data_9B17
#
_model_server_result.job_id            KQ-8CTb8qRId2EVcfudpvQ 
_model_server_result.datetime_utc      '2024-10-15 09:23:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    9B17 
#
_exptl.entry_id    9B17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B17 
_cell.length_a            143.61 
_cell.length_b            154.014 
_cell.length_c            88.58 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     9B17 
_atom_sites.fract_transf_matrix[1][1]    0.006963 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006493 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 A1AH9 A 1 402 402 A1AH9 23d . 
G 4 ZIQ A 1 403 403 ZIQ ZIQ . 
H 2 HEM B 1 401 401 HEM HEM . 
I 3 A1AH9 B 1 402 402 A1AH9 23d . 
J 4 ZIQ B 1 403 403 ZIQ ZIQ . 
K 2 HEM C 1 401 401 HEM HEM . 
L 3 A1AH9 C 1 402 402 A1AH9 23d . 
M 4 ZIQ C 1 403 403 ZIQ ZIQ . 
N 2 HEM D 1 401 401 HEM HEM . 
O 3 A1AH9 D 1 402 402 A1AH9 23d . 
P 4 ZIQ D 1 403 403 ZIQ ZIQ . 
Q 5 HOH A 1 501 11 HOH HOH . 
Q 5 HOH A 2 502 2 HOH HOH . 
Q 5 HOH A 3 503 3 HOH HOH . 
Q 5 HOH A 4 504 13 HOH HOH . 
Q 5 HOH A 5 505 1 HOH HOH . 
R 5 HOH B 1 501 5 HOH HOH . 
R 5 HOH B 2 502 16 HOH HOH . 
R 5 HOH B 3 503 9 HOH HOH . 
R 5 HOH B 4 504 4 HOH HOH . 
R 5 HOH B 5 505 14 HOH HOH . 
S 5 HOH C 1 501 8 HOH HOH . 
S 5 HOH C 2 502 10 HOH HOH . 
S 5 HOH C 3 503 12 HOH HOH . 
S 5 HOH C 4 504 18 HOH HOH . 
S 5 HOH C 5 505 17 HOH HOH . 
T 5 HOH D 1 501 15 HOH HOH . 
T 5 HOH D 2 502 19 HOH HOH . 
T 5 HOH D 3 503 7 HOH HOH . 
T 5 HOH D 4 504 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 2 -9.192 18.624 7.823 1 73.27 ? CHA HEM 401 B 1 
HETATM 2 C CHB HEM . . . H 2 -11.307 21.897 10.705 1 70.51 ? CHB HEM 401 B 1 
HETATM 3 C CHC HEM . . . H 2 -14.92 22.318 7.497 1 62.34 ? CHC HEM 401 B 1 
HETATM 4 C CHD HEM . . . H 2 -13.327 18.31 5.297 1 67.35 ? CHD HEM 401 B 1 
HETATM 5 C C1A HEM . . . H 2 -9.452 19.507 8.841 1 75.52 ? C1A HEM 401 B 1 
HETATM 6 C C2A HEM . . . H 2 -8.533 19.804 9.855 1 78.56 ? C2A HEM 401 B 1 
HETATM 7 C C3A HEM . . . H 2 -9.124 20.736 10.676 1 79.7 ? C3A HEM 401 B 1 
HETATM 8 C C4A HEM . . . H 2 -10.422 21 10.165 1 74.57 ? C4A HEM 401 B 1 
HETATM 9 C CMA HEM . . . H 2 -8.532 21.37 11.924 1 81.48 ? CMA HEM 401 B 1 
HETATM 10 C CAA HEM . . . H 2 -7.156 19.207 9.983 1 80.67 ? CAA HEM 401 B 1 
HETATM 11 C CBA HEM . . . H 2 -7.227 17.859 10.731 1 83.17 ? CBA HEM 401 B 1 
HETATM 12 C CGA HEM . . . H 2 -7.597 17.958 12.209 1 83.07 ? CGA HEM 401 B 1 
HETATM 13 O O1A HEM . . . H 2 -8.485 17.226 12.688 1 81.71 ? O1A HEM 401 B 1 
HETATM 14 O O2A HEM . . . H 2 -7.029 18.746 12.995 1 83.75 ? O2A HEM 401 B 1 
HETATM 15 C C1B HEM . . . H 2 -12.46 22.303 10.036 1 67.53 ? C1B HEM 401 B 1 
HETATM 16 C C2B HEM . . . H 2 -13.297 23.346 10.516 1 64.21 ? C2B HEM 401 B 1 
HETATM 17 C C3B HEM . . . H 2 -14.289 23.502 9.628 1 59.25 ? C3B HEM 401 B 1 
HETATM 18 C C4B HEM . . . H 2 -14.068 22.496 8.585 1 61.71 ? C4B HEM 401 B 1 
HETATM 19 C CMB HEM . . . H 2 -13.065 24.155 11.749 1 67.78 ? CMB HEM 401 B 1 
HETATM 20 C CAB HEM . . . H 2 -15.443 24.364 9.667 1 60.7 ? CAB HEM 401 B 1 
HETATM 21 C CBB HEM . . . H 2 -15.928 24.822 10.803 1 65.03 ? CBB HEM 401 B 1 
HETATM 22 C C1C HEM . . . H 2 -14.822 21.261 6.612 1 63.37 ? C1C HEM 401 B 1 
HETATM 23 C C2C HEM . . . H 2 -15.661 21.016 5.533 1 64.63 ? C2C HEM 401 B 1 
HETATM 24 C C3C HEM . . . H 2 -15.216 19.87 4.893 1 65.81 ? C3C HEM 401 B 1 
HETATM 25 C C4C HEM . . . H 2 -14.097 19.393 5.634 1 67.48 ? C4C HEM 401 B 1 
HETATM 26 C CMC HEM . . . H 2 -16.849 21.848 5.114 1 65.78 ? CMC HEM 401 B 1 
HETATM 27 C CAC HEM . . . H 2 -15.93 19.261 3.741 1 64.7 ? CAC HEM 401 B 1 
HETATM 28 C CBC HEM . . . H 2 -15.812 17.978 3.4 1 63.42 ? CBC HEM 401 B 1 
HETATM 29 C C1D HEM . . . H 2 -12.062 18.132 5.799 1 70.66 ? C1D HEM 401 B 1 
HETATM 30 C C2D HEM . . . H 2 -11.152 17.122 5.256 1 70.57 ? C2D HEM 401 B 1 
HETATM 31 C C3D HEM . . . H 2 -10.004 17.223 5.964 1 74.47 ? C3D HEM 401 B 1 
HETATM 32 C C4D HEM . . . H 2 -10.194 18.301 6.916 1 74.96 ? C4D HEM 401 B 1 
HETATM 33 C CMD HEM . . . H 2 -11.432 16.137 4.149 1 66.06 ? CMD HEM 401 B 1 
HETATM 34 C CAD HEM . . . H 2 -8.739 16.425 5.801 1 77.2 ? CAD HEM 401 B 1 
HETATM 35 C CBD HEM . . . H 2 -7.884 17.224 4.775 1 74.31 ? CBD HEM 401 B 1 
HETATM 36 C CGD HEM . . . H 2 -6.551 16.578 4.43 1 70.6 ? CGD HEM 401 B 1 
HETATM 37 O O1D HEM . . . H 2 -6.07 15.774 5.245 1 70.84 ? O1D HEM 401 B 1 
HETATM 38 O O2D HEM . . . H 2 -5.911 16.824 3.371 1 62.75 ? O2D HEM 401 B 1 
HETATM 39 N NA HEM . . . H 2 -10.616 20.248 9.05 1 76.05 ? NA HEM 401 B 1 
HETATM 40 N NB HEM . . . H 2 -12.957 21.837 8.893 1 66.2 ? NB HEM 401 B 1 
HETATM 41 N NC HEM . . . H 2 -13.89 20.284 6.655 1 67.01 ? NC HEM 401 B 1 
HETATM 42 N ND HEM . . . H 2 -11.45 18.819 6.779 1 77.35 ? ND HEM 401 B 1 
HETATM 43 FE FE HEM . . . H 2 -12.149 20.278 7.776 1 73.7 ? FE HEM 401 B 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#