data_9B0I
#
_model_server_result.job_id            qbK1cGSu-LHQrIlGGjULkA 
_model_server_result.datetime_utc      '2024-10-12 01:29:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b0i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1101}' 
#
_entry.id    9B0I 
#
_exptl.entry_id    9B0I 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B0I 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B0I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 305 A SER 292 1_555 D MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc2 C O1B ADP . A ADP 1101 1_555 D MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc3 B OG SER 305 B SER 292 1_555 G MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc4 F O1B ADP . B ADP 1101 1_555 G MG MG . B MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 122 n n 
PB O2B ADP sing 123 n n 
PB O3B ADP sing 124 n n 
PB O3A ADP sing 125 n n 
O2B HOB2 ADP sing 126 n n 
O3B HOB3 ADP sing 127 n n 
PA O1A ADP doub 128 n n 
PA O2A ADP sing 129 n n 
PA O3A ADP sing 130 n n 
PA O5' ADP sing 131 n n 
O2A HOA2 ADP sing 132 n n 
O5' C5' ADP sing 133 n n 
C5' C4' ADP sing 134 n n 
C5' "H5'1" ADP sing 135 n n 
C5' "H5'2" ADP sing 136 n n 
C4' O4' ADP sing 137 n n 
C4' C3' ADP sing 138 n n 
C4' H4' ADP sing 139 n n 
O4' C1' ADP sing 140 n n 
C3' O3' ADP sing 141 n n 
C3' C2' ADP sing 142 n n 
C3' H3' ADP sing 143 n n 
O3' HO3' ADP sing 144 n n 
C2' O2' ADP sing 145 n n 
C2' C1' ADP sing 146 n n 
C2' H2' ADP sing 147 n n 
O2' HO2' ADP sing 148 n n 
C1' N9 ADP sing 149 n n 
C1' H1' ADP sing 150 n n 
N9 C8 ADP sing 151 n y 
N9 C4 ADP sing 152 n y 
C8 N7 ADP doub 153 n y 
C8 H8 ADP sing 154 n n 
N7 C5 ADP sing 155 n y 
C5 C6 ADP sing 156 n y 
C5 C4 ADP doub 157 n y 
C6 N6 ADP sing 158 n n 
C6 N1 ADP doub 159 n y 
N6 HN61 ADP sing 160 n n 
N6 HN62 ADP sing 161 n n 
N1 C2 ADP sing 162 n y 
C2 N3 ADP doub 163 n y 
C2 H2 ADP sing 164 n n 
N3 C4 ADP sing 165 n y 
#
_atom_sites.entry_id                     9B0I 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 1101 1001 ADP ADP . 
D 3 MG A 1 1102 1002 MG MG . 
E 4 A1AH4 A 1 1103 1003 A1AH4 LIG . 
F 2 ADP B 1 1101 1001 ADP ADP . 
G 3 MG B 1 1102 1002 MG MG . 
H 4 A1AH4 B 1 1103 1003 A1AH4 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . F 2 156.381 183.74 166.56 1 24.45 ? PB ADP 1101 B 1 
HETATM 2 O O1B ADP . . . F 2 156.49 183.626 165.061 1 29.69 ? O1B ADP 1101 B 1 
HETATM 3 O O2B ADP . . . F 2 155.431 184.804 167.042 1 9.68 ? O2B ADP 1101 B 1 
HETATM 4 O O3B ADP . . . F 2 156.234 182.423 167.274 1 35.9 ? O3B ADP 1101 B 1 
HETATM 5 P PA ADP . . . F 2 158.479 183.738 168.401 1 31.78 ? PA ADP 1101 B 1 
HETATM 6 O O1A ADP . . . F 2 159.194 182.431 168.178 1 31.74 ? O1A ADP 1101 B 1 
HETATM 7 O O2A ADP . . . F 2 157.422 183.805 169.462 1 25.3 ? O2A ADP 1101 B 1 
HETATM 8 O O3A ADP . . . F 2 157.832 184.254 167.023 1 32.2 ? O3A ADP 1101 B 1 
HETATM 9 O O5' ADP . . . F 2 159.563 184.86 168.768 1 21.75 ? O5' ADP 1101 B 1 
HETATM 10 C C5' ADP . . . F 2 159.554 185.377 170.091 1 19.55 ? C5' ADP 1101 B 1 
HETATM 11 C C4' ADP . . . F 2 160.948 185.811 170.509 1 21.29 ? C4' ADP 1101 B 1 
HETATM 12 O O4' ADP . . . F 2 160.867 186.313 171.84 1 32.06 ? O4' ADP 1101 B 1 
HETATM 13 C C3' ADP . . . F 2 161.911 184.64 170.511 1 20.06 ? C3' ADP 1101 B 1 
HETATM 14 O O3' ADP . . . F 2 163.058 184.958 169.722 1 25.57 ? O3' ADP 1101 B 1 
HETATM 15 C C2' ADP . . . F 2 162.334 184.443 171.949 1 27.79 ? C2' ADP 1101 B 1 
HETATM 16 O O2' ADP . . . F 2 163.751 184.604 172.052 1 29.4 ? O2' ADP 1101 B 1 
HETATM 17 C C1' ADP . . . F 2 161.636 185.526 172.748 1 28.78 ? C1' ADP 1101 B 1 
HETATM 18 N N9 ADP . . . F 2 160.708 184.912 173.73 1 28.34 ? N9 ADP 1101 B 1 
HETATM 19 C C8 ADP . . . F 2 159.453 184.504 173.471 1 27.93 ? C8 ADP 1101 B 1 
HETATM 20 N N7 ADP . . . F 2 158.862 183.991 174.577 1 21.42 ? N7 ADP 1101 B 1 
HETATM 21 C C5 ADP . . . F 2 159.755 184.07 175.577 1 17.09 ? C5 ADP 1101 B 1 
HETATM 22 C C6 ADP . . . F 2 159.782 183.706 177.008 1 16.1 ? C6 ADP 1101 B 1 
HETATM 23 N N6 ADP . . . F 2 158.708 183.142 177.604 1 23.05 ? N6 ADP 1101 B 1 
HETATM 24 N N1 ADP . . . F 2 160.913 183.954 177.699 1 23.26 ? N1 ADP 1101 B 1 
HETATM 25 C C2 ADP . . . F 2 161.988 184.514 177.118 1 30.25 ? C2 ADP 1101 B 1 
HETATM 26 N N3 ADP . . . F 2 162.035 184.871 175.824 1 29.18 ? N3 ADP 1101 B 1 
HETATM 27 C C4 ADP . . . F 2 160.968 184.677 175.015 1 24.89 ? C4 ADP 1101 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#