data_9B1I # _model_server_result.job_id ctGihDcRv9DhmhLiVgrA6w _model_server_result.datetime_utc '2024-11-22 14:07:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9B1I # _exptl.entry_id 9B1I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.418 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description verinurad _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B1I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 49 1_555 A SG CYS 111 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 83 A CYS 85 1_555 A SG CYS 134 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 54 A ASN 56 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C20 H16 N2 O2 S' _chem_comp.formula_weight 348.418 _chem_comp.id A1AIJ _chem_comp.mon_nstd_flag . _chem_comp.name verinurad _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-{[(3P)-3-(4-cyanonaphthalen-1-yl)pyridin-4-yl]sulfanyl}-2-methylpropanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C10 A1AIJ doub 1 n y N11 C12 A1AIJ sing 2 n y C10 C09 A1AIJ sing 3 n y C12 C13 A1AIJ doub 4 n y C15 C16 A1AIJ doub 5 n y C15 C14 A1AIJ sing 6 n y C09 C14 A1AIJ sing 7 n n C09 C08 A1AIJ doub 8 n y C13 C08 A1AIJ sing 9 n y C16 C17 A1AIJ sing 10 n y C14 C23 A1AIJ doub 11 n y C01 C02 A1AIJ sing 12 n n C08 S07 A1AIJ sing 13 n n C17 C24 A1AIJ sing 14 n n C17 C18 A1AIJ doub 15 n y C23 C18 A1AIJ sing 16 n y C23 C22 A1AIJ sing 17 n y O05 C04 A1AIJ doub 18 n n C24 N25 A1AIJ trip 19 n n S07 C02 A1AIJ sing 20 n n C02 C04 A1AIJ sing 21 n n C02 C03 A1AIJ sing 22 n n C18 C19 A1AIJ sing 23 n y C22 C21 A1AIJ doub 24 n y C04 O06 A1AIJ sing 25 n n C19 C20 A1AIJ doub 26 n y C21 C20 A1AIJ sing 27 n y C01 H1 A1AIJ sing 28 n n C01 H2 A1AIJ sing 29 n n C01 H3 A1AIJ sing 30 n n C03 H4 A1AIJ sing 31 n n C03 H5 A1AIJ sing 32 n n C03 H6 A1AIJ sing 33 n n C10 H7 A1AIJ sing 34 n n C12 H8 A1AIJ sing 35 n n C13 H9 A1AIJ sing 36 n n C15 H10 A1AIJ sing 37 n n C16 H11 A1AIJ sing 38 n n C19 H12 A1AIJ sing 39 n n C20 H13 A1AIJ sing 40 n n C21 H14 A1AIJ sing 41 n n C22 H15 A1AIJ sing 42 n n O06 H16 A1AIJ sing 43 n n # _atom_sites.entry_id 9B1I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 601 NAG NAG . C 3 A1AIJ A 1 602 901 A1AIJ VER . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A1AIJ . . . C 3 119.355 123.797 118.311 1 40.57 ? C01 A1AIJ 602 A 1 HETATM 2 C C02 A1AIJ . . . C 3 119.756 123.437 119.739 1 40.57 ? C02 A1AIJ 602 A 1 HETATM 3 C C03 A1AIJ . . . C 3 119.778 124.693 120.601 1 40.57 ? C03 A1AIJ 602 A 1 HETATM 4 C C04 A1AIJ . . . C 3 118.765 122.432 120.325 1 40.57 ? C04 A1AIJ 602 A 1 HETATM 5 C C08 A1AIJ . . . C 3 121.559 121.543 118.32 1 40.57 ? C08 A1AIJ 602 A 1 HETATM 6 C C09 A1AIJ . . . C 3 122.793 121.335 117.727 1 40.57 ? C09 A1AIJ 602 A 1 HETATM 7 C C10 A1AIJ . . . C 3 122.873 120.449 116.667 1 40.57 ? C10 A1AIJ 602 A 1 HETATM 8 C C12 A1AIJ . . . C 3 120.629 119.985 116.783 1 40.57 ? C12 A1AIJ 602 A 1 HETATM 9 C C13 A1AIJ . . . C 3 120.454 120.854 117.846 1 40.57 ? C13 A1AIJ 602 A 1 HETATM 10 C C14 A1AIJ . . . C 3 124.021 122.083 118.232 1 40.57 ? C14 A1AIJ 602 A 1 HETATM 11 C C15 A1AIJ . . . C 3 124.569 123.104 117.467 1 40.57 ? C15 A1AIJ 602 A 1 HETATM 12 C C16 A1AIJ . . . C 3 125.686 123.793 117.922 1 40.57 ? C16 A1AIJ 602 A 1 HETATM 13 C C17 A1AIJ . . . C 3 126.252 123.462 119.143 1 40.57 ? C17 A1AIJ 602 A 1 HETATM 14 C C18 A1AIJ . . . C 3 125.695 122.43 119.919 1 40.57 ? C18 A1AIJ 602 A 1 HETATM 15 C C19 A1AIJ . . . C 3 126.271 122.1 121.155 1 40.57 ? C19 A1AIJ 602 A 1 HETATM 16 C C20 A1AIJ . . . C 3 125.725 121.082 121.923 1 40.57 ? C20 A1AIJ 602 A 1 HETATM 17 C C21 A1AIJ . . . C 3 124.609 120.388 121.472 1 40.57 ? C21 A1AIJ 602 A 1 HETATM 18 C C22 A1AIJ . . . C 3 124.039 120.715 120.252 1 40.57 ? C22 A1AIJ 602 A 1 HETATM 19 C C23 A1AIJ . . . C 3 124.592 121.746 119.471 1 40.57 ? C23 A1AIJ 602 A 1 HETATM 20 C C24 A1AIJ . . . C 3 127.478 124.221 119.639 1 40.57 ? C24 A1AIJ 602 A 1 HETATM 21 N N11 A1AIJ . . . C 3 121.811 119.804 116.23 1 40.57 ? N11 A1AIJ 602 A 1 HETATM 22 N N25 A1AIJ . . . C 3 128.387 124.788 120.003 1 40.57 ? N25 A1AIJ 602 A 1 HETATM 23 O O05 A1AIJ . . . C 3 117.792 122.027 119.638 1 40.57 ? O05 A1AIJ 602 A 1 HETATM 24 O O06 A1AIJ . . . C 3 118.922 122.011 121.502 1 40.57 ? O06 A1AIJ 602 A 1 HETATM 25 S S07 A1AIJ . . . C 3 121.411 122.699 119.714 1 40.57 ? S07 A1AIJ 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #