data_9B1Q # _model_server_result.job_id p3T7VKOgDZBQ4fT4KfNlyA _model_server_result.datetime_utc '2024-11-29 21:51:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 9B1Q # _exptl.entry_id 9B1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B1Q _cell.length_a 142.959 _cell.length_b 154.17 _cell.length_c 88.277 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 175 n n CHA C4D HEM doub 176 n n CHA HHA HEM sing 177 n n CHB C4A HEM sing 178 n n CHB C1B HEM doub 179 n n CHB HHB HEM sing 180 n n CHC C4B HEM sing 181 n n CHC C1C HEM doub 182 n n CHC HHC HEM sing 183 n n CHD C4C HEM doub 184 n n CHD C1D HEM sing 185 n n CHD HHD HEM sing 186 n n C1A C2A HEM doub 187 n y C1A NA HEM sing 188 n y C2A C3A HEM sing 189 n y C2A CAA HEM sing 190 n n C3A C4A HEM doub 191 n y C3A CMA HEM sing 192 n n C4A NA HEM sing 193 n y CMA HMA HEM sing 194 n n CMA HMAA HEM sing 195 n n CMA HMAB HEM sing 196 n n CAA CBA HEM sing 197 n n CAA HAA HEM sing 198 n n CAA HAAA HEM sing 199 n n CBA CGA HEM sing 200 n n CBA HBA HEM sing 201 n n CBA HBAA HEM sing 202 n n CGA O1A HEM doub 203 n n CGA O2A HEM sing 204 n n C1B C2B HEM sing 205 n n C1B NB HEM sing 206 n n C2B C3B HEM doub 207 n n C2B CMB HEM sing 208 n n C3B C4B HEM sing 209 n n C3B CAB HEM sing 210 n n C4B NB HEM doub 211 n n CMB HMB HEM sing 212 n n CMB HMBA HEM sing 213 n n CMB HMBB HEM sing 214 n n CAB CBB HEM doub 215 n n CAB HAB HEM sing 216 n n CBB HBB HEM sing 217 n n CBB HBBA HEM sing 218 n n C1C C2C HEM sing 219 n y C1C NC HEM sing 220 n y C2C C3C HEM doub 221 n y C2C CMC HEM sing 222 n n C3C C4C HEM sing 223 n y C3C CAC HEM sing 224 n n C4C NC HEM sing 225 n y CMC HMC HEM sing 226 n n CMC HMCA HEM sing 227 n n CMC HMCB HEM sing 228 n n CAC CBC HEM doub 229 n n CAC HAC HEM sing 230 n n CBC HBC HEM sing 231 n n CBC HBCA HEM sing 232 n n C1D C2D HEM sing 233 n n C1D ND HEM doub 234 n n C2D C3D HEM doub 235 n n C2D CMD HEM sing 236 n n C3D C4D HEM sing 237 n n C3D CAD HEM sing 238 n n C4D ND HEM sing 239 n n CMD HMD HEM sing 240 n n CMD HMDA HEM sing 241 n n CMD HMDB HEM sing 242 n n CAD CBD HEM sing 243 n n CAD HAD HEM sing 244 n n CAD HADA HEM sing 245 n n CBD CGD HEM sing 246 n n CBD HBD HEM sing 247 n n CBD HBDA HEM sing 248 n n CGD O1D HEM doub 249 n n CGD O2D HEM sing 250 n n O2A H2A HEM sing 251 n n O2D H2D HEM sing 252 n n FE NA HEM sing 253 n n FE NB HEM sing 254 n n FE NC HEM sing 255 n n FE ND HEM sing 256 n n # _atom_sites.entry_id 9B1Q _atom_sites.fract_transf_matrix[1][1] 0.006995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 A1AH8 A 1 402 402 A1AH8 21d . G 4 ZIQ A 1 403 403 ZIQ ZIQ . H 2 HEM B 1 401 401 HEM HEM . I 3 A1AH8 B 1 402 402 A1AH8 21d . J 4 ZIQ B 1 403 403 ZIQ ZIQ . K 2 HEM C 1 401 401 HEM HEM . L 3 A1AH8 C 1 402 402 A1AH8 21d . M 4 ZIQ C 1 403 403 ZIQ ZIQ . N 2 HEM D 1 401 401 HEM HEM . O 3 A1AH8 D 1 402 402 A1AH8 21d . P 4 ZIQ D 1 403 403 ZIQ ZIQ . Q 5 HOH A 1 501 1 HOH HOH . Q 5 HOH A 2 502 3 HOH HOH . Q 5 HOH A 3 503 11 HOH HOH . Q 5 HOH A 4 504 12 HOH HOH . R 5 HOH B 1 501 9 HOH HOH . R 5 HOH B 2 502 10 HOH HOH . R 5 HOH B 3 503 2 HOH HOH . S 5 HOH C 1 501 4 HOH HOH . T 5 HOH D 1 501 5 HOH HOH . T 5 HOH D 2 502 6 HOH HOH . T 5 HOH D 3 503 7 HOH HOH . T 5 HOH D 4 504 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -41.419 21.354 -10.825 1 65.26 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . E 2 -39.068 19.049 -14.368 1 77.88 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . E 2 -34.955 19.475 -11.866 1 63.87 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . E 2 -37.553 20.835 -8.03 1 60.28 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . E 2 -41.135 20.718 -11.996 1 69.34 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . E 2 -42.08 20.481 -13.028 1 74.45 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . E 2 -41.417 19.825 -14.017 1 78.47 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . E 2 -40.061 19.67 -13.614 1 77.33 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . E 2 -42.006 19.356 -15.33 1 82.79 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . E 2 -43.567 20.821 -13.054 1 75.93 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . E 2 -44.412 19.683 -12.397 1 75.36 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . E 2 -44.646 18.452 -13.294 1 75.32 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . E 2 -44.316 17.284 -12.985 1 71.52 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . E 2 -45.188 18.557 -14.406 1 77.66 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . E 2 -37.709 18.995 -13.994 1 71.28 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . E 2 -36.701 18.491 -14.878 1 69.98 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . E 2 -35.507 18.618 -14.199 1 64.78 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . E 2 -35.867 19.215 -12.878 1 63.53 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . E 2 -36.949 17.959 -16.282 1 71.92 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . E 2 -34.132 18.213 -14.592 1 59.54 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . E 2 -33.869 17.39 -15.596 1 59.2 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . E 2 -35.298 19.872 -10.575 1 63.02 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . E 2 -34.429 20.116 -9.49 1 60.67 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . E 2 -35.205 20.507 -8.416 1 59.13 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . E 2 -36.535 20.448 -8.828 1 62.02 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . E 2 -32.922 20.032 -9.496 1 60.65 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . E 2 -34.761 20.74 -7.049 1 56.88 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . E 2 -35.535 20.374 -6.024 1 54.04 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . E 2 -38.77 21.12 -8.555 1 59.38 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . E 2 -39.78 21.735 -7.729 1 59.56 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . E 2 -40.855 21.873 -8.51 1 64.22 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . E 2 -40.485 21.355 -9.812 1 64.12 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . E 2 -39.667 22.126 -6.285 1 56.52 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . E 2 -42.15 22.517 -8.121 1 67.33 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . E 2 -41.93 24.059 -8.327 1 65.91 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . E 2 -43.227 24.866 -8.433 1 69.69 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . E 2 -44.249 24.227 -8.759 1 78.34 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . E 2 -43.364 26.116 -8.22 1 61.45 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . E 2 -39.887 20.22 -12.37 1 71.39 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . E 2 -37.174 19.406 -12.831 1 64.13 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . E 2 -36.55 20.072 -10.134 1 61.91 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . E 2 -39.208 20.913 -9.787 1 62.12 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . E 2 -38.247 20.191 -11.221 1 57.84 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #