data_9AYO
#
_model_server_result.job_id            VZAMEPBN6Mu5jH1zDNrRWA 
_model_server_result.datetime_utc      '2025-06-22 05:59:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ayo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":203}' 
#
_entry.id    9AYO 
#
_exptl.entry_id    9AYO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9AYO 
_cell.length_a            51.04 
_cell.length_b            52.51 
_cell.length_c            54.098 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9AYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,N 1 1 
B,G,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C PHE . A PHE 201 1_555 D N ALA . A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 G C PHE . B PHE 201 1_555 H N ALA . B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A O TRP 12 A TRP 32 1_555 F MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
metalc ? metalc2 A OD2 ASP 14 A ASP 34 1_555 F MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc3 A NE2 HIS 45 A HIS 65 1_555 E NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc4 A OE2 GLU 61 A GLU 81 1_555 J NI NI . B NI 204 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc5 A ND1 HIS 68 A HIS 88 1_555 I NI NI . B NI 203 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc6 A OD1 ASP 79 A ASP 99 1_555 K NI NI . B NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc7 C N PHE . A PHE 201 1_555 E NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc8 C O PHE . A PHE 201 1_555 E NI NI . A NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc9 E NI NI . A NI 203 1_555 N O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc10 E NI NI . A NI 203 1_555 N O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc11 E NI NI . A NI 203 1_555 N O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc12 N O HOH . A HOH 301 3_555 J NI NI . B NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc13 N O HOH . A HOH 303 1_555 K NI NI . B NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc14 N O HOH . A HOH 314 1_555 K NI NI . B NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc15 B O TRP 12 B TRP 32 1_555 M MG MG . B MG 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc16 B OD2 ASP 14 B ASP 34 1_555 M MG MG . B MG 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc17 B NE2 HIS 45 B HIS 65 1_555 L NI NI . B NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc18 B OE1 GLU 58 B GLU 78 1_555 I NI NI . B NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc19 B OE1 GLU 61 B GLU 81 1_555 I NI NI . B NI 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc20 B NE2 HIS 68 B HIS 88 1_555 J NI NI . B NI 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc21 B OD1 ASP 79 B ASP 99 1_555 K NI NI . B NI 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc22 G N PHE . B PHE 201 1_555 L NI NI . B NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc23 G O PHE . B PHE 201 1_555 L NI NI . B NI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc24 I NI NI . B NI 203 1_555 O O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc25 I NI NI . B NI 203 1_555 O O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc26 I NI NI . B NI 203 1_555 O O HOH . B HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc27 J NI NI . B NI 204 1_555 O O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc28 K NI NI . B NI 205 1_555 O O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc29 K NI NI . B NI 205 1_555 O O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc30 L NI NI . B NI 206 1_555 O O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc31 L NI NI . B NI 206 1_555 O O HOH . B HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc32 L NI NI . B NI 206 1_555 O O HOH . B HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     9AYO 
_atom_sites.fract_transf_matrix[1][1]    0.019592 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018485 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PHE A 1 201 1 PHE PHE . 
D 3 ALA A 1 202 2 ALA ALA . 
E 4 NI A 1 203 7 NI NI . 
F 5 MG A 1 204 1 MG MG . 
G 2 PHE B 1 201 1 PHE PHE . 
H 3 ALA B 1 202 2 ALA ALA . 
I 4 NI B 1 203 1 NI NI . 
J 4 NI B 1 204 3 NI NI . 
K 4 NI B 1 205 4 NI NI . 
L 4 NI B 1 206 6 NI NI . 
M 5 MG B 1 207 2 MG MG . 
N 6 HOH A 1 301 20 HOH HOH . 
N 6 HOH A 2 302 169 HOH HOH . 
N 6 HOH A 3 303 157 HOH HOH . 
N 6 HOH A 4 304 153 HOH HOH . 
N 6 HOH A 5 305 179 HOH HOH . 
N 6 HOH A 6 306 186 HOH HOH . 
N 6 HOH A 7 307 180 HOH HOH . 
N 6 HOH A 8 308 122 HOH HOH . 
N 6 HOH A 9 309 150 HOH HOH . 
N 6 HOH A 10 310 175 HOH HOH . 
N 6 HOH A 11 311 29 HOH HOH . 
N 6 HOH A 12 312 8 HOH HOH . 
N 6 HOH A 13 313 144 HOH HOH . 
N 6 HOH A 14 314 156 HOH HOH . 
N 6 HOH A 15 315 187 HOH HOH . 
N 6 HOH A 16 316 24 HOH HOH . 
N 6 HOH A 17 317 172 HOH HOH . 
N 6 HOH A 18 318 159 HOH HOH . 
N 6 HOH A 19 319 110 HOH HOH . 
N 6 HOH A 20 320 6 HOH HOH . 
N 6 HOH A 21 321 54 HOH HOH . 
N 6 HOH A 22 322 141 HOH HOH . 
N 6 HOH A 23 323 48 HOH HOH . 
N 6 HOH A 24 324 39 HOH HOH . 
N 6 HOH A 25 325 89 HOH HOH . 
N 6 HOH A 26 326 28 HOH HOH . 
N 6 HOH A 27 327 16 HOH HOH . 
N 6 HOH A 28 328 30 HOH HOH . 
N 6 HOH A 29 329 4 HOH HOH . 
N 6 HOH A 30 330 21 HOH HOH . 
N 6 HOH A 31 331 40 HOH HOH . 
N 6 HOH A 32 332 47 HOH HOH . 
N 6 HOH A 33 333 2 HOH HOH . 
N 6 HOH A 34 334 161 HOH HOH . 
N 6 HOH A 35 335 177 HOH HOH . 
N 6 HOH A 36 336 19 HOH HOH . 
N 6 HOH A 37 337 41 HOH HOH . 
N 6 HOH A 38 338 3 HOH HOH . 
N 6 HOH A 39 339 103 HOH HOH . 
N 6 HOH A 40 340 64 HOH HOH . 
N 6 HOH A 41 341 12 HOH HOH . 
N 6 HOH A 42 342 5 HOH HOH . 
N 6 HOH A 43 343 7 HOH HOH . 
N 6 HOH A 44 344 143 HOH HOH . 
N 6 HOH A 45 345 90 HOH HOH . 
N 6 HOH A 46 346 49 HOH HOH . 
N 6 HOH A 47 347 71 HOH HOH . 
N 6 HOH A 48 348 81 HOH HOH . 
N 6 HOH A 49 349 168 HOH HOH . 
N 6 HOH A 50 350 151 HOH HOH . 
N 6 HOH A 51 351 62 HOH HOH . 
N 6 HOH A 52 352 57 HOH HOH . 
N 6 HOH A 53 353 1 HOH HOH . 
N 6 HOH A 54 354 82 HOH HOH . 
N 6 HOH A 55 355 68 HOH HOH . 
N 6 HOH A 56 356 185 HOH HOH . 
N 6 HOH A 57 357 132 HOH HOH . 
N 6 HOH A 58 358 79 HOH HOH . 
N 6 HOH A 59 359 154 HOH HOH . 
N 6 HOH A 60 360 190 HOH HOH . 
N 6 HOH A 61 361 152 HOH HOH . 
N 6 HOH A 62 362 116 HOH HOH . 
N 6 HOH A 63 363 137 HOH HOH . 
N 6 HOH A 64 364 146 HOH HOH . 
N 6 HOH A 65 365 91 HOH HOH . 
N 6 HOH A 66 366 155 HOH HOH . 
N 6 HOH A 67 367 75 HOH HOH . 
N 6 HOH A 68 368 119 HOH HOH . 
N 6 HOH A 69 369 104 HOH HOH . 
N 6 HOH A 70 370 142 HOH HOH . 
N 6 HOH A 71 371 96 HOH HOH . 
N 6 HOH A 72 372 128 HOH HOH . 
N 6 HOH A 73 373 115 HOH HOH . 
N 6 HOH A 74 374 65 HOH HOH . 
N 6 HOH A 75 375 120 HOH HOH . 
N 6 HOH A 76 376 58 HOH HOH . 
N 6 HOH A 77 377 129 HOH HOH . 
N 6 HOH A 78 378 44 HOH HOH . 
N 6 HOH A 79 379 174 HOH HOH . 
N 6 HOH A 80 380 170 HOH HOH . 
O 6 HOH B 1 301 160 HOH HOH . 
O 6 HOH B 2 302 166 HOH HOH . 
O 6 HOH B 3 303 11 HOH HOH . 
O 6 HOH B 4 304 184 HOH HOH . 
O 6 HOH B 5 305 9 HOH HOH . 
O 6 HOH B 6 306 158 HOH HOH . 
O 6 HOH B 7 307 78 HOH HOH . 
O 6 HOH B 8 308 25 HOH HOH . 
O 6 HOH B 9 309 162 HOH HOH . 
O 6 HOH B 10 310 107 HOH HOH . 
O 6 HOH B 11 311 15 HOH HOH . 
O 6 HOH B 12 312 61 HOH HOH . 
O 6 HOH B 13 313 80 HOH HOH . 
O 6 HOH B 14 314 66 HOH HOH . 
O 6 HOH B 15 315 77 HOH HOH . 
O 6 HOH B 16 316 95 HOH HOH . 
O 6 HOH B 17 317 35 HOH HOH . 
O 6 HOH B 18 318 13 HOH HOH . 
O 6 HOH B 19 319 181 HOH HOH . 
O 6 HOH B 20 320 165 HOH HOH . 
O 6 HOH B 21 321 88 HOH HOH . 
O 6 HOH B 22 322 135 HOH HOH . 
O 6 HOH B 23 323 92 HOH HOH . 
O 6 HOH B 24 324 70 HOH HOH . 
O 6 HOH B 25 325 37 HOH HOH . 
O 6 HOH B 26 326 176 HOH HOH . 
O 6 HOH B 27 327 191 HOH HOH . 
O 6 HOH B 28 328 147 HOH HOH . 
O 6 HOH B 29 329 67 HOH HOH . 
O 6 HOH B 30 330 98 HOH HOH . 
O 6 HOH B 31 331 26 HOH HOH . 
O 6 HOH B 32 332 164 HOH HOH . 
O 6 HOH B 33 333 22 HOH HOH . 
O 6 HOH B 34 334 106 HOH HOH . 
O 6 HOH B 35 335 86 HOH HOH . 
O 6 HOH B 36 336 27 HOH HOH . 
O 6 HOH B 37 337 38 HOH HOH . 
O 6 HOH B 38 338 14 HOH HOH . 
O 6 HOH B 39 339 124 HOH HOH . 
O 6 HOH B 40 340 18 HOH HOH . 
O 6 HOH B 41 341 149 HOH HOH . 
O 6 HOH B 42 342 34 HOH HOH . 
O 6 HOH B 43 343 87 HOH HOH . 
O 6 HOH B 44 344 10 HOH HOH . 
O 6 HOH B 45 345 133 HOH HOH . 
O 6 HOH B 46 346 33 HOH HOH . 
O 6 HOH B 47 347 73 HOH HOH . 
O 6 HOH B 48 348 118 HOH HOH . 
O 6 HOH B 49 349 83 HOH HOH . 
O 6 HOH B 50 350 31 HOH HOH . 
O 6 HOH B 51 351 36 HOH HOH . 
O 6 HOH B 52 352 69 HOH HOH . 
O 6 HOH B 53 353 109 HOH HOH . 
O 6 HOH B 54 354 76 HOH HOH . 
O 6 HOH B 55 355 85 HOH HOH . 
O 6 HOH B 56 356 51 HOH HOH . 
O 6 HOH B 57 357 117 HOH HOH . 
O 6 HOH B 58 358 72 HOH HOH . 
O 6 HOH B 59 359 163 HOH HOH . 
O 6 HOH B 60 360 59 HOH HOH . 
O 6 HOH B 61 361 50 HOH HOH . 
O 6 HOH B 62 362 55 HOH HOH . 
O 6 HOH B 63 363 93 HOH HOH . 
O 6 HOH B 64 364 123 HOH HOH . 
O 6 HOH B 65 365 136 HOH HOH . 
O 6 HOH B 66 366 140 HOH HOH . 
O 6 HOH B 67 367 105 HOH HOH . 
O 6 HOH B 68 368 167 HOH HOH . 
O 6 HOH B 69 369 94 HOH HOH . 
O 6 HOH B 70 370 46 HOH HOH . 
O 6 HOH B 71 371 56 HOH HOH . 
O 6 HOH B 72 372 182 HOH HOH . 
O 6 HOH B 73 373 171 HOH HOH . 
O 6 HOH B 74 374 131 HOH HOH . 
O 6 HOH B 75 375 173 HOH HOH . 
O 6 HOH B 76 376 125 HOH HOH . 
O 6 HOH B 77 377 111 HOH HOH . 
O 6 HOH B 78 378 188 HOH HOH . 
O 6 HOH B 79 379 53 HOH HOH . 
O 6 HOH B 80 380 52 HOH HOH . 
O 6 HOH B 81 381 84 HOH HOH . 
O 6 HOH B 82 382 112 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -13.27 
_atom_site.Cartn_y               0.807 
_atom_site.Cartn_z               4.283 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        16.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#