data_9B0X
#
_model_server_result.job_id            vZ86ScZLkSBfPoxPoar37w 
_model_server_result.datetime_utc      '2025-09-17 22:19:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b0x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":601}' 
#
_entry.id    9B0X 
#
_exptl.entry_id    9B0X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          18 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B0X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B0X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 CA N N 
? 18 EA N N 
? 18 GA N N 
? 18 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I OG1 THR 217 A THR 176 1_555 DA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc2 CA O2G ATP . A ATP 601 1_555 DA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
metalc ? metalc3 CA O2B ATP . A ATP 601 1_555 DA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? 
metalc ? metalc4 J OG1 THR 217 B THR 176 1_555 FA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc5 EA O2G ATP . B ATP 601 1_555 FA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc6 EA O2B ATP . B ATP 601 1_555 FA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
metalc ? metalc7 K OG1 THR 217 C THR 176 1_555 HA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc8 GA O2G ATP . C ATP 601 1_555 HA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc9 GA O2B ATP . C ATP 601 1_555 HA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc10 L OG1 THR 210 D THR 166 1_555 JA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc11 IA O2G ATP . D ATP 601 1_555 JA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc12 IA O2B ATP . D ATP 601 1_555 JA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc13 M OG1 THR 210 E THR 166 1_555 LA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc14 KA O2B ADP . E ADP 601 1_555 LA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     9B0X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 18 ATP A 1 601 601 ATP ATP . 
DA 19 MG A 1 602 602 MG MG . 
EA 18 ATP B 1 601 601 ATP ATP . 
FA 19 MG B 1 602 602 MG MG . 
GA 18 ATP C 1 601 601 ATP ATP . 
HA 19 MG C 1 602 602 MG MG . 
IA 18 ATP D 1 601 601 ATP ATP . 
JA 19 MG D 1 602 602 MG MG . 
KA 20 ADP E 1 601 601 ADP ADP . 
LA 19 MG E 1 602 602 MG MG . 
MA 21 CDL K 1 301 3 CDL CDL . 
NA 21 CDL K 1 302 4 CDL CDL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . GA 18 254.905 248.998 234.906 1 57.94 ? PG ATP 601 C 1 
HETATM 2 O O1G ATP . . . GA 18 255.321 247.558 234.761 1 64.33 ? O1G ATP 601 C 1 
HETATM 3 O O2G ATP . . . GA 18 253.858 249.407 233.913 1 64.32 -1 O2G ATP 601 C 1 
HETATM 4 O O3G ATP . . . GA 18 256.039 249.976 234.991 1 50.57 ? O3G ATP 601 C 1 
HETATM 5 P PB ATP . . . GA 18 252.86 249.912 236.72 1 54.28 ? PB ATP 601 C 1 
HETATM 6 O O1B ATP . . . GA 18 253.279 251.218 237.269 1 50.92 -1 O1B ATP 601 C 1 
HETATM 7 O O2B ATP . . . GA 18 251.991 249.912 235.526 1 56.2 ? O2B ATP 601 C 1 
HETATM 8 O O3B ATP . . . GA 18 254.158 249.066 236.34 1 59.83 ? O3B ATP 601 C 1 
HETATM 9 P PA ATP . . . GA 18 251.426 247.639 237.917 1 53.81 ? PA ATP 601 C 1 
HETATM 10 O O1A ATP . . . GA 18 252.042 246.734 236.916 1 60.24 -1 O1A ATP 601 C 1 
HETATM 11 O O2A ATP . . . GA 18 249.954 247.776 237.896 1 53.81 ? O2A ATP 601 C 1 
HETATM 12 O O3A ATP . . . GA 18 252.154 249.06 237.886 1 54.32 ? O3A ATP 601 C 1 
HETATM 13 O O5' ATP . . . GA 18 251.863 247.175 239.394 1 61.51 ? O5' ATP 601 C 1 
HETATM 14 C C5' ATP . . . GA 18 253.068 246.44 239.601 1 58.57 ? C5' ATP 601 C 1 
HETATM 15 C C4' ATP . . . GA 18 252.811 245.163 240.36 1 62.71 ? C4' ATP 601 C 1 
HETATM 16 O O4' ATP . . . GA 18 252.163 245.462 241.623 1 61.68 ? O4' ATP 601 C 1 
HETATM 17 C C3' ATP . . . GA 18 251.929 244.124 239.678 1 68.63 ? C3' ATP 601 C 1 
HETATM 18 O O3' ATP . . . GA 18 252.402 242.805 239.866 1 74.33 ? O3' ATP 601 C 1 
HETATM 19 C C2' ATP . . . GA 18 250.557 244.37 240.3 1 66.18 ? C2' ATP 601 C 1 
HETATM 20 O O2' ATP . . . GA 18 249.837 243.147 240.356 1 70.76 ? O2' ATP 601 C 1 
HETATM 21 C C1' ATP . . . GA 18 250.947 244.762 241.719 1 63.07 ? C1' ATP 601 C 1 
HETATM 22 N N9 ATP . . . GA 18 249.949 245.646 242.355 1 61.6 ? N9 ATP 601 C 1 
HETATM 23 C C8 ATP . . . GA 18 249.533 246.884 241.934 1 60.32 ? C8 ATP 601 C 1 
HETATM 24 N N7 ATP . . . GA 18 248.631 247.431 242.711 1 61.89 ? N7 ATP 601 C 1 
HETATM 25 C C5 ATP . . . GA 18 248.441 246.49 243.713 1 63.57 ? C5 ATP 601 C 1 
HETATM 26 C C6 ATP . . . GA 18 247.609 246.469 244.846 1 62.62 ? C6 ATP 601 C 1 
HETATM 27 N N6 ATP . . . GA 18 246.778 247.46 245.175 1 62.66 ? N6 ATP 601 C 1 
HETATM 28 N N1 ATP . . . GA 18 247.661 245.38 245.642 1 63.8 ? N1 ATP 601 C 1 
HETATM 29 C C2 ATP . . . GA 18 248.493 244.385 245.313 1 64.47 ? C2 ATP 601 C 1 
HETATM 30 N N3 ATP . . . GA 18 249.323 244.289 244.278 1 65.23 ? N3 ATP 601 C 1 
HETATM 31 C C4 ATP . . . GA 18 249.247 245.387 243.507 1 63.94 ? C4 ATP 601 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#