data_9AYK # _model_server_result.job_id THjL_AKUsRV-_YaagY1lqA _model_server_result.datetime_utc '2024-11-27 15:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ayk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 9AYK # _exptl.entry_id 9AYK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 369.329 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-dichloro-N-{[(1R,5S,6r)-3-(3,3-dimethylbutyl)-3-azabicyclo[3.1.0]hexan-6-yl]methyl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AYK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 166 A CYS 123 1_555 A SG CYS 702 A CYS 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 303 A CYS 260 1_555 A SG CYS 345 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 334 A CYS 291 1_555 A SG CYS 390 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 1222 A CYS 1459 1_555 A SG CYS 1236 A CYS 1473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 1539 A CYS 1776 1_555 A SG CYS 1545 A CYS 1782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 1584 A CYS 1821 1_555 A SG CYS 1591 A CYS 1828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE2 GLU 421 A GLU 378 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OD2 ASP 1267 A ASP 1504 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? # _chem_comp.formula 'C19 H26 Cl2 N2 O' _chem_comp.formula_weight 369.329 _chem_comp.id A1AHJ _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-dichloro-N-{[(1R,5S,6r)-3-(3,3-dimethylbutyl)-3-azabicyclo[3.1.0]hexan-6-yl]methyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C14 A1AHJ sing 1 n n C17 C14 A1AHJ sing 2 n n C14 C16 A1AHJ sing 3 n n C14 C13 A1AHJ sing 4 n n C13 C12 A1AHJ sing 5 n n C12 N04 A1AHJ sing 6 n n N04 C10 A1AHJ sing 7 n n N04 C09 A1AHJ sing 8 n n C10 C07 A1AHJ sing 9 n n C09 C06 A1AHJ sing 10 n n C07 C06 A1AHJ sing 11 n n C07 C08 A1AHJ sing 12 n n C06 C08 A1AHJ sing 13 n n C08 C11 A1AHJ sing 14 n n CL2 C23 A1AHJ sing 15 n n O03 C15 A1AHJ doub 16 n n C20 C23 A1AHJ doub 17 n y C20 C19 A1AHJ sing 18 n y C23 C24 A1AHJ sing 19 n y C15 C19 A1AHJ sing 20 n n C15 N05 A1AHJ sing 21 n n C11 N05 A1AHJ sing 22 n n C19 C21 A1AHJ doub 23 n y C24 C22 A1AHJ doub 24 n y C21 C22 A1AHJ sing 25 n y C22 CL1 A1AHJ sing 26 n n C10 H1 A1AHJ sing 27 n n C10 H2 A1AHJ sing 28 n n C13 H3 A1AHJ sing 29 n n C13 H4 A1AHJ sing 30 n n C17 H5 A1AHJ sing 31 n n C17 H6 A1AHJ sing 32 n n C17 H7 A1AHJ sing 33 n n C20 H8 A1AHJ sing 34 n n C21 H9 A1AHJ sing 35 n n C24 H10 A1AHJ sing 36 n n C06 H11 A1AHJ sing 37 n n C07 H12 A1AHJ sing 38 n n C08 H13 A1AHJ sing 39 n n C09 H14 A1AHJ sing 40 n n C09 H15 A1AHJ sing 41 n n C11 H16 A1AHJ sing 42 n n C11 H17 A1AHJ sing 43 n n C12 H18 A1AHJ sing 44 n n C12 H19 A1AHJ sing 45 n n C16 H20 A1AHJ sing 46 n n C16 H21 A1AHJ sing 47 n n C16 H22 A1AHJ sing 48 n n C18 H23 A1AHJ sing 49 n n C18 H24 A1AHJ sing 50 n n C18 H25 A1AHJ sing 51 n n N05 H27 A1AHJ sing 52 n n # _atom_sites.entry_id 9AYK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AHJ A 1 2401 1901 A1AHJ LIG . C 3 NAG A 1 2402 1 NAG NAG . D 3 NAG A 1 2403 2 NAG NAG . E 4 CA A 1 2404 3 CA CA . F 5 LPE A 1 2405 10 LPE LPE . G 6 Y01 A 1 2406 11 Y01 Y01 . H 7 JL3 A 1 2407 12 JL3 3PE . I 6 Y01 A 1 2408 13 Y01 Y01 . J 7 JL3 A 1 2409 14 JL3 3PE . K 7 JL3 A 1 2410 15 JL3 3PE . L 7 JL3 A 1 2411 16 JL3 3PE . M 6 Y01 A 1 2412 17 Y01 Y01 . N 6 Y01 A 1 2413 18 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1AHJ . . . B 2 130.791 131.36 139.375 1 44.72 ? C10 A1AHJ 2401 A 1 HETATM 2 C C13 A1AHJ . . . B 2 131.778 131.665 136.777 1 49.29 ? C13 A1AHJ 2401 A 1 HETATM 3 C C15 A1AHJ . . . B 2 129.357 135.067 143.291 1 37.08 ? C15 A1AHJ 2401 A 1 HETATM 4 C C17 A1AHJ . . . B 2 132.337 133.588 135.197 1 43.65 ? C17 A1AHJ 2401 A 1 HETATM 5 C C20 A1AHJ . . . B 2 126.931 135.783 142.915 1 43.61 ? C20 A1AHJ 2401 A 1 HETATM 6 C C21 A1AHJ . . . B 2 128.478 137.396 144.351 1 39.37 ? C21 A1AHJ 2401 A 1 HETATM 7 C C22 A1AHJ . . . B 2 127.282 138.343 144.501 1 48.75 ? C22 A1AHJ 2401 A 1 HETATM 8 C C24 A1AHJ . . . B 2 125.941 138.012 143.864 1 46.95 ? C24 A1AHJ 2401 A 1 HETATM 9 C C06 A1AHJ . . . B 2 131.075 133.068 141.08 1 39.97 ? C06 A1AHJ 2401 A 1 HETATM 10 C C07 A1AHJ . . . B 2 130.672 131.636 140.911 1 44.33 ? C07 A1AHJ 2401 A 1 HETATM 11 C C08 A1AHJ . . . B 2 129.865 132.555 141.784 1 44.77 ? C08 A1AHJ 2401 A 1 HETATM 12 C C09 A1AHJ . . . B 2 131.632 133.478 139.93 1 39.87 ? C09 A1AHJ 2401 A 1 HETATM 13 C C11 A1AHJ . . . B 2 130.066 132.63 143.322 1 43.1 ? C11 A1AHJ 2401 A 1 HETATM 14 C C12 A1AHJ . . . B 2 132.125 132.349 138.134 1 51.15 ? C12 A1AHJ 2401 A 1 HETATM 15 C C14 A1AHJ . . . B 2 132.741 132.165 135.65 1 49.55 ? C14 A1AHJ 2401 A 1 HETATM 16 C C16 A1AHJ . . . B 2 134.209 132.191 136.137 1 43.11 ? C16 A1AHJ 2401 A 1 HETATM 17 C C18 A1AHJ . . . B 2 132.618 131.183 134.462 1 47.71 ? C18 A1AHJ 2401 A 1 HETATM 18 C C19 A1AHJ . . . B 2 128.275 136.106 143.558 1 39.2 ? C19 A1AHJ 2401 A 1 HETATM 19 C C23 A1AHJ . . . B 2 125.763 136.737 143.071 1 47.97 ? C23 A1AHJ 2401 A 1 HETATM 20 N N04 A1AHJ . . . B 2 131.192 132.472 138.804 1 49.43 ? N04 A1AHJ 2401 A 1 HETATM 21 N N05 A1AHJ . . . B 2 129.099 133.676 143.643 1 43.68 ? N05 A1AHJ 2401 A 1 HETATM 22 O O03 A1AHJ . . . B 2 130.353 135.389 142.758 1 41.03 ? O03 A1AHJ 2401 A 1 HETATM 23 CL CL1 A1AHJ . . . B 2 127.357 139.872 145.394 1 67.09 ? CL1 A1AHJ 2401 A 1 HETATM 24 CL CL2 A1AHJ . . . B 2 124.183 136.399 142.346 1 69.09 ? CL2 A1AHJ 2401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #