data_9B2H # _model_server_result.job_id ufK8TURDktJ73T65un-mTg _model_server_result.datetime_utc '2024-12-21 12:33:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":205}' # _entry.id 9B2H # _exptl.entry_id 9B2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B2H _cell.length_a 58.576 _cell.length_b 85.877 _cell.length_c 46.312 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 C NA NA . A NA 501 1_555 M O HOH . A HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 C NA NA . A NA 501 1_555 M O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 C NA NA . A NA 501 1_555 M O HOH . A HOH 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc5 C NA NA . A NA 501 1_555 M O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc6 C NA NA . A NA 501 1_555 M O HOH . A HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc7 B O ASP 60 B ASP 60 1_555 I NA NA . B NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 I NA NA . B NA 202 1_555 N O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc9 I NA NA . B NA 202 1_555 N O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 I NA NA . B NA 202 1_555 N O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 222 n n C1 C2 GOL sing 223 n n C1 H11 GOL sing 224 n n C1 H12 GOL sing 225 n n O1 HO1 GOL sing 226 n n C2 O2 GOL sing 227 n n C2 C3 GOL sing 228 n n C2 H2 GOL sing 229 n n O2 HO2 GOL sing 230 n n C3 O3 GOL sing 231 n n C3 H31 GOL sing 232 n n C3 H32 GOL sing 233 n n O3 HO3 GOL sing 234 n n # _atom_sites.entry_id 9B2H _atom_sites.fract_transf_matrix[1][1] 0.017072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 501 NA NA . D 3 CL A 1 502 511 CL CL . E 3 CL A 1 503 514 CL CL . F 4 GOL A 1 504 521 GOL GOL . G 5 FMT A 1 505 531 FMT FMT . H 6 A1AIH B 1 201 201 A1AIH G7Y . I 2 NA B 1 202 502 NA NA . J 3 CL B 1 203 512 CL CL . K 3 CL B 1 204 513 CL CL . L 4 GOL B 1 205 522 GOL GOL . M 7 HOH A 1 601 1164 HOH HOH . M 7 HOH A 2 602 1199 HOH HOH . M 7 HOH A 3 603 1146 HOH HOH . M 7 HOH A 4 604 1071 HOH HOH . M 7 HOH A 5 605 1167 HOH HOH . M 7 HOH A 6 606 1213 HOH HOH . M 7 HOH A 7 607 1064 HOH HOH . M 7 HOH A 8 608 1209 HOH HOH . M 7 HOH A 9 609 1142 HOH HOH . M 7 HOH A 10 610 1077 HOH HOH . M 7 HOH A 11 611 1112 HOH HOH . M 7 HOH A 12 612 1055 HOH HOH . M 7 HOH A 13 613 1151 HOH HOH . M 7 HOH A 14 614 1165 HOH HOH . M 7 HOH A 15 615 1001 HOH HOH . M 7 HOH A 16 616 1047 HOH HOH . M 7 HOH A 17 617 1217 HOH HOH . M 7 HOH A 18 618 1111 HOH HOH . M 7 HOH A 19 619 1155 HOH HOH . M 7 HOH A 20 620 1109 HOH HOH . M 7 HOH A 21 621 1013 HOH HOH . M 7 HOH A 22 622 1245 HOH HOH . M 7 HOH A 23 623 1060 HOH HOH . M 7 HOH A 24 624 1046 HOH HOH . M 7 HOH A 25 625 1017 HOH HOH . M 7 HOH A 26 626 1095 HOH HOH . M 7 HOH A 27 627 1083 HOH HOH . M 7 HOH A 28 628 1061 HOH HOH . M 7 HOH A 29 629 1003 HOH HOH . M 7 HOH A 30 630 1012 HOH HOH . M 7 HOH A 31 631 1153 HOH HOH . M 7 HOH A 32 632 1244 HOH HOH . M 7 HOH A 33 633 1117 HOH HOH . M 7 HOH A 34 634 1040 HOH HOH . M 7 HOH A 35 635 1158 HOH HOH . M 7 HOH A 36 636 1004 HOH HOH . M 7 HOH A 37 637 1014 HOH HOH . M 7 HOH A 38 638 1024 HOH HOH . M 7 HOH A 39 639 1141 HOH HOH . M 7 HOH A 40 640 1011 HOH HOH . M 7 HOH A 41 641 1038 HOH HOH . M 7 HOH A 42 642 1022 HOH HOH . M 7 HOH A 43 643 1216 HOH HOH . M 7 HOH A 44 644 1007 HOH HOH . M 7 HOH A 45 645 1062 HOH HOH . M 7 HOH A 46 646 1148 HOH HOH . M 7 HOH A 47 647 1101 HOH HOH . M 7 HOH A 48 648 1224 HOH HOH . M 7 HOH A 49 649 1220 HOH HOH . M 7 HOH A 50 650 1210 HOH HOH . M 7 HOH A 51 651 1219 HOH HOH . M 7 HOH A 52 652 1162 HOH HOH . M 7 HOH A 53 653 1074 HOH HOH . M 7 HOH A 54 654 1005 HOH HOH . M 7 HOH A 55 655 1143 HOH HOH . M 7 HOH A 56 656 1087 HOH HOH . M 7 HOH A 57 657 1149 HOH HOH . M 7 HOH A 58 658 1068 HOH HOH . M 7 HOH A 59 659 1208 HOH HOH . M 7 HOH A 60 660 1231 HOH HOH . M 7 HOH A 61 661 1147 HOH HOH . M 7 HOH A 62 662 1070 HOH HOH . M 7 HOH A 63 663 1212 HOH HOH . M 7 HOH A 64 664 1144 HOH HOH . M 7 HOH A 65 665 1232 HOH HOH . M 7 HOH A 66 666 1088 HOH HOH . M 7 HOH A 67 667 1031 HOH HOH . M 7 HOH A 68 668 1123 HOH HOH . M 7 HOH A 69 669 1175 HOH HOH . M 7 HOH A 70 670 1198 HOH HOH . M 7 HOH A 71 671 1187 HOH HOH . M 7 HOH A 72 672 1016 HOH HOH . M 7 HOH A 73 673 1042 HOH HOH . M 7 HOH A 74 674 1121 HOH HOH . M 7 HOH A 75 675 1168 HOH HOH . M 7 HOH A 76 676 1182 HOH HOH . M 7 HOH A 77 677 1036 HOH HOH . M 7 HOH A 78 678 1006 HOH HOH . M 7 HOH A 79 679 1019 HOH HOH . M 7 HOH A 80 680 1102 HOH HOH . M 7 HOH A 81 681 1052 HOH HOH . M 7 HOH A 82 682 1218 HOH HOH . M 7 HOH A 83 683 1124 HOH HOH . M 7 HOH A 84 684 1188 HOH HOH . M 7 HOH A 85 685 1137 HOH HOH . M 7 HOH A 86 686 1089 HOH HOH . M 7 HOH A 87 687 1227 HOH HOH . M 7 HOH A 88 688 1171 HOH HOH . M 7 HOH A 89 689 1122 HOH HOH . M 7 HOH A 90 690 1094 HOH HOH . M 7 HOH A 91 691 1096 HOH HOH . M 7 HOH A 92 692 1138 HOH HOH . M 7 HOH A 93 693 1197 HOH HOH . M 7 HOH A 94 694 1186 HOH HOH . M 7 HOH A 95 695 1192 HOH HOH . M 7 HOH A 96 696 1215 HOH HOH . M 7 HOH A 97 697 1081 HOH HOH . M 7 HOH A 98 698 1225 HOH HOH . M 7 HOH A 99 699 1134 HOH HOH . M 7 HOH A 100 700 1207 HOH HOH . M 7 HOH A 101 701 1120 HOH HOH . M 7 HOH A 102 702 1093 HOH HOH . M 7 HOH A 103 703 1169 HOH HOH . M 7 HOH A 104 704 1221 HOH HOH . N 7 HOH B 1 301 1107 HOH HOH . N 7 HOH B 2 302 1106 HOH HOH . N 7 HOH B 3 303 1222 HOH HOH . N 7 HOH B 4 304 1132 HOH HOH . N 7 HOH B 5 305 1097 HOH HOH . N 7 HOH B 6 306 1156 HOH HOH . N 7 HOH B 7 307 1139 HOH HOH . N 7 HOH B 8 308 1002 HOH HOH . N 7 HOH B 9 309 1029 HOH HOH . N 7 HOH B 10 310 1067 HOH HOH . N 7 HOH B 11 311 1177 HOH HOH . N 7 HOH B 12 312 1026 HOH HOH . N 7 HOH B 13 313 1027 HOH HOH . N 7 HOH B 14 314 1103 HOH HOH . N 7 HOH B 15 315 1051 HOH HOH . N 7 HOH B 16 316 1045 HOH HOH . N 7 HOH B 17 317 1033 HOH HOH . N 7 HOH B 18 318 1075 HOH HOH . N 7 HOH B 19 319 1246 HOH HOH . N 7 HOH B 20 320 1048 HOH HOH . N 7 HOH B 21 321 1159 HOH HOH . N 7 HOH B 22 322 1043 HOH HOH . N 7 HOH B 23 323 1205 HOH HOH . N 7 HOH B 24 324 1235 HOH HOH . N 7 HOH B 25 325 1100 HOH HOH . N 7 HOH B 26 326 1082 HOH HOH . N 7 HOH B 27 327 1200 HOH HOH . N 7 HOH B 28 328 1057 HOH HOH . N 7 HOH B 29 