data_9B2E # _model_server_result.job_id zrk7vljaeDQuFh3IzQedKg _model_server_result.datetime_utc '2025-02-23 13:18:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 9B2E # _exptl.entry_id 9B2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 183.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-8-sulfanyl-1,9-dihydro-6H-purin-6-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B2E _cell.length_a 81.386 _cell.length_b 81.386 _cell.length_c 74.862 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 81.386 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 40.693 40.693 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -40.693 40.693 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C5 H5 N5 O S' _chem_comp.formula_weight 183.191 _chem_comp.id B55 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-8-sulfanyl-1,9-dihydro-6H-purin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-amino-8-mercapto-1H-purin-6(9H)-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C5 B55 doub 70 n n C5 C2 B55 sing 71 n n C5 N4 B55 sing 72 n n C2 N1 B55 sing 73 n y C2 C3 B55 doub 74 n y N1 C1 B55 doub 75 n y N4 C4 B55 sing 76 n n C4 N3 B55 sing 77 n n C4 N2 B55 doub 78 n n N2 C3 B55 sing 79 n n C3 N5 B55 sing 80 n y N5 C1 B55 sing 81 n y C1 S1 B55 sing 82 n n N4 HN4 B55 sing 83 n n N3 HN3 B55 sing 84 n n N3 HN3A B55 sing 85 n n N5 HN5 B55 sing 86 n n S1 HS1 B55 sing 87 n n # _atom_sites.entry_id 9B2E _atom_sites.fract_transf_matrix[1][1] 0.012287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B55 A 1 201 201 B55 8MG . D 2 B55 B 1 201 201 B55 8MG . E 3 HOH A 1 301 185 HOH HOH . E 3 HOH A 2 302 68 HOH HOH . E 3 HOH A 3 303 20 HOH HOH . E 3 HOH A 4 304 141 HOH HOH . E 3 HOH A 5 305 44 HOH HOH . E 3 HOH A 6 306 234 HOH HOH . E 3 HOH A 7 307 86 HOH HOH . E 3 HOH A 8 308 147 HOH HOH . E 3 HOH A 9 309 39 HOH HOH . E 3 HOH A 10 310 110 HOH HOH . E 3 HOH A 11 311 243 HOH HOH . E 3 HOH A 12 312 92 HOH HOH . E 3 HOH A 13 313 7 HOH HOH . E 3 HOH A 14 314 146 HOH HOH . E 3 HOH A 15 315 201 HOH HOH . E 3 HOH A 16 316 42 HOH HOH . E 3 HOH A 17 317 55 HOH HOH . E 3 HOH A 18 318 19 HOH HOH . E 3 HOH A 19 319 29 HOH HOH . E 3 HOH A 20 320 89 HOH HOH . E 3 HOH A 21 321 239 HOH HOH . E 3 HOH A 22 322 143 HOH HOH . E 3 HOH A 23 323 214 HOH HOH . E 3 HOH A 24 324 117 HOH HOH . E 3 HOH A 25 325 11 HOH HOH . E 3 HOH A 26 326 165 HOH HOH . E 3 HOH A 27 327 77 HOH HOH . E 3 HOH A 28 328 238 HOH HOH . E 3 HOH A 29 329 112 HOH HOH . E 3 HOH A 30 330 241 HOH HOH . E 3 HOH A 31 331 18 HOH HOH . E 3 HOH A 32 332 102 HOH HOH . E 3 HOH A 33 333 34 HOH HOH . E 3 HOH A 34 334 135 HOH HOH . E 3 HOH A 35 335 10 HOH HOH . E 3 HOH A 36 336 82 HOH HOH . E 3 HOH A 37 337 136 HOH HOH . E 3 HOH A 38 338 9 HOH HOH . E 3 HOH A 39 339 64 HOH HOH . E 3 HOH A 40 340 176 HOH HOH . E 3 HOH A 41 341 13 HOH HOH . E 3 HOH A 42 342 125 HOH HOH . E 3 HOH A 43 343 132 HOH HOH . E 3 HOH A 44 344 137 HOH HOH . E 3 HOH A 45 345 271 HOH HOH . E 3 HOH A 46 346 208 HOH HOH . E 3 HOH A 47 347 49 HOH HOH . E 3 HOH A 48 348 61 HOH HOH . E 3 HOH A 49 349 73 HOH HOH . E 3 HOH A 50 350 70 HOH HOH . E 3 HOH A 51 351 14 HOH HOH . E 3 HOH A 52 352 53 HOH HOH . E 3 HOH A 53 353 57 HOH HOH . E 3 HOH A 54 354 159 HOH HOH . E 3 HOH A 55 355 67 HOH HOH . E 3 HOH A 56 356 221 HOH HOH . E 3 HOH A 57 357 254 HOH HOH . E 3 HOH A 58 358 226 HOH HOH . E 3 HOH A 59 359 27 HOH HOH . E 3 HOH A 60 360 123 HOH HOH . E 3 HOH A 61 361 229 HOH HOH . E 3 HOH A 62 362 40 HOH HOH . E 3 HOH A 63 363 45 HOH HOH . E 3 HOH A 64 364 31 HOH HOH . E 3 HOH A 65 365 63 HOH HOH . E 3 HOH A 66 366 114 HOH HOH . E 3 HOH A 67 367 2 HOH HOH . E 3 HOH A 68 368 104 HOH HOH . E 3 HOH A 69 369 116 HOH HOH . E 3 HOH A 70 370 81 HOH HOH . E 3 HOH A 71 371 93 HOH HOH . E 3 HOH A 72 372 121 HOH HOH . E 3 HOH A 73 373 119 HOH HOH . E 3 HOH A 74 374 218 HOH HOH . E 3 HOH A 75 375 222 HOH HOH . E 3 HOH A 76 376 169 HOH HOH . E 3 HOH A 77 377 202 HOH HOH . E 3 HOH A 78 378 97 HOH HOH . E 3 HOH A 79 379 246 HOH HOH . E 3 HOH A 80 380 181 HOH HOH . E 3 HOH A 81 381 192 HOH HOH . E 3 HOH A 82 382 252 HOH HOH . E 3 HOH A 83 383 225 HOH HOH . E 3 HOH A 84 384 253 HOH HOH . E 3 HOH A 85 385 90 HOH HOH . E 3 HOH A 86 386 41 HOH HOH . E 3 HOH A 87 387 228 HOH HOH . E 3 HOH A 88 388 152 HOH HOH . E 3 HOH A 89 389 256 HOH HOH . E 3 HOH A 90 390 187 HOH HOH . E 3 HOH A 91 391 273 HOH HOH . E 3 HOH A 92 392 183 HOH HOH . E 3 HOH A 93 393 155 HOH HOH . E 3 HOH A 94 394 3 HOH HOH . E 3 HOH A 95 395 134 HOH HOH . E 3 HOH A 96 396 6 HOH HOH . E 3 HOH A 97 397 160 HOH HOH . E 3 HOH A 98 398 217 HOH HOH . E 3 HOH A 99 399 182 HOH HOH . E 3 HOH A 100 400 244 HOH HOH . E 3 HOH A 101 401 191 HOH HOH . E 3 HOH A 102 402 269 HOH HOH . E 3 HOH A 103 403 251 HOH HOH . E 3 HOH A 104 404 174 HOH HOH . E 3 HOH A 105 405 280 HOH HOH . E 3 HOH A 106 406 205 HOH HOH . E 3 HOH A 107 407 28 HOH HOH . E 3 HOH A 108 408 140 HOH HOH . E 3 HOH A 109 409 203 HOH HOH . E 3 HOH A 110 410 98 HOH HOH . E 3 HOH A 111 411 145 HOH HOH . E 3 HOH A 112 412 242 HOH HOH . E 3 HOH A 113 413 83 HOH HOH . E 3 HOH A 114 414 78 HOH HOH . E 3 HOH A 115 415 247 HOH HOH . E 3 HOH A 116 416 236 HOH HOH . E 3 HOH A 117 417 120 HOH HOH . E 3 HOH A 118 418 139 HOH HOH . E 3 HOH A 119 419 215 HOH HOH . E 3 HOH A 120 420 186 HOH HOH . E 3 HOH A 121 421 209 HOH HOH . E 3 HOH A 122 422 130 HOH HOH . E 3 HOH A 123 423 164 HOH HOH . E 3 HOH A 124 424 157 HOH HOH . E 3 HOH A 125 425 240 HOH HOH . E 3 HOH A 126 426 166 HOH HOH . E 3 HOH A 127 427 118 HOH HOH . E 3 HOH A 128 428 100 HOH HOH . E 3 HOH A 129 429 178 HOH HOH . E 3 HOH A 130 430 219 HOH HOH . E 3 HOH A 131 431 268 HOH HOH . E 3 HOH A 132 432 171 HOH HOH . E 3 HOH A 133 433 266 HOH HOH . E 3 HOH A 134 434 281 HOH HOH . E 3 HOH A 135 435 276 HOH HOH . F 3 HOH B 1 301 257 HOH HOH . F 3 HOH B 2 302 259 HOH HOH . F 3 HOH B 3 303 270 HOH HOH . F 3 HOH B 4 304 122 HOH HOH . F 3 HOH B 5 305 282 HOH HOH . F 3 HOH B 6 306 262 HOH HOH . F 3 HOH B 7 307 261 HOH HOH . F 3 HOH B 8 308 33 HOH HOH . F 3 HOH B 9 309 263 HOH HOH . F 3 HOH B 10 310 25 HOH HOH . F 3 HOH B 11 311 107 HOH HOH . F 3 HOH B 12 312 154 HOH HOH . F 3 HOH B 13 313 235 HOH HOH . F 3 HOH B 14 314 56 HOH HOH . F 3 HOH B 15 315 60 HOH HOH . F 3 HOH B 16 316 66 HOH HOH . F 3 HOH B 17 317 74 HOH HOH . F 3 HOH B 18 318 38 HOH HOH . F 3 HOH B 19 319 101 HOH HOH . F 3 HOH B 20 320 198 HOH HOH . F 3 HOH B 21 321 22 HOH HOH . F 3 HOH B 22 322 80 HOH HOH . F 3 HOH B 23 323 50 HOH HOH . F 3 HOH B 24 324 15 HOH HOH . F 3 HOH B 25 325 88 HOH HOH . F 3 HOH B 26 326 23 HOH HOH . F 3 HOH B 27 327 21 HOH HOH . F 3 HOH B 28 328 204 HOH HOH . F 3 HOH B 29 329 26 HOH HOH . F 3 HOH B 30 330 24 HOH HOH . F 3 HOH B 31 331 211 HOH HOH . F 3 HOH B 32 332 94 HOH HOH . F 3 HOH B 33 333 184 HOH HOH . F 3 HOH B 34 334 30 HOH HOH . F 3 HOH B 35 335 5 HOH HOH . F 3 HOH B 36 336 4 HOH HOH . F 3 HOH B 37 337 72 HOH HOH . F 3 HOH B 38 338 113 HOH HOH . F 3 HOH B 39 339 148 HOH HOH . F 3 HOH B 40 340 277 HOH HOH . F 3 HOH B 41 341 79 HOH HOH . F 3 HOH B 42 342 54 HOH HOH . F 3 HOH B 43 343 213 HOH HOH . F 3 HOH B 44 344 96 HOH HOH . F 3 HOH B 45 345 46 HOH HOH . F 3 HOH B 46 346 126 HOH HOH . F 3 HOH B 47 347 105 HOH HOH . F 3 HOH B 48 348 95 HOH HOH . F 3 HOH B 49 349 87 HOH HOH . F 3 HOH B 50 350 129 HOH HOH . F 3 HOH B 51 351 58 HOH HOH . F 3 HOH B 52 352 103 HOH HOH . F 3 HOH B 53 353 1 HOH HOH . F 3 HOH B 54 354 127 HOH HOH . F 3 HOH B 55 355 180 HOH HOH . F 3 HOH B 56 356 35 HOH HOH . F 3 HOH B 57 357 158 HOH HOH . F 3 HOH B 58 358 128 HOH HOH . F 3 HOH B 59 359 245 HOH HOH . F 3 HOH B 60 360 144 HOH HOH . F 3 HOH B 61 361 51 HOH HOH . F 3 HOH B 62 362 220 HOH HOH . F 3 HOH B 63 363 195 HOH HOH . F 3 HOH B 64 364 43 HOH HOH . F 3 HOH B 65 365 48 HOH HOH . F 3 HOH B 66 366 230 HOH HOH . F 3 HOH B 67 367 71 HOH HOH . F 3 HOH B 68 368 212 HOH HOH . F 3 HOH B 69 369 16 HOH HOH . F 3 HOH B 70 370 161 HOH HOH . F 3 HOH B 71 371 250 HOH HOH . F 3 HOH B 72 372 47 HOH HOH . F 3 HOH B 73 373 167 HOH HOH . F 3 HOH B 74 374 177 HOH HOH . F 3 HOH B 75 375 76 HOH HOH . F 3 HOH B 76 376 36 HOH HOH . F 3 HOH B 77 377 275 HOH HOH . F 3 HOH B 78 378 115 HOH HOH . F 3 HOH B 79 379 99 HOH HOH . F 3 HOH B 80 380 199 HOH HOH . F 3 HOH B 81 381 37 HOH HOH . F 3 HOH B 82 382 175 HOH HOH . F 3 HOH B 83 383 206 HOH HOH . F 3 HOH B 84 384 163 HOH HOH . F 3 HOH B 85 385 52 HOH HOH . F 3 HOH B 86 386 138 HOH HOH . F 3 HOH B 87 387 142 HOH HOH . F 3 HOH B 88 388 153 HOH HOH . F 3 HOH B 89 389 216 HOH HOH . F 3 HOH B 90 390 149 HOH HOH . F 3 HOH B 91 391 227 HOH HOH . F 3 HOH B 92 392 12 HOH HOH . F 3 HOH B 93 393 179 HOH HOH . F 3 HOH B 94 394 264 HOH HOH . F 3 HOH B 95 395 274 HOH HOH . F 3 HOH B 96 396 91 HOH HOH . F 3 HOH B 97 397 32 HOH HOH . F 3 HOH B 98 398 189 HOH HOH . F 3 HOH B 99 399 108 HOH HOH . F 3 HOH B 100 400 223 HOH HOH . F 3 HOH B 101 401 150 HOH HOH . F 3 HOH B 102 402 133 HOH HOH . F 3 HOH B 103 403 170 HOH HOH . F 3 HOH B 104 404 196 HOH HOH . F 3 HOH B 105 405 248 HOH HOH . F 3 HOH B 106 406 75 HOH HOH . F 3 HOH B 107 407 8 HOH HOH . F 3 HOH B 108 408 65 HOH HOH . F 3 HOH B 109 409 231 HOH HOH . F 3 HOH B 110 410 255 HOH HOH . F 3 HOH B 111 411 279 HOH HOH . F 3 HOH B 112 412 197 HOH HOH . F 3 HOH B 113 413 111 HOH HOH . F 3 HOH B 114 414 188 HOH HOH . F 3 HOH B 115 415 172 HOH HOH . F 3 HOH B 116 416 210 HOH HOH . F 3 HOH B 117 417 265 HOH HOH . F 3 HOH B 118 418 62 HOH HOH . F 3 HOH B 119 419 233 HOH HOH . F 3 HOH B 120 420 106 HOH HOH . F 3 HOH B 121 421 17 HOH HOH . F 3 HOH B 122 422 267 HOH HOH . F 3 HOH B 123 423 278 HOH HOH . F 3 HOH B 124 424 151 HOH HOH . F 3 HOH B 125 425 124 HOH HOH . F 3 HOH B 126 426 194 HOH HOH . F 3 HOH B 127 427 193 HOH HOH . F 3 HOH B 128 428 207 HOH HOH . F 3 HOH B 129 429 84 HOH HOH . F 3 HOH B 130 430 59 HOH HOH . F 3 HOH B 131 431 237 HOH HOH . F 3 HOH B 132 432 232 HOH HOH . F 3 HOH B 133 433 272 HOH HOH . F 3 HOH B 134 434 131 HOH HOH . F 3 HOH B 135 435 258 HOH HOH . F 3 HOH B 136 436 190 HOH HOH . F 3 HOH B 137 437 109 HOH HOH . F 3 HOH B 138 438 173 HOH HOH . F 3 HOH B 139 439 156 HOH HOH . F 3 HOH B 140 440 168 HOH HOH . F 3 HOH B 141 441 69 HOH HOH . F 3 HOH B 142 442 162 HOH HOH . F 3 HOH B 143 443 85 HOH HOH . F 3 HOH B 144 444 260 HOH HOH . F 3 HOH B 145 445 200 HOH HOH . F 3 HOH B 146 446 249 HOH HOH . F 3 HOH B 147 447 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 B55 . . . C 2 23.321 42.108 35.501 1 21.44 ? O1 B55 201 A 1 HETATM 2 C C5 B55 . . . C 2 23.205 40.793 35.936 1 20.81 ? C5 B55 201 A 1 HETATM 3 C C2 B55 . . . C 2 23.909 39.747 35.243 1 22.67 ? C2 B55 201 A 1 HETATM 4 N N1 B55 . . . C 2 24.714 39.767 34.201 1 21.39 ? N1 B55 201 A 1 HETATM 5 N N4 B55 . . . C 2 22.429 40.486 37.01 1 19.78 ? N4 B55 201 A 1 HETATM 6 C C4 B55 . . . C 2 22.3 39.134 37.432 1 16.35 ? C4 B55 201 A 1 HETATM 7 N N3 B55 . . . C 2 21.479 38.807 38.562 1 18.28 ? N3 B55 201 A 1 HETATM 8 N N2 B55 . . . C 2 22.98 38.13 36.771 1 19.57 ? N2 B55 201 A 1 HETATM 9 C C3 B55 . . . C 2 23.769 38.45 35.675 1 20.81 ? C3 B55 201 A 1 HETATM 10 N N5 B55 . . . C 2 24.484 37.697 34.919 1 18.95 ? N5 B55 201 A 1 HETATM 11 C C1 B55 . . . C 2 25.067 38.492 34.028 1 21.92 ? C1 B55 201 A 1 HETATM 12 S S1 B55 . . . C 2 26.188 37.904 32.752 1 23.54 ? S1 B55 201 A 1 HETATM 13 H HN4 B55 . . . C 2 21.932 41.213 37.495 1 23.74 ? HN4 B55 201 A 1 HETATM 14 H HN3 B55 . . . C 2 21.789 39.034 39.491 1 21.93 ? HN3 B55 201 A 1 HETATM 15 H HN3A B55 . . . C 2 20.611 38.319 38.428 1 21.93 ? HN3A B55 201 A 1 HETATM 16 H HS1 B55 . . . C 2 27.359 37.596 33.299 1 28.25 ? HS1 B55 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #