data_9B17
#
_model_server_result.job_id            x-VelI72HMp-JiRE3tLgPA 
_model_server_result.datetime_utc      '2024-10-15 09:14:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    9B17 
#
_exptl.entry_id    9B17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              346.429 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5P)-5-(1H-indol-3-yl)-1-[2-(piperazin-1-yl)ethyl]-1H-1,2,3-benzotriazole 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B17 
_cell.length_a            143.61 
_cell.length_b            154.014 
_cell.length_c            88.58 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C20 H22 N6' 
_chem_comp.formula_weight    346.429 
_chem_comp.id                A1AH9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5P)-5-(1H-indol-3-yl)-1-[2-(piperazin-1-yl)ethyl]-1H-1,2,3-benzotriazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C13 A1AH9 sing 1 n n 
C12 N3 A1AH9 sing 2 n n 
N2 N3 A1AH9 sing 3 n y 
N2 N1 A1AH9 doub 4 n y 
C13 N4 A1AH9 sing 5 n n 
C17 N4 A1AH9 sing 6 n n 
C17 C16 A1AH9 sing 7 n n 
N4 C14 A1AH9 sing 8 n n 
N3 C9 A1AH9 sing 9 n y 
C16 N5 A1AH9 sing 10 n n 
N1 C10 A1AH9 sing 11 n y 
N5 C15 A1AH9 sing 12 n n 
C9 C10 A1AH9 doub 13 n y 
C9 C8 A1AH9 sing 14 n y 
C14 C15 A1AH9 sing 15 n n 
C10 C11 A1AH9 sing 16 n y 
C8 C7 A1AH9 doub 17 n y 
C11 C6 A1AH9 doub 18 n y 
C7 C6 A1AH9 sing 19 n y 
C6 C5 A1AH9 sing 20 n n 
C5 C18 A1AH9 doub 21 n y 
C5 C4 A1AH9 sing 22 n y 
C18 N6 A1AH9 sing 23 n y 
C4 C3 A1AH9 sing 24 n y 
C4 C19 A1AH9 doub 25 n y 
C3 C2 A1AH9 doub 26 n y 
N6 C19 A1AH9 sing 27 n y 
C19 C20 A1AH9 sing 28 n y 
C2 C1 A1AH9 sing 29 n y 
C20 C1 A1AH9 doub 30 n y 
C1 H1 A1AH9 sing 31 n n 
C2 H2 A1AH9 sing 32 n n 
C3 H3 A1AH9 sing 33 n n 
C7 H4 A1AH9 sing 34 n n 
C8 H5 A1AH9 sing 35 n n 
C11 H6 A1AH9 sing 36 n n 
C12 H7 A1AH9 sing 37 n n 
C12 H8 A1AH9 sing 38 n n 
C13 H9 A1AH9 sing 39 n n 
C13 H10 A1AH9 sing 40 n n 
C14 H12 A1AH9 sing 41 n n 
C14 H13 A1AH9 sing 42 n n 
C15 H14 A1AH9 sing 43 n n 
C15 H15 A1AH9 sing 44 n n 
N5 H16 A1AH9 sing 45 n n 
C16 H18 A1AH9 sing 46 n n 
C16 H19 A1AH9 sing 47 n n 
C17 H20 A1AH9 sing 48 n n 
C17 H21 A1AH9 sing 49 n n 
C18 H22 A1AH9 sing 50 n n 
N6 H23 A1AH9 sing 51 n n 
C20 H24 A1AH9 sing 52 n n 
#
_atom_sites.entry_id                     9B17 
_atom_sites.fract_transf_matrix[1][1]    0.006963 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006493 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 401 401 HEM HEM . 
F 3 A1AH9 A 1 402 402 A1AH9 23d . 
G 4 ZIQ A 1 403 403 ZIQ ZIQ . 
H 2 HEM B 1 401 401 HEM HEM . 
I 3 A1AH9 B 1 402 402 A1AH9 23d . 
J 4 ZIQ B 1 403 403 ZIQ ZIQ . 
K 2 HEM C 1 401 401 HEM HEM . 
L 3 A1AH9 C 1 402 402 A1AH9 23d . 
M 4 ZIQ C 1 403 403 ZIQ ZIQ . 
N 2 HEM D 1 401 401 HEM HEM . 
O 3 A1AH9 D 1 402 402 A1AH9 23d . 
P 4 ZIQ D 1 403 403 ZIQ ZIQ . 
Q 5 HOH A 1 501 11 HOH HOH . 
Q 5 HOH A 2 502 2 HOH HOH . 
Q 5 HOH A 3 503 3 HOH HOH . 
Q 5 HOH A 4 504 13 HOH HOH . 
Q 5 HOH A 5 505 1 HOH HOH . 
R 5 HOH B 1 501 5 HOH HOH . 
R 5 HOH B 2 502 16 HOH HOH . 
R 5 HOH B 3 503 9 HOH HOH . 
R 5 HOH B 4 504 4 HOH HOH . 
R 5 HOH B 5 505 14 HOH HOH . 
S 5 HOH C 1 501 8 HOH HOH . 
S 5 HOH C 2 502 10 HOH HOH . 
S 5 HOH C 3 503 12 HOH HOH . 
S 5 HOH C 4 504 18 HOH HOH . 
S 5 HOH C 5 505 17 HOH HOH . 
T 5 HOH D 1 501 15 HOH HOH . 
T 5 HOH D 2 502 19 HOH HOH . 
T 5 HOH D 3 503 7 HOH HOH . 
T 5 HOH D 4 504 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A1AH9 . . . F 3 -37.812 13.096 -9 1 55.34 ? C1 A1AH9 402 A 1 
HETATM 2 C C2 A1AH9 . . . F 3 -38.529 12.407 -9.975 1 58.47 ? C2 A1AH9 402 A 1 
HETATM 3 C C3 A1AH9 . . . F 3 -39.008 13.053 -11.096 1 59 ? C3 A1AH9 402 A 1 
HETATM 4 C C4 A1AH9 . . . F 3 -38.773 14.422 -11.242 1 57.69 ? C4 A1AH9 402 A 1 
HETATM 5 C C5 A1AH9 . . . F 3 -39.107 15.405 -12.243 1 61.26 ? C5 A1AH9 402 A 1 
HETATM 6 C C6 A1AH9 . . . F 3 -39.858 15.138 -13.483 1 65.59 ? C6 A1AH9 402 A 1 
HETATM 7 C C7 A1AH9 . . . F 3 -41.155 15.671 -13.665 1 70.13 ? C7 A1AH9 402 A 1 
HETATM 8 C C8 A1AH9 . . . F 3 -41.876 15.446 -14.818 1 75.88 ? C8 A1AH9 402 A 1 
HETATM 9 C C9 A1AH9 . . . F 3 -41.299 14.656 -15.812 1 79.9 ? C9 A1AH9 402 A 1 
HETATM 10 C C10 A1AH9 . . . F 3 -40.027 14.114 -15.65 1 74.93 ? C10 A1AH9 402 A 1 
HETATM 11 C C11 A1AH9 . . . F 3 -39.305 14.365 -14.468 1 67.38 ? C11 A1AH9 402 A 1 
HETATM 12 N N1 A1AH9 . . . F 3 -39.718 13.377 -16.772 1 79.79 ? N1 A1AH9 402 A 1 
HETATM 13 N N2 A1AH9 . . . F 3 -40.716 13.454 -17.597 1 85.85 ? N2 A1AH9 402 A 1 
HETATM 14 N N3 A1AH9 . . . F 3 -41.692 14.217 -17.05 1 92.46 ? N3 A1AH9 402 A 1 
HETATM 15 C C12 A1AH9 . . . F 3 -42.939 14.374 -17.796 1 107.83 ? C12 A1AH9 402 A 1 
HETATM 16 C C13 A1AH9 . . . F 3 -43.743 15.628 -17.473 1 121.79 ? C13 A1AH9 402 A 1 
HETATM 17 N N4 A1AH9 . . . F 3 -45.135 15.344 -17.118 1 137.8 ? N4 A1AH9 402 A 1 
HETATM 18 C C14 A1AH9 . . . F 3 -45.274 14.715 -15.789 1 136.21 ? C14 A1AH9 402 A 1 
HETATM 19 C C15 A1AH9 . . . F 3 -46.505 15.194 -15.048 1 138.62 ? C15 A1AH9 402 A 1 
HETATM 20 N N5 A1AH9 . . . F 3 -47.661 15.336 -15.947 1 149.98 ? N5 A1AH9 402 A 1 
HETATM 21 C C16 A1AH9 . . . F 3 -47.404 16.32 -17.005 1 146.88 ? C16 A1AH9 402 A 1 
HETATM 22 C C17 A1AH9 . . . F 3 -45.928 16.587 -17.189 1 145.29 ? C17 A1AH9 402 A 1 
HETATM 23 C C18 A1AH9 . . . F 3 -38.589 16.604 -11.788 1 58.51 ? C18 A1AH9 402 A 1 
HETATM 24 N N6 A1AH9 . . . F 3 -37.948 16.422 -10.6 1 55.98 ? N6 A1AH9 402 A 1 
HETATM 25 C C19 A1AH9 . . . F 3 -38.05 15.096 -10.234 1 55.07 ? C19 A1AH9 402 A 1 
HETATM 26 C C20 A1AH9 . . . F 3 -37.564 14.442 -9.11 1 53.85 ? C20 A1AH9 402 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           168 
_model_server_stats.create_model_time_ms    65 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#