329 1025 HOH HOH . N 7 HOH B 30 330 1015 HOH HOH . N 7 HOH B 31 331 1044 HOH HOH . N 7 HOH B 32 332 1010 HOH HOH . N 7 HOH B 33 333 1160 HOH HOH . N 7 HOH B 34 334 1039 HOH HOH . N 7 HOH B 35 335 1035 HOH HOH . N 7 HOH B 36 336 1090 HOH HOH . N 7 HOH B 37 337 1050 HOH HOH . N 7 HOH B 38 338 1065 HOH HOH . N 7 HOH B 39 339 1110 HOH HOH . N 7 HOH B 40 340 1063 HOH HOH . N 7 HOH B 41 341 1157 HOH HOH . N 7 HOH B 42 342 1076 HOH HOH . N 7 HOH B 43 343 1078 HOH HOH . N 7 HOH B 44 344 1059 HOH HOH . N 7 HOH B 45 345 1073 HOH HOH . N 7 HOH B 46 346 1118 HOH HOH . N 7 HOH B 47 347 1058 HOH HOH . N 7 HOH B 48 348 1018 HOH HOH . N 7 HOH B 49 349 1223 HOH HOH . N 7 HOH B 50 350 1189 HOH HOH . N 7 HOH B 51 351 1023 HOH HOH . N 7 HOH B 52 352 1154 HOH HOH . N 7 HOH B 53 353 1009 HOH HOH . N 7 HOH B 54 354 1179 HOH HOH . N 7 HOH B 55 355 1086 HOH HOH . N 7 HOH B 56 356 1184 HOH HOH . N 7 HOH B 57 357 1226 HOH HOH . N 7 HOH B 58 358 1079 HOH HOH . N 7 HOH B 59 359 1161 HOH HOH . N 7 HOH B 60 360 1104 HOH HOH . N 7 HOH B 61 361 1041 HOH HOH . N 7 HOH B 62 362 1069 HOH HOH . N 7 HOH B 63 363 1202 HOH HOH . N 7 HOH B 64 364 1240 HOH HOH . N 7 HOH B 65 365 1114 HOH HOH . N 7 HOH B 66 366 1211 HOH HOH . N 7 HOH B 67 367 1098 HOH HOH . N 7 HOH B 68 368 1037 HOH HOH . N 7 HOH B 69 369 1008 HOH HOH . N 7 HOH B 70 370 1053 HOH HOH . N 7 HOH B 71 371 1181 HOH HOH . N 7 HOH B 72 372 1021 HOH HOH . N 7 HOH B 73 373 1034 HOH HOH . N 7 HOH B 74 374 1032 HOH HOH . N 7 HOH B 75 375 1028 HOH HOH . N 7 HOH B 76 376 1113 HOH HOH . N 7 HOH B 77 377 1126 HOH HOH . N 7 HOH B 78 378 1150 HOH HOH . N 7 HOH B 79 379 1020 HOH HOH . N 7 HOH B 80 380 1125 HOH HOH . N 7 HOH B 81 381 1056 HOH HOH . N 7 HOH B 82 382 1092 HOH HOH . N 7 HOH B 83 383 1236 HOH HOH . N 7 HOH B 84 384 1049 HOH HOH . N 7 HOH B 85 385 1115 HOH HOH . N 7 HOH B 86 386 1203 HOH HOH . N 7 HOH B 87 387 1174 HOH HOH . N 7 HOH B 88 388 1239 HOH HOH . N 7 HOH B 89 389 1084 HOH HOH . N 7 HOH B 90 390 1131 HOH HOH . N 7 HOH B 91 391 1163 HOH HOH . N 7 HOH B 92 392 1214 HOH HOH . N 7 HOH B 93 393 1204 HOH HOH . N 7 HOH B 94 394 1091 HOH HOH . N 7 HOH B 95 395 1170 HOH HOH . N 7 HOH B 96 396 1180 HOH HOH . N 7 HOH B 97 397 1072 HOH HOH . N 7 HOH B 98 398 1229 HOH HOH . N 7 HOH B 99 399 1238 HOH HOH . N 7 HOH B 100 400 1228 HOH HOH . N 7 HOH B 101 401 1140 HOH HOH . N 7 HOH B 102 402 1234 HOH HOH . N 7 HOH B 103 403 1172 HOH HOH . N 7 HOH B 104 404 1237 HOH HOH . N 7 HOH B 105 405 1030 HOH HOH . N 7 HOH B 106 406 1152 HOH HOH . N 7 HOH B 107 407 1193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . B . L 4 24.306 12.291 19.384 0.5 29.89 ? C1 GOL 205 B 1 HETATM 2 O O1 GOL . B . L 4 24.707 11.342 20.386 0.5 32.6 ? O1 GOL 205 B 1 HETATM 3 C C2 GOL . B . L 4 24.603 13.725 19.763 0.5 21.44 ? C2 GOL 205 B 1 HETATM 4 O O2 GOL . B . L 4 24.345 13.916 21.155 0.5 25.87 ? O2 GOL 205 B 1 HETATM 5 C C3 GOL . B . L 4 23.73 14.728 19.023 0.5 23.76 ? C3 GOL 205 B 1 HETATM 6 O O3 GOL . B . L 4 22.673 15.206 19.876 0.5 20.5 ? O3 GOL 205 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #