data_9B16
#
_model_server_result.job_id            xXSS6CRd8veTdYONz3w6pQ 
_model_server_result.datetime_utc      '2025-03-02 23:49:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b16 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":402}' 
#
_entry.id    9B16 
#
_exptl.entry_id    9B16 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              254.67 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-4-(chloroacetyl)-3,4-dihydro-2H-1,4-benzoxazine-2-carboxamide 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B16 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B16 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 306 A CYS 278 1_555 J C5 KLU . A KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
covale ? covale2 B SG CYS 306 B CYS 278 1_555 L C5 KLU . B KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.711 ? 
covale ? covale3 C SG CYS 306 C CYS 278 1_555 N C5 KLU . C KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? 
covale ? covale4 D SG CYS 306 D CYS 278 1_555 P C5 KLU . D KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? 
covale ? covale5 E SG CYS 306 E CYS 278 1_555 R C5 KLU . E KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? 
covale ? covale6 F SG CYS 306 F CYS 278 1_555 T C5 KLU . F KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? 
covale ? covale7 G SG CYS 306 G CYS 278 1_555 V C5 KLU . G KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? 
covale ? covale8 H SG CYS 306 H CYS 278 1_555 X C5 KLU . H KLU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? 
#
_chem_comp.formula           'C11 H11 Cl N2 O3' 
_chem_comp.formula_weight    254.67 
_chem_comp.id                KLU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-4-(chloroacetyl)-3,4-dihydro-2H-1,4-benzoxazine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C10 KLU doub 215 n y 
C9 C8 KLU sing 216 n y 
C10 C11 KLU sing 217 n y 
C8 C7 KLU doub 218 n y 
C11 O3 KLU sing 219 n n 
C11 C6 KLU doub 220 n y 
O3 C2 KLU sing 221 n n 
C7 C6 KLU sing 222 n y 
N2 C1 KLU sing 223 n n 
C6 N1 KLU sing 224 n n 
C1 O1 KLU doub 225 n n 
C1 C2 KLU sing 226 n n 
C2 C3 KLU sing 227 n n 
C3 N1 KLU sing 228 n n 
N1 C4 KLU sing 229 n n 
C4 C5 KLU sing 230 n n 
C4 O2 KLU doub 231 n n 
C5 CL1 KLU sing 232 n n 
C5 H12 KLU sing 233 n n 
C5 H5 KLU sing 234 n n 
C7 H6 KLU sing 235 n n 
C8 H7 KLU sing 236 n n 
C10 H9 KLU sing 237 n n 
C2 H1 KLU sing 238 n n 
C3 H3 KLU sing 239 n n 
C3 H2 KLU sing 240 n n 
C9 H8 KLU sing 241 n n 
N2 H11 KLU sing 242 n n 
N2 H10 KLU sing 243 n n 
#
_atom_sites.entry_id                     9B16 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ADP A 1 401 402 ADP ADP . 
J 3 KLU A 1 402 403 KLU KLU . 
K 2 ADP B 1 401 402 ADP ADP . 
L 3 KLU B 1 402 403 KLU KLU . 
M 2 ADP C 1 401 402 ADP ADP . 
N 3 KLU C 1 402 403 KLU KLU . 
O 2 ADP D 1 401 402 ADP ADP . 
P 3 KLU D 1 402 403 KLU KLU . 
Q 2 ADP E 1 401 402 ADP ADP . 
R 3 KLU E 1 402 403 KLU KLU . 
S 2 ADP F 1 401 402 ADP ADP . 
T 3 KLU F 1 402 403 KLU KLU . 
U 2 ADP G 1 401 402 ADP ADP . 
V 3 KLU G 1 402 403 KLU KLU . 
W 2 ADP H 1 401 402 ADP ADP . 
X 3 KLU H 1 402 403 KLU KLU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 KLU . . . J 3 160.565 165.038 149.83 1 134.8 ? N1 KLU 402 A 1 
HETATM 2 C C4 KLU . . . J 3 160.192 165.957 150.758 1 145.95 ? C4 KLU 402 A 1 
HETATM 3 C C5 KLU . . . J 3 160.604 165.752 152.26 1 157.97 ? C5 KLU 402 A 1 
HETATM 4 C C6 KLU . . . J 3 160.237 165.088 148.466 1 131.58 ? C6 KLU 402 A 1 
HETATM 5 C C7 KLU . . . J 3 159.055 165.657 148.017 1 129.94 ? C7 KLU 402 A 1 
HETATM 6 C C8 KLU . . . J 3 158.77 165.665 146.641 1 132.96 ? C8 KLU 402 A 1 
HETATM 7 C C10 KLU . . . J 3 160.819 164.521 146.184 1 133.59 ? C10 KLU 402 A 1 
HETATM 8 C C1 KLU . . . J 3 163.14 162.323 149.484 1 137.94 ? C1 KLU 402 A 1 
HETATM 9 C C11 KLU . . . J 3 161.112 164.51 147.546 1 134.99 ? C11 KLU 402 A 1 
HETATM 10 C C2 KLU . . . J 3 162.583 163.727 149.339 1 140.13 ? C2 KLU 402 A 1 
HETATM 11 C C3 KLU . . . J 3 161.367 163.88 150.237 1 132.85 ? C3 KLU 402 A 1 
HETATM 12 C C9 KLU . . . J 3 159.647 165.095 145.743 1 133.11 ? C9 KLU 402 A 1 
HETATM 13 N N2 KLU . . . J 3 162.813 161.397 148.602 1 124.75 ? N2 KLU 402 A 1 
HETATM 14 O O1 KLU . . . J 3 163.893 162.048 150.416 1 138.73 ? O1 KLU 402 A 1 
HETATM 15 O O2 KLU . . . J 3 159.53 166.9 150.457 1 141.38 ? O2 KLU 402 A 1 
HETATM 16 O O3 KLU . . . J 3 162.294 163.922 147.943 1 140.87 ? O3 KLU 402 A 1 
HETATM 17 H H9 KLU . . . J 3 161.517 164.071 145.47 1 127.78 ? H9 KLU 402 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#