data_9AYL # _model_server_result.job_id VC-TYf2G4pTgJrCh_nHSEg _model_server_result.datetime_utc '2024-11-08 01:10:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ayl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2406}' # _entry.id 9AYL # _exptl.entry_id 9AYL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AYL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 I N N ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 166 A CYS 123 1_555 A SG CYS 702 A CYS 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 303 A CYS 260 1_555 A SG CYS 345 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 334 A CYS 291 1_555 A SG CYS 390 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 1222 A CYS 1459 1_555 A SG CYS 1236 A CYS 1473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 1539 A CYS 1776 1_555 A SG CYS 1545 A CYS 1782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 1584 A CYS 1821 1_555 A SG CYS 1591 A CYS 1828 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE2 GLU 421 A GLU 378 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A OD2 ASP 1267 A ASP 1504 1_555 E CA CA . A CA 2404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 660 n n CBA CAB Y01 sing 661 n n CBA CAN Y01 sing 662 n n CAN CAJ Y01 sing 663 n n CAJ CAO Y01 sing 664 n n CAO CBB Y01 sing 665 n n CBB CAC Y01 sing 666 n n CBB CBE Y01 sing 667 n n CBE CAP Y01 sing 668 n n CBE CBI Y01 sing 669 n n CAP CAQ Y01 sing 670 n n CAQ CBG Y01 sing 671 n n CBG CBI Y01 sing 672 n n CBG CBD Y01 sing 673 n n CBI CAE Y01 sing 674 n n CBI CAU Y01 sing 675 n n CAU CAS Y01 sing 676 n n CAS CBF Y01 sing 677 n n CBF CBD Y01 sing 678 n n CBF CBH Y01 sing 679 n n CBD CAK Y01 sing 680 n n CAK CAI Y01 sing 681 n n CAI CAZ Y01 doub 682 n n CAZ CAV Y01 sing 683 n n CAZ CBH Y01 sing 684 n n CAV CBC Y01 sing 685 n n CBH CAD Y01 sing 686 n n CBH CAT Y01 sing 687 n n CAT CAR Y01 sing 688 n n CAR CBC Y01 sing 689 n n CBC OAW Y01 sing 690 n n OAW CAY Y01 sing 691 n n CAY OAG Y01 doub 692 n n CAY CAM Y01 sing 693 n n CAM CAL Y01 sing 694 n n CAL CAX Y01 sing 695 n n CAX OAH Y01 sing 696 n n CAX OAF Y01 doub 697 n n CAA HAA1 Y01 sing 698 n n CAA HAA2 Y01 sing 699 n n CAA HAA3 Y01 sing 700 n n CBA HBA Y01 sing 701 n n CAB HAB1 Y01 sing 702 n n CAB HAB2 Y01 sing 703 n n CAB HAB3 Y01 sing 704 n n CAN HAN1 Y01 sing 705 n n CAN HAN2 Y01 sing 706 n n CAJ HAJ1 Y01 sing 707 n n CAJ HAJ2 Y01 sing 708 n n CAO HAO1 Y01 sing 709 n n CAO HAO2 Y01 sing 710 n n CBB HBB Y01 sing 711 n n CAC HAC1 Y01 sing 712 n n CAC HAC2 Y01 sing 713 n n CAC HAC3 Y01 sing 714 n n CBE HBE Y01 sing 715 n n CAP HAP1 Y01 sing 716 n n CAP HAP2 Y01 sing 717 n n CAQ HAQ1 Y01 sing 718 n n CAQ HAQ2 Y01 sing 719 n n CBG HBG Y01 sing 720 n n CBD HBD Y01 sing 721 n n CAE HAE1 Y01 sing 722 n n CAE HAE2 Y01 sing 723 n n CAE HAE3 Y01 sing 724 n n CAU HAU1 Y01 sing 725 n n CAU HAU2 Y01 sing 726 n n CAS HAS1 Y01 sing 727 n n CAS HAS2 Y01 sing 728 n n CBF HBF Y01 sing 729 n n CAK HAK1 Y01 sing 730 n n CAK HAK2 Y01 sing 731 n n CAI HAI Y01 sing 732 n n CAV HAV1 Y01 sing 733 n n CAV HAV2 Y01 sing 734 n n CBC HBC Y01 sing 735 n n CAD HAD1 Y01 sing 736 n n CAD HAD2 Y01 sing 737 n n CAD HAD3 Y01 sing 738 n n CAT HAT1 Y01 sing 739 n n CAT HAT2 Y01 sing 740 n n CAR HAR1 Y01 sing 741 n n CAR HAR2 Y01 sing 742 n n CAM HAM1 Y01 sing 743 n n CAM HAM2 Y01 sing 744 n n CAL HAL1 Y01 sing 745 n n CAL HAL2 Y01 sing 746 n n OAH HAH Y01 sing 747 n n # _atom_sites.entry_id 9AYL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AHK A 1 2401 1901 A1AHK LIG . C 3 NAG A 1 2402 1 NAG NAG . D 3 NAG A 1 2403 2 NAG NAG . E 4 CA A 1 2404 3 CA CA . F 5 LPE A 1 2405 10 LPE LPE . G 6 Y01 A 1 2406 11 Y01 Y01 . H 7 JL3 A 1 2407 12 JL3 3PE . I 6 Y01 A 1 2408 13 Y01 Y01 . J 7 JL3 A 1 2409 14 JL3 3PE . K 7 JL3 A 1 2410 15 JL3 3PE . L 7 JL3 A 1 2411 16 JL3 3PE . M 6 Y01 A 1 2412 17 Y01 Y01 . N 6 Y01 A 1 2413 18 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 6 150.635 108.023 136.475 1 78.38 ? CAA Y01 2406 A 1 HETATM 2 C CBA Y01 . . . G 6 151.897 107.19 136.646 1 75.42 ? CBA Y01 2406 A 1 HETATM 3 C CAB Y01 . . . G 6 152.737 107.256 135.38 1 72.85 ? CAB Y01 2406 A 1 HETATM 4 C CAN Y01 . . . G 6 151.57 105.739 137.01 1 68.56 ? CAN Y01 2406 A 1 HETATM 5 C CAJ Y01 . . . G 6 150.521 105.543 138.082 1 62.7 ? CAJ Y01 2406 A 1 HETATM 6 C CAO Y01 . . . G 6 150.881 106.153 139.419 1 71.74 ? CAO Y01 2406 A 1 HETATM 7 C CBB Y01 . . . G 6 151.638 105.227 140.385 1 77.19 ? CBB Y01 2406 A 1 HETATM 8 C CAC Y01 . . . G 6 153.144 105.352 140.176 1 74.54 ? CAC Y01 2406 A 1 HETATM 9 C CBE Y01 . . . G 6 151.203 105.487 141.84 1 72.38 ? CBE Y01 2406 A 1 HETATM 10 C CAP Y01 . . . G 6 149.673 105.283 142.034 1 69.97 ? CAP Y01 2406 A 1 HETATM 11 C CAQ Y01 . . . G 6 149.485 104.498 143.343 1 72.61 ? CAQ Y01 2406 A 1 HETATM 12 C CBG Y01 . . . G 6 150.777 104.791 144.092 1 69.7 ? CBG Y01 2406 A 1 HETATM 13 C CBI Y01 . . . G 6 151.859 104.675 143.001 1 71.41 ? CBI Y01 2406 A 1 HETATM 14 C CAE Y01 . . . G 6 152.074 103.214 142.564 1 70.24 ? CAE Y01 2406 A 1 HETATM 15 C CAU Y01 . . . G 6 153.135 105.262 143.614 1 69.44 ? CAU Y01 2406 A 1 HETATM 16 C CAS Y01 . . . G 6 153.536 104.528 144.9 1 69.87 ? CAS Y01 2406 A 1 HETATM 17 C CBF Y01 . . . G 6 152.421 104.486 145.961 1 69.17 ? CBF Y01 2406 A 1 HETATM 18 C CBD Y01 . . . G 6 151.08 104.018 145.367 1 68.25 ? CBD Y01 2406 A 1 HETATM 19 C CAK Y01 . . . G 6 149.965 104.215 146.388 1 72.21 ? CAK Y01 2406 A 1 HETATM 20 C CAI Y01 . . . G 6 150.368 103.802 147.767 1 71.32 ? CAI Y01 2406 A 1 HETATM 21 C CAZ Y01 . . . G 6 151.602 103.497 148.141 1 71.79 ? CAZ Y01 2406 A 1 HETATM 22 C CAV Y01 . . . G 6 151.873 102.967 149.534 1 69.79 ? CAV Y01 2406 A 1 HETATM 23 C CBH Y01 . . . G 6 152.817 103.685 147.237 1 72.87 ? CBH Y01 2406 A 1 HETATM 24 C CAD Y01 . . . G 6 153.371 102.289 146.895 1 71.81 ? CAD Y01 2406 A 1 HETATM 25 C CAT Y01 . . . G 6 153.875 104.487 148.028 1 69.43 ? CAT Y01 2406 A 1 HETATM 26 C CAR Y01 . . . G 6 153.408 104.918 149.42 1 72.63 ? CAR Y01 2406 A 1 HETATM 27 C CBC Y01 . . . G 6 152.967 103.737 150.241 1 72.37 ? CBC Y01 2406 A 1 HETATM 28 O OAW Y01 . . . G 6 154.103 102.835 150.422 1 75.79 ? OAW Y01 2406 A 1 HETATM 29 C CAY Y01 . . . G 6 154.521 102.518 151.653 1 76.43 ? CAY Y01 2406 A 1 HETATM 30 O OAG Y01 . . . G 6 155.678 102.396 151.937 1 75.54 ? OAG Y01 2406 A 1 HETATM 31 C CAM Y01 . . . G 6 153.392 102.235 152.616 1 73.05 ? CAM Y01 2406 A 1 HETATM 32 C CAL Y01 . . . G 6 153.204 103.277 153.702 1 72.44 ? CAL Y01 2406 A 1 HETATM 33 C CAX Y01 . . . G 6 154.098 103.096 154.917 1 81.36 ? CAX Y01 2406 A 1 HETATM 34 O OAH Y01 . . . G 6 153.555 102.975 156.035 1 83.82 ? OAH Y01 2406 A 1 HETATM 35 O OAF Y01 . . . G 6 155.334 103.069 154.745 1 74.95 ? OAF Y01 2406 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #