data_9B0I # _model_server_result.job_id cEm16iKU0WUNAnLZFSnkjw _model_server_result.datetime_utc '2024-10-12 01:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 9B0I # _exptl.entry_id 9B0I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B0I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 305 A SER 292 1_555 D MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc2 C O1B ADP . A ADP 1101 1_555 D MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc3 B OG SER 305 B SER 292 1_555 G MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 F O1B ADP . B ADP 1101 1_555 G MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 122 n n PB O2B ADP sing 123 n n PB O3B ADP sing 124 n n PB O3A ADP sing 125 n n O2B HOB2 ADP sing 126 n n O3B HOB3 ADP sing 127 n n PA O1A ADP doub 128 n n PA O2A ADP sing 129 n n PA O3A ADP sing 130 n n PA O5' ADP sing 131 n n O2A HOA2 ADP sing 132 n n O5' C5' ADP sing 133 n n C5' C4' ADP sing 134 n n C5' "H5'1" ADP sing 135 n n C5' "H5'2" ADP sing 136 n n C4' O4' ADP sing 137 n n C4' C3' ADP sing 138 n n C4' H4' ADP sing 139 n n O4' C1' ADP sing 140 n n C3' O3' ADP sing 141 n n C3' C2' ADP sing 142 n n C3' H3' ADP sing 143 n n O3' HO3' ADP sing 144 n n C2' O2' ADP sing 145 n n C2' C1' ADP sing 146 n n C2' H2' ADP sing 147 n n O2' HO2' ADP sing 148 n n C1' N9 ADP sing 149 n n C1' H1' ADP sing 150 n n N9 C8 ADP sing 151 n y N9 C4 ADP sing 152 n y C8 N7 ADP doub 153 n y C8 H8 ADP sing 154 n n N7 C5 ADP sing 155 n y C5 C6 ADP sing 156 n y C5 C4 ADP doub 157 n y C6 N6 ADP sing 158 n n C6 N1 ADP doub 159 n y N6 HN61 ADP sing 160 n n N6 HN62 ADP sing 161 n n N1 C2 ADP sing 162 n y C2 N3 ADP doub 163 n y C2 H2 ADP sing 164 n n N3 C4 ADP sing 165 n y # _atom_sites.entry_id 9B0I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 1101 1001 ADP ADP . D 3 MG A 1 1102 1002 MG MG . E 4 A1AH4 A 1 1103 1003 A1AH4 LIG . F 2 ADP B 1 1101 1001 ADP ADP . G 3 MG B 1 1102 1002 MG MG . H 4 A1AH4 B 1 1103 1003 A1AH4 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 153.218 125.859 166.559 1 25.97 ? PB ADP 1101 A 1 HETATM 2 O O1B ADP . . . C 2 153.11 125.978 165.061 1 30.03 ? O1B ADP 1101 A 1 HETATM 3 O O2B ADP . . . C 2 154.164 124.791 167.038 1 9.44 ? O2B ADP 1101 A 1 HETATM 4 O O3B ADP . . . C 2 153.37 127.174 167.276 1 36.08 ? O3B ADP 1101 A 1 HETATM 5 P PA ADP . . . C 2 151.12 125.862 168.401 1 31.06 ? PA ADP 1101 A 1 HETATM 6 O O1A ADP . . . C 2 150.407 127.171 168.182 1 31.02 ? O1A ADP 1101 A 1 HETATM 7 O O2A ADP . . . C 2 152.179 125.791 169.46 1 25.04 ? O2A ADP 1101 A 1 HETATM 8 O O3A ADP . . . C 2 151.765 125.349 167.02 1 32.48 ? O3A ADP 1101 A 1 HETATM 9 O O5' ADP . . . C 2 150.035 124.741 168.766 1 22.08 ? O5' ADP 1101 A 1 HETATM 10 C C5' ADP . . . C 2 150.045 124.222 170.088 1 19.8 ? C5' ADP 1101 A 1 HETATM 11 C C4' ADP . . . C 2 148.651 123.789 170.507 1 21.13 ? C4' ADP 1101 A 1 HETATM 12 O O4' ADP . . . C 2 148.733 123.287 171.839 1 31.6 ? O4' ADP 1101 A 1 HETATM 13 C C3' ADP . . . C 2 147.689 124.961 170.509 1 20.33 ? C3' ADP 1101 A 1 HETATM 14 O O3' ADP . . . C 2 146.543 124.644 169.72 1 25.42 ? O3' ADP 1101 A 1 HETATM 15 C C2' ADP . . . C 2 147.265 125.157 171.947 1 28.2 ? C2' ADP 1101 A 1 HETATM 16 O O2' ADP . . . C 2 145.849 124.996 172.05 1 29.59 ? O2' ADP 1101 A 1 HETATM 17 C C1' ADP . . . C 2 147.964 124.073 172.747 1 28.74 ? C1' ADP 1101 A 1 HETATM 18 N N9 ADP . . . C 2 148.891 124.687 173.729 1 28.1 ? N9 ADP 1101 A 1 HETATM 19 C C8 ADP . . . C 2 150.146 125.095 173.47 1 27.85 ? C8 ADP 1101 A 1 HETATM 20 N N7 ADP . . . C 2 150.737 125.608 174.577 1 21.13 ? N7 ADP 1101 A 1 HETATM 21 C C5 ADP . . . C 2 149.843 125.53 175.576 1 16.72 ? C5 ADP 1101 A 1 HETATM 22 C C6 ADP . . . C 2 149.816 125.893 177.007 1 15.69 ? C6 ADP 1101 A 1 HETATM 23 N N6 ADP . . . C 2 150.89 126.457 177.603 1 23.07 ? N6 ADP 1101 A 1 HETATM 24 N N1 ADP . . . C 2 148.685 125.645 177.698 1 23.22 ? N1 ADP 1101 A 1 HETATM 25 C C2 ADP . . . C 2 147.61 125.085 177.116 1 30.23 ? C2 ADP 1101 A 1 HETATM 26 N N3 ADP . . . C 2 147.564 124.729 175.822 1 28.54 ? N3 ADP 1101 A 1 HETATM 27 C C4 ADP . . . C 2 148.63 124.923 175.014 1 24.48 ? C4 ADP 1101 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #