM 20 C CAI Y01 . . . M 6 159.842 141.575 152.517 1 72.34 ? CAI Y01 2412 A 1 
HETATM 21 C CAZ Y01 . . . M 6 160.557 142.43 153.233 1 71.15 ? CAZ Y01 2412 A 1 
HETATM 22 C CAV Y01 . . . M 6 161.376 141.965 154.418 1 68.12 ? CAV Y01 2412 A 1 
HETATM 23 C CBH Y01 . . . M 6 160.593 143.924 152.945 1 73.92 ? CBH Y01 2412 A 1 
HETATM 24 C CAD Y01 . . . M 6 162.003 144.292 152.453 1 72.76 ? CAD Y01 2412 A 1 
HETATM 25 C CAT Y01 . . . M 6 160.291 144.667 154.262 1 71.68 ? CAT Y01 2412 A 1 
HETATM 26 C CAR Y01 . . . M 6 161.157 144.201 155.43 1 69.96 ? CAR Y01 2412 A 1 
HETATM 27 C CBC Y01 . . . M 6 160.991 142.724 155.665 1 70.19 ? CBC Y01 2412 A 1 
HETATM 28 O OAW Y01 . . . M 6 161.832 142.283 156.778 1 74.36 ? OAW Y01 2412 A 1 
HETATM 29 C CAY Y01 . . . M 6 163.161 142.294 156.671 1 74.96 ? CAY Y01 2412 A 1 
HETATM 30 O OAG Y01 . . . M 6 163.804 143.246 156.341 1 76.95 ? OAG Y01 2412 A 1 
HETATM 31 C CAM Y01 . . . M 6 163.765 140.978 157.063 1 70.14 ? CAM Y01 2412 A 1 
HETATM 32 C CAL Y01 . . . M 6 165.022 141.099 157.907 1 71.97 ? CAL Y01 2412 A 1 
HETATM 33 C CAX Y01 . . . M 6 165.714 139.786 158.234 1 77.43 ? CAX Y01 2412 A 1 
HETATM 34 O OAH Y01 . . . M 6 166.45 139.746 159.239 1 75.39 ? OAH Y01 2412 A 1 
HETATM 35 O OAF Y01 . . . M 6 165.522 138.811 157.482 1 79.73 ? OAF Y01 2412 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#