data_9B0E # _model_server_result.job_id GrgsQ9ATi3QfITRhmJTeyA _model_server_result.datetime_utc '2024-10-12 03:14:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 9B0E # _exptl.entry_id 9B0E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B0E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 122 n n PB O2B ADP sing 123 n n PB O3B ADP sing 124 n n PB O3A ADP sing 125 n n O2B HOB2 ADP sing 126 n n O3B HOB3 ADP sing 127 n n PA O1A ADP doub 128 n n PA O2A ADP sing 129 n n PA O3A ADP sing 130 n n PA O5' ADP sing 131 n n O2A HOA2 ADP sing 132 n n O5' C5' ADP sing 133 n n C5' C4' ADP sing 134 n n C5' "H5'1" ADP sing 135 n n C5' "H5'2" ADP sing 136 n n C4' O4' ADP sing 137 n n C4' C3' ADP sing 138 n n C4' H4' ADP sing 139 n n O4' C1' ADP sing 140 n n C3' O3' ADP sing 141 n n C3' C2' ADP sing 142 n n C3' H3' ADP sing 143 n n O3' HO3' ADP sing 144 n n C2' O2' ADP sing 145 n n C2' C1' ADP sing 146 n n C2' H2' ADP sing 147 n n O2' HO2' ADP sing 148 n n C1' N9 ADP sing 149 n n C1' H1' ADP sing 150 n n N9 C8 ADP sing 151 n y N9 C4 ADP sing 152 n y C8 N7 ADP doub 153 n y C8 H8 ADP sing 154 n n N7 C5 ADP sing 155 n y C5 C6 ADP sing 156 n y C5 C4 ADP doub 157 n y C6 N6 ADP sing 158 n n C6 N1 ADP doub 159 n y N6 HN61 ADP sing 160 n n N6 HN62 ADP sing 161 n n N1 C2 ADP sing 162 n y C2 N3 ADP doub 163 n y C2 H2 ADP sing 164 n n N3 C4 ADP sing 165 n y # _atom_sites.entry_id 9B0E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 1101 1001 ADP ADP . D 3 A1AH4 A 1 1102 1002 A1AH4 LIG . E 2 ADP B 1 1101 1001 ADP ADP . F 3 A1AH4 B 1 1102 1002 A1AH4 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 123.643 138.396 131.7 1 91.92 ? PB ADP 1101 A 1 HETATM 2 O O1B ADP . . . C 2 123.717 139.258 130.464 1 97.1 ? O1B ADP 1101 A 1 HETATM 3 O O2B ADP . . . C 2 124.688 138.703 132.746 1 89.37 ? O2B ADP 1101 A 1 HETATM 4 O O3B ADP . . . C 2 122.243 138.225 132.234 1 98.12 ? O3B ADP 1101 A 1 HETATM 5 P PA ADP . . . C 2 123.578 136.492 129.689 1 98.08 ? PA ADP 1101 A 1 HETATM 6 O O1A ADP . . . C 2 124.557 137.099 128.715 1 94.45 ? O1A ADP 1101 A 1 HETATM 7 O O2A ADP . . . C 2 122.102 136.768 129.552 1 97.38 ? O2A ADP 1101 A 1 HETATM 8 O O3A ADP . . . C 2 124.031 136.932 131.166 1 95.17 ? O3A ADP 1101 A 1 HETATM 9 O O5' ADP . . . C 2 123.793 134.901 129.707 1 96.74 ? O5' ADP 1101 A 1 HETATM 10 C C5' ADP . . . C 2 124.533 134.276 128.665 1 96.27 ? C5' ADP 1101 A 1 HETATM 11 C C4' ADP . . . C 2 123.704 133.159 128.05 1 95.87 ? C4' ADP 1101 A 1 HETATM 12 O O4' ADP . . . C 2 122.753 133.741 127.159 1 81.06 ? O4' ADP 1101 A 1 HETATM 13 C C3' ADP . . . C 2 124.576 132.211 127.248 1 98.13 ? C3' ADP 1101 A 1 HETATM 14 O O3' ADP . . . C 2 124.529 130.899 127.813 1 100.06 ? O3' ADP 1101 A 1 HETATM 15 C C2' ADP . . . C 2 123.996 132.19 125.852 1 96.44 ? C2' ADP 1101 A 1 HETATM 16 O O2' ADP . . . C 2 123.479 130.889 125.562 1 94.79 ? O2' ADP 1101 A 1 HETATM 17 C C1' ADP . . . C 2 122.863 133.2 125.842 1 92.33 ? C1' ADP 1101 A 1 HETATM 18 N N9 ADP . . . C 2 123.199 134.309 124.915 1 98.6 ? N9 ADP 1101 A 1 HETATM 19 C C8 ADP . . . C 2 123.208 135.614 125.242 1 95.72 ? C8 ADP 1101 A 1 HETATM 20 N N7 ADP . . . C 2 123.547 136.385 124.179 1 95.23 ? N7 ADP 1101 A 1 HETATM 21 C C5 ADP . . . C 2 123.762 135.563 123.139 1 92.15 ? C5 ADP 1101 A 1 HETATM 22 C C6 ADP . . . C 2 124.15 135.723 121.721 1 89.87 ? C6 ADP 1101 A 1 HETATM 23 N N6 ADP . . . C 2 124.383 136.95 121.197 1 91.93 ? N6 ADP 1101 A 1 HETATM 24 N N1 ADP . . . C 2 124.265 134.607 120.969 1 92.61 ? N1 ADP 1101 A 1 HETATM 25 C C2 ADP . . . C 2 124.038 133.384 121.481 1 93.52 ? C2 ADP 1101 A 1 HETATM 26 N N3 ADP . . . C 2 123.68 133.166 122.758 1 95.61 ? N3 ADP 1101 A 1 HETATM 27 C C4 ADP . . . C 2 123.527 134.195 123.625 1 97.18 ? C4 ADP 1101 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 27 #