data_9AZP # _model_server_result.job_id bIJFmqldHAvqYUowvrk70A _model_server_result.datetime_utc '2024-12-02 03:01:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9azp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1001}' # _entry.id 9AZP # _exptl.entry_id 9AZP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9AZP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9AZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id W _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 68 A GLU 72 1_555 A N HIC 69 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C HIC 69 A HIC 73 1_555 A N GLY 70 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C GLU 68 B GLU 72 1_555 B N HIC 69 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 B C HIC 69 B HIC 73 1_555 B N GLY 70 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C GLU 68 C GLU 72 1_555 C N HIC 69 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 C C HIC 69 C HIC 73 1_555 C N GLY 70 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C GLU 68 D GLU 72 1_555 D N HIC 69 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 D C HIC 69 D HIC 73 1_555 D N GLY 70 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 E C GLU 68 E GLU 72 1_555 E N HIC 69 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 E C HIC 69 E HIC 73 1_555 E N GLY 70 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 F C GLU 68 F GLU 72 1_555 F N HIC 69 F HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 F C HIC 69 F HIC 73 1_555 F N GLY 70 F GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 I C GLU 68 I GLU 72 1_555 I N HIC 69 I HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 I C HIC 69 I HIC 73 1_555 I N GLY 70 I GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 K O1B ADP . A ADP 401 1_555 L MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 K O3B ADP . A ADP 401 1_555 L MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc3 K O1A ADP . A ADP 401 1_555 L MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 K O3A ADP . A ADP 401 1_555 L MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc5 M O1B ADP . B ADP 401 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 M O3B ADP . B ADP 401 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 M O1A ADP . B ADP 401 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc8 M O3A ADP . B ADP 401 1_555 N MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc9 O O1B ADP . C ADP 401 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 O O3B ADP . C ADP 401 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc11 O O3A ADP . C ADP 401 1_555 P MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc12 Q O1B ADP . D ADP 401 1_555 R MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc13 Q O3B ADP . D ADP 401 1_555 R MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc14 Q O1A ADP . D ADP 401 1_555 R MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc15 Q O3A ADP . D ADP 401 1_555 R MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc16 S O1B ADP . E ADP 401 1_555 T MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 S O3B ADP . E ADP 401 1_555 T MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc18 U O1B ADP . F ADP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc19 U O1A ADP . F ADP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc20 U O3A ADP . F ADP 401 1_555 V MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc21 I OD1 ASP 7 I ASP 11 1_555 X MG MG . I MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc22 I OD2 ASP 7 I ASP 11 1_555 X MG MG . I MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc23 W O2B ATP . I ATP 1001 1_555 X MG MG . I MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 9AZP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 4 ADP A 1 401 401 ADP ADP . L 5 MG A 1 402 402 MG MG . M 4 ADP B 1 401 401 ADP ADP . N 5 MG B 1 402 402 MG MG . O 4 ADP C 1 401 401 ADP ADP . P 5 MG C 1 402 402 MG MG . Q 4 ADP D 1 401 401 ADP ADP . R 5 MG D 1 402 402 MG MG . S 4 ADP E 1 401 401 ADP ADP . T 5 MG E 1 402 402 MG MG . U 4 ADP F 1 401 401 ADP ADP . V 5 MG F 1 402 402 MG MG . W 6 ATP I 1 1001 1001 ATP ATP . X 5 MG I 1 1002 1002 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . W 6 165.527 144.276 64.568 1 268.6 ? PG ATP 1001 I 1 HETATM 2 O O1G ATP . . . W 6 165.051 145.595 64.06 1 268.6 ? O1G ATP 1001 I 1 HETATM 3 O O2G ATP . . . W 6 165.487 143.159 63.52 1 268.6 ? O2G ATP 1001 I 1 HETATM 4 O O3G ATP . . . W 6 166.925 144.327 65.193 1 268.6 ? O3G ATP 1001 I 1 HETATM 5 P PB ATP . . . W 6 164.413 142.493 66.701 1 268.6 ? PB ATP 1001 I 1 HETATM 6 O O1B ATP . . . W 6 164.644 142.837 68.118 1 268.6 ? O1B ATP 1001 I 1 HETATM 7 O O2B ATP . . . W 6 165.248 141.363 66.1 1 268.6 ? O2B ATP 1001 I 1 HETATM 8 O O3B ATP . . . W 6 164.581 143.753 65.748 1 268.6 ? O3B ATP 1001 I 1 HETATM 9 P PA ATP . . . W 6 162.099 140.777 66.109 1 268.6 ? PA ATP 1001 I 1 HETATM 10 O O1A ATP . . . W 6 162.497 139.656 66.982 1 268.6 ? O1A ATP 1001 I 1 HETATM 11 O O2A ATP . . . W 6 162.285 140.535 64.618 1 268.6 ? O2A ATP 1001 I 1 HETATM 12 O O3A ATP . . . W 6 162.894 142.093 66.459 1 268.6 ? O3A ATP 1001 I 1 HETATM 13 O O5' ATP . . . W 6 160.608 141.203 66.391 1 268.6 ? O5' ATP 1001 I 1 HETATM 14 C C5' ATP . . . W 6 160.1 141.283 67.738 1 268.6 ? C5' ATP 1001 I 1 HETATM 15 C C4' ATP . . . W 6 159.232 142.508 67.851 1 268.6 ? C4' ATP 1001 I 1 HETATM 16 O O4' ATP . . . W 6 157.871 142.153 67.536 1 268.6 ? O4' ATP 1001 I 1 HETATM 17 C C3' ATP . . . W 6 159.156 143.105 69.249 1 268.6 ? C3' ATP 1001 I 1 HETATM 18 O O3' ATP . . . W 6 158.764 144.471 69.199 1 268.6 ? O3' ATP 1001 I 1 HETATM 19 C C2' ATP . . . W 6 158.08 142.243 69.907 1 268.6 ? C2' ATP 1001 I 1 HETATM 20 O O2' ATP . . . W 6 157.394 142.943 70.938 1 268.6 ? O2' ATP 1001 I 1 HETATM 21 C C1' ATP . . . W 6 157.127 141.996 68.734 1 268.6 ? C1' ATP 1001 I 1 HETATM 22 N N9 ATP . . . W 6 156.526 140.672 68.73 1 268.6 ? N9 ATP 1001 I 1 HETATM 23 C C8 ATP . . . W 6 157.061 139.511 69.224 1 268.6 ? C8 ATP 1001 I 1 HETATM 24 N N7 ATP . . . W 6 156.288 138.462 69.079 1 268.6 ? N7 ATP 1001 I 1 HETATM 25 C C5 ATP . . . W 6 155.167 138.969 68.44 1 268.6 ? C5 ATP 1001 I 1 HETATM 26 C C6 ATP . . . W 6 153.969 138.373 68 1 268.6 ? C6 ATP 1001 I 1 HETATM 27 N N6 ATP . . . W 6 153.684 137.076 68.153 1 268.6 ? N6 ATP 1001 I 1 HETATM 28 N N1 ATP . . . W 6 153.044 139.171 67.411 1 268.6 ? N1 ATP 1001 I 1 HETATM 29 C C2 ATP . . . W 6 153.315 140.471 67.26 1 268.6 ? C2 ATP 1001 I 1 HETATM 30 N N3 ATP . . . W 6 154.406 141.141 67.637 1 268.6 ? N3 ATP 1001 I 1 HETATM 31 C C4 ATP . . . W 6 155.295 140.333 68.229 1 268.6 ? C4 ATP 1001 I 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #