data_9B0T # _model_server_result.job_id d8gSradLmqAxp4JtV8rkuQ _model_server_result.datetime_utc '2025-02-23 03:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":401}' # _entry.id 9B0T # _exptl.entry_id 9B0T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 131.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B0T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 M N N ? 2 Q N N ? 2 U N N ? 2 Y N N ? 2 CA N N ? 2 GA N N ? 2 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J O1B ADP . A ADP 402 1_555 L MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc2 J O2B ADP . A ADP 402 1_555 L MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc3 J O1A ADP . A ADP 402 1_555 L MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc4 N O1B ADP . B ADP 402 1_555 P MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 N O2B ADP . B ADP 402 1_555 P MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc6 N O1A ADP . B ADP 402 1_555 P MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc7 R O1B ADP . C ADP 402 1_555 T MG MG . C MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 R O2B ADP . C ADP 402 1_555 T MG MG . C MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 R O1A ADP . C ADP 402 1_555 T MG MG . C MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc10 V O2B ADP . D ADP 402 1_555 X MG MG . D MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc11 V O3B ADP . D ADP 402 1_555 X MG MG . D MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc12 V O2A ADP . D ADP 402 1_555 X MG MG . D MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc13 Z O2B ADP . E ADP 402 1_555 BA MG MG . E MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc14 Z O3B ADP . E ADP 402 1_555 BA MG MG . E MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc15 Z O2A ADP . E ADP 402 1_555 BA MG MG . E MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc16 DA O2B ADP . F ADP 402 1_555 FA MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc17 DA O3B ADP . F ADP 402 1_555 FA MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc18 DA O2A ADP . F ADP 402 1_555 FA MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc19 HA O2B ADP . G ADP 402 1_555 JA MG MG . G MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc20 HA O3B ADP . G ADP 402 1_555 JA MG MG . G MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc21 HA O2A ADP . G ADP 402 1_555 JA MG MG . G MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc22 LA O1B ADP . H ADP 402 1_555 NA MG MG . H MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc23 LA O2B ADP . H ADP 402 1_555 NA MG MG . H MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc24 LA O1A ADP . H ADP 402 1_555 NA MG MG . H MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? # _chem_comp.formula 'C4 H9 N3 O2' _chem_comp.formula_weight 131.133 _chem_comp.id CRN _chem_comp.mon_nstd_flag . _chem_comp.name N-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CREATINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C7 CRN sing 114 n n O9 HO9 CRN sing 115 n n C7 O8 CRN doub 116 n n C7 C5 CRN sing 117 n n C5 N1 CRN sing 118 n n C5 H51 CRN sing 119 n n C5 H52 CRN sing 120 n n N1 C4 CRN sing 121 n n N1 C2 CRN sing 122 n n C4 H41 CRN sing 123 n n C4 H42 CRN sing 124 n n C4 H43 CRN sing 125 n n C2 N6 CRN doub 126 n n C2 N3 CRN sing 127 n n N6 HN6 CRN sing 128 n n N3 HN31 CRN sing 129 n n N3 HN32 CRN sing 130 n n # _atom_sites.entry_id 9B0T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 CRN A 1 401 401 CRN CRN . J 3 ADP A 1 402 402 ADP ADP . K 4 NO3 A 1 403 403 NO3 NO3 . L 5 MG A 1 404 1 MG MG . M 2 CRN B 1 401 401 CRN CRN . N 3 ADP B 1 402 402 ADP ADP . O 4 NO3 B 1 403 403 NO3 NO3 . P 5 MG B 1 404 2 MG MG . Q 2 CRN C 1 401 401 CRN CRN . R 3 ADP C 1 402 402 ADP ADP . S 4 NO3 C 1 403 403 NO3 NO3 . T 5 MG C 1 404 3 MG MG . U 2 CRN D 1 401 401 CRN CRN . V 3 ADP D 1 402 402 ADP ADP . W 4 NO3 D 1 403 403 NO3 NO3 . X 5 MG D 1 404 4 MG MG . Y 2 CRN E 1 401 401 CRN CRN . Z 3 ADP E 1 402 402 ADP ADP . AA 4 NO3 E 1 403 403 NO3 NO3 . BA 5 MG E 1 404 5 MG MG . CA 2 CRN F 1 401 401 CRN CRN . DA 3 ADP F 1 402 402 ADP ADP . EA 4 NO3 F 1 403 403 NO3 NO3 . FA 5 MG F 1 404 6 MG MG . GA 2 CRN G 1 401 401 CRN CRN . HA 3 ADP G 1 402 402 ADP ADP . IA 4 NO3 G 1 403 403 NO3 NO3 . JA 5 MG G 1 404 7 MG MG . KA 2 CRN H 1 401 401 CRN CRN . LA 3 ADP H 1 402 402 ADP ADP . MA 4 NO3 H 1 403 403 NO3 NO3 . NA 5 MG H 1 404 8 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 CRN . . . KA 2 175.355 137.805 153.364 1 123.5 ? O9 CRN 401 H 1 HETATM 2 C C7 CRN . . . KA 2 175.151 138.416 152.301 1 120.29 ? C7 CRN 401 H 1 HETATM 3 O O8 CRN . . . KA 2 174.496 138.019 151.315 1 112.41 ? O8 CRN 401 H 1 HETATM 4 C C5 CRN . . . KA 2 175.758 139.824 152.163 1 124.72 ? C5 CRN 401 H 1 HETATM 5 N N1 CRN . . . KA 2 176.38 140.091 150.889 1 124.92 ? N1 CRN 401 H 1 HETATM 6 C C4 CRN . . . KA 2 177.818 140.228 150.859 1 124.36 ? C4 CRN 401 H 1 HETATM 7 C C2 CRN . . . KA 2 175.605 140.21 149.76 1 122.01 ? C2 CRN 401 H 1 HETATM 8 N N6 CRN . . . KA 2 176.179 140.448 148.633 1 121.44 ? N6 CRN 401 H 1 HETATM 9 N N3 CRN . . . KA 2 174.243 140.063 149.89 1 120.01 ? N3 CRN 401 H 1 HETATM 10 H H51 CRN . . . KA 2 176.395 139.975 152.879 1 123.54 ? H51 CRN 401 H 1 HETATM 11 H H52 CRN . . . KA 2 175.054 140.478 152.292 1 119.94 ? H52 CRN 401 H 1 HETATM 12 H H41 CRN . . . KA 2 178.158 139.828 150.044 1 123.72 ? H41 CRN 401 H 1 HETATM 13 H H42 CRN . . . KA 2 178.233 139.745 151.591 1 125.59 ? H42 CRN 401 H 1 HETATM 14 H H43 CRN . . . KA 2 178.12 141.149 150.885 1 123.44 ? H43 CRN 401 H 1 HETATM 15 H HN31 CRN . . . KA 2 173.877 139.899 150.683 1 117.91 ? HN31 CRN 401 H 1 HETATM 16 H HN32 CRN . . . KA 2 173.681 140.126 149.203 1 116.24 ? HN32 CRN 401 H 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 111 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #