data_9B1Q # _model_server_result.job_id s6NssIwKI14kEhxbJj4Kmw _model_server_result.datetime_utc '2024-11-29 21:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 9B1Q # _exptl.entry_id 9B1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.376 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5P)-1-[(imidazolidin-1-yl)methyl]-5-(1H-indol-3-yl)-1H-1,2,3-benzotriazole _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B1Q _cell.length_a 142.959 _cell.length_b 154.17 _cell.length_c 88.277 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 312 A HIS 328 1_555 E FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 B NE2 HIS 312 B HIS 328 1_555 H FE HEM . B HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 C NE2 HIS 312 C HIS 328 1_555 K FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 D NE2 HIS 312 D HIS 328 1_555 N FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C18 H18 N6' _chem_comp.formula_weight 318.376 _chem_comp.id A1AH8 _chem_comp.mon_nstd_flag . _chem_comp.name (5P)-1-[(imidazolidin-1-yl)methyl]-5-(1H-indol-3-yl)-1H-1,2,3-benzotriazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N3 A1AH8 sing 1 n n C12 N4 A1AH8 sing 2 n n C13 N4 A1AH8 sing 3 n n C13 C14 A1AH8 sing 4 n n N2 N3 A1AH8 sing 5 n y N2 N1 A1AH8 doub 6 n y N3 C9 A1AH8 sing 7 n y N4 C15 A1AH8 sing 8 n n N1 C10 A1AH8 sing 9 n y C14 N5 A1AH8 sing 10 n n C15 N5 A1AH8 sing 11 n n C9 C10 A1AH8 doub 12 n y C9 C8 A1AH8 sing 13 n y C10 C11 A1AH8 sing 14 n y C8 C7 A1AH8 doub 15 n y C11 C6 A1AH8 doub 16 n y C7 C6 A1AH8 sing 17 n y C6 C5 A1AH8 sing 18 n n C5 C16 A1AH8 doub 19 n y C5 C4 A1AH8 sing 20 n y C16 N6 A1AH8 sing 21 n y C4 C3 A1AH8 sing 22 n y C4 C17 A1AH8 doub 23 n y C3 C2 A1AH8 doub 24 n y N6 C17 A1AH8 sing 25 n y C17 C18 A1AH8 sing 26 n y C2 C1 A1AH8 sing 27 n y C18 C1 A1AH8 doub 28 n y C1 H1 A1AH8 sing 29 n n C2 H2 A1AH8 sing 30 n n C3 H3 A1AH8 sing 31 n n C7 H4 A1AH8 sing 32 n n C8 H5 A1AH8 sing 33 n n C11 H6 A1AH8 sing 34 n n C12 H7 A1AH8 sing 35 n n C12 H8 A1AH8 sing 36 n n C13 H10 A1AH8 sing 37 n n C13 H11 A1AH8 sing 38 n n C14 H12 A1AH8 sing 39 n n C14 H13 A1AH8 sing 40 n n N5 H14 A1AH8 sing 41 n n C15 H16 A1AH8 sing 42 n n C15 H17 A1AH8 sing 43 n n C16 H18 A1AH8 sing 44 n n N6 H19 A1AH8 sing 45 n n C18 H20 A1AH8 sing 46 n n # _atom_sites.entry_id 9B1Q _atom_sites.fract_transf_matrix[1][1] 0.006995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 401 401 HEM HEM . F 3 A1AH8 A 1 402 402 A1AH8 21d . G 4 ZIQ A 1 403 403 ZIQ ZIQ . H 2 HEM B 1 401 401 HEM HEM . I 3 A1AH8 B 1 402 402 A1AH8 21d . J 4 ZIQ B 1 403 403 ZIQ ZIQ . K 2 HEM C 1 401 401 HEM HEM . L 3 A1AH8 C 1 402 402 A1AH8 21d . M 4 ZIQ C 1 403 403 ZIQ ZIQ . N 2 HEM D 1 401 401 HEM HEM . O 3 A1AH8 D 1 402 402 A1AH8 21d . P 4 ZIQ D 1 403 403 ZIQ ZIQ . Q 5 HOH A 1 501 1 HOH HOH . Q 5 HOH A 2 502 3 HOH HOH . Q 5 HOH A 3 503 11 HOH HOH . Q 5 HOH A 4 504 12 HOH HOH . R 5 HOH B 1 501 9 HOH HOH . R 5 HOH B 2 502 10 HOH HOH . R 5 HOH B 3 503 2 HOH HOH . S 5 HOH C 1 501 4 HOH HOH . T 5 HOH D 1 501 5 HOH HOH . T 5 HOH D 2 502 6 HOH HOH . T 5 HOH D 3 503 7 HOH HOH . T 5 HOH D 4 504 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AH8 . . . I 3 -17.507 16.689 11.345 1 61.52 ? C1 A1AH8 402 B 1 HETATM 2 C C2 A1AH8 . . . I 3 -17.015 16.744 12.66 1 65.19 ? C2 A1AH8 402 B 1 HETATM 3 C C3 A1AH8 . . . I 3 -15.938 17.545 12.992 1 64.53 ? C3 A1AH8 402 B 1 HETATM 4 C C4 A1AH8 . . . I 3 -15.317 18.289 11.975 1 60.92 ? C4 A1AH8 402 B 1 HETATM 5 C C5 A1AH8 . . . I 3 -14.192 19.193 11.917 1 58.84 ? C5 A1AH8 402 B 1 HETATM 6 C C6 A1AH8 . . . I 3 -13.31 19.655 12.996 1 62.15 ? C6 A1AH8 402 B 1 HETATM 7 C C7 A1AH8 . . . I 3 -11.928 19.614 12.819 1 68.19 ? C7 A1AH8 402 B 1 HETATM 8 C C8 A1AH8 . . . I 3 -11.042 20.026 13.791 1 72.89 ? C8 A1AH8 402 B 1 HETATM 9 C C9 A1AH8 . . . I 3 -11.572 20.501 14.977 1 76 ? C9 A1AH8 402 B 1 HETATM 10 C C10 A1AH8 . . . I 3 -12.945 20.543 15.187 1 72.15 ? C10 A1AH8 402 B 1 HETATM 11 C C11 A1AH8 . . . I 3 -13.816 20.114 14.171 1 64.44 ? C11 A1AH8 402 B 1 HETATM 12 N N1 A1AH8 . . . I 3 -13.174 21.059 16.444 1 79.2 ? N1 A1AH8 402 B 1 HETATM 13 N N2 A1AH8 . . . I 3 -12.017 21.308 16.997 1 84.01 ? N2 A1AH8 402 B 1 HETATM 14 N N3 A1AH8 . . . I 3 -11.026 20.971 16.134 1 85.52 ? N3 A1AH8 402 B 1 HETATM 15 C C12 A1AH8 . . . I 3 -9.601 21.168 16.477 1 90.99 ? C12 A1AH8 402 B 1 HETATM 16 N N4 A1AH8 . . . I 3 -9.017 20.571 17.69 1 98.21 ? N4 A1AH8 402 B 1 HETATM 17 C C13 A1AH8 . . . I 3 -8.191 21.505 18.478 1 101.23 ? C13 A1AH8 402 B 1 HETATM 18 C C14 A1AH8 . . . I 3 -8.101 20.905 19.871 1 105.14 ? C14 A1AH8 402 B 1 HETATM 19 N N5 A1AH8 . . . I 3 -9.172 19.908 19.903 1 106.31 ? N5 A1AH8 402 B 1 HETATM 20 C C15 A1AH8 . . . I 3 -9.966 20.029 18.67 1 102.87 ? C15 A1AH8 402 B 1 HETATM 21 C C16 A1AH8 . . . I 3 -14.082 19.577 10.607 1 56.15 ? C16 A1AH8 402 B 1 HETATM 22 N N6 A1AH8 . . . I 3 -15.064 18.999 9.861 1 55.06 ? N6 A1AH8 402 B 1 HETATM 23 C C17 A1AH8 . . . I 3 -15.835 18.198 10.661 1 56.58 ? C17 A1AH8 402 B 1 HETATM 24 C C18 A1AH8 . . . I 3 -16.927 17.408 10.328 1 56.06 ? C18 A1AH8 402 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #