data_9B17 # _model_server_result.job_id TU2bXtKiWgAKWf2cLzdC9w _model_server_result.datetime_utc '2024-10-15 09:15:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 9B17 # _exptl.entry_id 9B17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.252 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-methyl-L-tryptophan _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B17 _cell.length_a 143.61 _cell.length_b 154.014 _cell.length_c 88.58 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C12 H14 N2 O2' _chem_comp.formula_weight 218.252 _chem_comp.id ZIQ _chem_comp.mon_nstd_flag n _chem_comp.name alpha-methyl-L-tryptophan _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CA ZIQ sing 510 n n O C ZIQ doub 511 n n CA C ZIQ sing 512 n n CA N ZIQ sing 513 n n CA CB ZIQ sing 514 n n C OXT ZIQ sing 515 n n CB CG ZIQ sing 516 n n CG CD1 ZIQ doub 517 n y CG CD2 ZIQ sing 518 n y CD1 NE1 ZIQ sing 519 n y CE3 CD2 ZIQ doub 520 n y CE3 CZ3 ZIQ sing 521 n y CD2 CE2 ZIQ sing 522 n y NE1 CE2 ZIQ sing 523 n y CZ3 CH2 ZIQ doub 524 n y CE2 CZ2 ZIQ doub 525 n y CH2 CZ2 ZIQ sing 526 n y N H ZIQ sing 527 n n N H2 ZIQ sing 528 n n CB H4 ZIQ sing 529 n n CB H5 ZIQ sing 530 n n CE3 H6 ZIQ sing 531 n n CZ3 H7 ZIQ sing 532 n n CH2 H8 ZIQ sing 533 n n CZ2 H9 ZIQ sing 534 n n NE1 H10 ZIQ sing 535 n n CD1 H11 ZIQ sing 536 n n C1 H12 ZIQ sing 537 n n C1 H13 ZIQ sing 538 n n C1 H14 ZIQ sing 539 n n OXT HXT ZIQ sing 540 n n # _atom_sites.entry_id 9B17 _atom_sites.fract_transf_matrix[1][1] 0.006963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 A1AH9 A 1 402 402 A1AH9 23d . G 4 ZIQ A 1 403 403 ZIQ ZIQ . H 2 HEM B 1 401 401 HEM HEM . I 3 A1AH9 B 1 402 402 A1AH9 23d . J 4 ZIQ B 1 403 403 ZIQ ZIQ . K 2 HEM C 1 401 401 HEM HEM . L 3 A1AH9 C 1 402 402 A1AH9 23d . M 4 ZIQ C 1 403 403 ZIQ ZIQ . N 2 HEM D 1 401 401 HEM HEM . O 3 A1AH9 D 1 402 402 A1AH9 23d . P 4 ZIQ D 1 403 403 ZIQ ZIQ . Q 5 HOH A 1 501 11 HOH HOH . Q 5 HOH A 2 502 2 HOH HOH . Q 5 HOH A 3 503 3 HOH HOH . Q 5 HOH A 4 504 13 HOH HOH . Q 5 HOH A 5 505 1 HOH HOH . R 5 HOH B 1 501 5 HOH HOH . R 5 HOH B 2 502 16 HOH HOH . R 5 HOH B 3 503 9 HOH HOH . R 5 HOH B 4 504 4 HOH HOH . R 5 HOH B 5 505 14 HOH HOH . S 5 HOH C 1 501 8 HOH HOH . S 5 HOH C 2 502 10 HOH HOH . S 5 HOH C 3 503 12 HOH HOH . S 5 HOH C 4 504 18 HOH HOH . S 5 HOH C 5 505 17 HOH HOH . T 5 HOH D 1 501 15 HOH HOH . T 5 HOH D 2 502 19 HOH HOH . T 5 HOH D 3 503 7 HOH HOH . T 5 HOH D 4 504 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ZIQ . . . J 4 -7.536 4.947 -28.747 1 71.36 ? N ZIQ 403 B 1 HETATM 2 C CA ZIQ . . . J 4 -6.261 4.348 -29.186 1 69.7 ? CA ZIQ 403 B 1 HETATM 3 C CB ZIQ . . . J 4 -5.224 5.404 -29.675 1 67.12 ? CB ZIQ 403 B 1 HETATM 4 C CG ZIQ . . . J 4 -4.872 6.517 -28.726 1 63.89 ? CG ZIQ 403 B 1 HETATM 5 C CD2 ZIQ . . . J 4 -5.087 7.919 -28.963 1 61.8 ? CD2 ZIQ 403 B 1 HETATM 6 C CE3 ZIQ . . . J 4 -5.664 8.648 -30.007 1 61.37 ? CE3 ZIQ 403 B 1 HETATM 7 C CZ3 ZIQ . . . J 4 -5.73 10.017 -29.9 1 59.95 ? CZ3 ZIQ 403 B 1 HETATM 8 C CH2 ZIQ . . . J 4 -5.218 10.682 -28.784 1 57.05 ? CH2 ZIQ 403 B 1 HETATM 9 C CZ2 ZIQ . . . J 4 -4.641 10.001 -27.74 1 56.66 ? CZ2 ZIQ 403 B 1 HETATM 10 C CE2 ZIQ . . . J 4 -4.592 8.614 -27.839 1 60.11 ? CE2 ZIQ 403 B 1 HETATM 11 N NE1 ZIQ . . . J 4 -4.088 7.686 -26.969 1 63.17 ? NE1 ZIQ 403 B 1 HETATM 12 C CD1 ZIQ . . . J 4 -4.253 6.438 -27.509 1 64.1 ? CD1 ZIQ 403 B 1 HETATM 13 C C1 ZIQ . . . J 4 -6.587 3.439 -30.365 1 68.79 ? C1 ZIQ 403 B 1 HETATM 14 C C ZIQ . . . J 4 -5.742 3.506 -27.995 1 76.35 ? C ZIQ 403 B 1 HETATM 15 O O ZIQ . . . J 4 -4.695 2.831 -28.185 1 91.87 ? O ZIQ 403 B 1 HETATM 16 O OXT ZIQ . . . J 4 -6.394 3.576 -26.927 1 73.24 ? OXT ZIQ 403 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #