data_9B2P # _model_server_result.job_id HQ2UHcBjf21RmepgMmVKDg _model_server_result.datetime_utc '2024-12-03 13:35:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 9B2P # _exptl.entry_id 9B2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.42 _cell.angle_gamma 90 _cell.entry_id 9B2P _cell.length_a 160.77 _cell.length_b 109.11 _cell.length_c 97.17 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,N,O,P,Q,T 1 1 A,D,E,F,G,R 1 3 B,H,I,J,K,L,M,S 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -160.77 0 0 3 'crystal symmetry operation' 4_455 -x-1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 -80.385 54.555 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 111 A HIS 118 1_555 F CO CO . A CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 A ND1 HIS 113 A HIS 120 1_555 F CO CO . A CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 A OD1 ASN 115 A ASN 122 1_555 G FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc4 A NE2 HIS 116 A HIS 123 1_555 G FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 A NE2 HIS 191 A HIS 198 1_555 F CO CO . A CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 A OD2 ASP 213 A ASP 220 1_555 F CO CO . A CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 A OD1 ASP 213 A ASP 220 1_555 G FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc8 A OD2 ASP 213 A ASP 220 1_555 G FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc9 A NE2 HIS 259 A HIS 266 1_555 G FE FE . A FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc10 F CO CO . A CO 303 1_555 R O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc11 F CO CO . A CO 303 1_555 R O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc12 G FE FE . A FE 304 1_555 R O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc13 G FE FE . A FE 304 1_555 R O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc14 B NE2 HIS 111 P HIS 118 1_555 L CO CO . P CO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc15 B ND1 HIS 113 P HIS 120 1_555 L CO CO . P CO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc16 B OD1 ASN 115 P ASN 122 1_555 M FE FE . P FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc17 B NE2 HIS 116 P HIS 123 1_555 M FE FE . P FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc18 B NE2 HIS 191 P HIS 198 1_555 L CO CO . P CO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc19 B OD2 ASP 213 P ASP 220 1_555 L CO CO . P CO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc20 B OD1 ASP 213 P ASP 220 1_555 M FE FE . P FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc21 B OD2 ASP 213 P ASP 220 1_555 M FE FE . P FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc22 B NE2 HIS 259 P HIS 266 1_555 M FE FE . P FE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc23 L CO CO . P CO 305 1_555 S O HOH . P HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc24 L CO CO . P CO 305 1_555 S O HOH . P HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc25 M FE FE . P FE 306 1_555 S O HOH . P HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc26 M FE FE . P FE 306 1_555 S O HOH . P HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc27 C NE2 HIS 111 X HIS 118 1_555 P CO CO . X CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc28 C ND1 HIS 113 X HIS 120 1_555 P CO CO . X CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc29 C OD1 ASN 115 X ASN 122 1_555 Q FE FE . X FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc30 C NE2 HIS 116 X HIS 123 1_555 Q FE FE . X FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc31 C NE2 HIS 191 X HIS 198 1_555 P CO CO . X CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc32 C OD2 ASP 213 X ASP 220 1_555 P CO CO . X CO 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc33 C OD2 ASP 213 X ASP 220 1_555 Q FE FE . X FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc34 C NE2 HIS 259 X HIS 266 1_555 Q FE FE . X FE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc35 P CO CO . X CO 303 1_555 T O HOH . X HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc36 P CO CO . X CO 303 1_555 T O HOH . X HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc37 Q FE FE . X FE 304 1_555 T O HOH . X HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc38 Q FE FE . X FE 304 1_555 T O HOH . X HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9B2P _atom_sites.fract_transf_matrix[1][1] 0.00622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 301 301 SO4 SO4 . E 2 SO4 A 1 302 401 SO4 SO4 . F 3 CO A 1 303 4 CO CO . G 4 FE A 1 304 1 FE FE . H 2 SO4 P 1 301 301 SO4 SO4 . I 2 SO4 P 1 302 401 SO4 SO4 . J 5 EDO P 1 303 402 EDO EDO . K 5 EDO P 1 304 403 EDO EDO . L 3 CO P 1 305 4 CO CO . M 4 FE P 1 306 2 FE FE . N 2 SO4 X 1 301 301 SO4 SO4 . O 2 SO4 X 1 302 401 SO4 SO4 . P 3 CO X 1 303 4 CO CO . Q 4 FE X 1 304 3 FE FE . R 6 HOH A 1 401 177 HOH HOH . R 6 HOH A 2 402 167 HOH HOH . R 6 HOH A 3 403 108 HOH HOH . R 6 HOH A 4 404 62 HOH HOH . R 6 HOH A 5 405 160 HOH HOH . R 6 HOH A 6 406 149 HOH HOH . R 6 HOH A 7 407 147 HOH HOH . R 6 HOH A 8 408 122 HOH HOH . R 6 HOH A 9 409 15 HOH HOH . R 6 HOH A 10 410 166 HOH HOH . R 6 HOH A 11 411 13 HOH HOH . R 6 HOH A 12 412 41 HOH HOH . R 6 HOH A 13 413 63 HOH HOH . R 6 HOH A 14 414 16 HOH HOH . R 6 HOH A 15 415 154 HOH HOH . R 6 HOH A 16 416 118 HOH HOH . R 6 HOH A 17 417 153 HOH HOH . R 6 HOH A 18 418 155 HOH HOH . R 6 HOH A 19 419 81 HOH HOH . R 6 HOH A 20 420 97 HOH HOH . R 6 HOH A 21 421 50 HOH HOH . R 6 HOH A 22 422 82 HOH HOH . R 6 HOH A 23 423 138 HOH HOH . R 6 HOH A 24 424 26 HOH HOH . R 6 HOH A 25 425 52 HOH HOH . R 6 HOH A 26 426 150 HOH HOH . R 6 HOH A 27 427 110 HOH HOH . R 6 HOH A 28 428 158 HOH HOH . R 6 HOH A 29 429 7 HOH HOH . R 6 HOH A 30 430 30 HOH HOH . R 6 HOH A 31 431 109 HOH HOH . R 6 HOH A 32 432 45 HOH HOH . R 6 HOH A 33 433 56 HOH HOH . R 6 HOH A 34 434 46 HOH HOH . R 6 HOH A 35 435 161 HOH HOH . R 6 HOH A 36 436 40 HOH HOH . R 6 HOH A 37 437 76 HOH HOH . R 6 HOH A 38 438 48 HOH HOH . R 6 HOH A 39 439 139 HOH HOH . R 6 HOH A 40 440 69 HOH HOH . R 6 HOH A 41 441 173 HOH HOH . R 6 HOH A 42 442 163 HOH HOH . R 6 HOH A 43 443 44 HOH HOH . R 6 HOH A 44 444 51 HOH HOH . R 6 HOH A 45 445 162 HOH HOH . R 6 HOH A 46 446 125 HOH HOH . R 6 HOH A 47 447 83 HOH HOH . R 6 HOH A 48 448 103 HOH HOH . R 6 HOH A 49 449 71 HOH HOH . R 6 HOH A 50 450 136 HOH HOH . R 6 HOH A 51 451 6 HOH HOH . R 6 HOH A 52 452 38 HOH HOH . R 6 HOH A 53 453 172 HOH HOH . R 6 HOH A 54 454 86 HOH HOH . R 6 HOH A 55 455 169 HOH HOH . R 6 HOH A 56 456 168 HOH HOH . R 6 HOH A 57 457 5 HOH HOH . S 6 HOH P 1 401 121 HOH HOH . S 6 HOH P 2 402 178 HOH HOH . S 6 HOH P 3 403 140 HOH HOH . S 6 HOH P 4 404 107 HOH HOH . S 6 HOH P 5 405 54 HOH HOH . S 6 HOH P 6 406 159 HOH HOH . S 6 HOH P 7 407 68 HOH HOH . S 6 HOH P 8 408 117 HOH HOH . S 6 HOH P 9 409 96 HOH HOH . S 6 HOH P 10 410 36 HOH HOH . S 6 HOH P 11 411 165 HOH HOH . S 6 HOH P 12 412 92 HOH HOH . S 6 HOH P 13 413 151 HOH HOH . S 6 HOH P 14 414 66 HOH HOH . S 6 HOH P 15 415 17 HOH HOH . S 6 HOH P 16 416 145 HOH HOH . S 6 HOH P 17 417 8 HOH HOH . S 6 HOH P 18 418 75 HOH HOH . S 6 HOH P 19 419 100 HOH HOH . S 6 HOH P 20 420 47 HOH HOH . S 6 HOH P 21 421 111 HOH HOH . S 6 HOH P 22 422 129 HOH HOH . S 6 HOH P 23 423 37 HOH HOH . S 6 HOH P 24 424 28 HOH HOH . S 6 HOH P 25 425 64 HOH HOH . S 6 HOH P 26 426 21 HOH HOH . S 6 HOH P 27 427 157 HOH HOH . S 6 HOH P 28 428 141 HOH HOH . S 6 HOH P 29 429 174 HOH HOH . S 6 HOH P 30 430 101 HOH HOH . S 6 HOH P 31 431 105 HOH HOH . S 6 HOH P 32 432 20 HOH HOH . S 6 HOH P 33 433 11 HOH HOH . S 6 HOH P 34 434 87 HOH HOH . S 6 HOH P 35 435 123 HOH HOH . S 6 HOH P 36 436 124 HOH HOH . S 6 HOH P 37 437 12 HOH HOH . S 6 HOH P 38 438 43 HOH HOH . S 6 HOH P 39 439 99 HOH HOH . S 6 HOH P 40 440 67 HOH HOH . S 6 HOH P 41 441 128 HOH HOH . S 6 HOH P 42 442 25 HOH HOH . S 6 HOH P 43 443 33 HOH HOH . S 6 HOH P 44 444 59 HOH HOH . S 6 HOH P 45 445 114 HOH HOH . S 6 HOH P 46 446 176 HOH HOH . S 6 HOH P 47 447 84 HOH HOH . S 6 HOH P 48 448 175 HOH HOH . S 6 HOH P 49 449 91 HOH HOH . T 6 HOH X 1 401 164 HOH HOH . T 6 HOH X 2 402 27 HOH HOH . T 6 HOH X 3 403 130 HOH HOH . T 6 HOH X 4 404 60 HOH HOH . T 6 HOH X 5 405 152 HOH HOH . T 6 HOH X 6 406 143 HOH HOH . T 6 HOH X 7 407 49 HOH HOH . T 6 HOH X 8 408 77 HOH HOH . T 6 HOH X 9 409 31 HOH HOH . T 6 HOH X 10 410 98 HOH HOH . T 6 HOH X 11 411 22 HOH HOH . T 6 HOH X 12 412 132 HOH HOH . T 6 HOH X 13 413 146 HOH HOH . T 6 HOH X 14 414 61 HOH HOH . T 6 HOH X 15 415 42 HOH HOH . T 6 HOH X 16 416 32 HOH HOH . T 6 HOH X 17 417 116 HOH HOH . T 6 HOH X 18 418 73 HOH HOH . T 6 HOH X 19 419 24 HOH HOH . T 6 HOH X 20 420 156 HOH HOH . T 6 HOH X 21 421 171 HOH HOH . T 6 HOH X 22 422 142 HOH HOH . T 6 HOH X 23 423 57 HOH HOH . T 6 HOH X 24 424 148 HOH HOH . T 6 HOH X 25 425 19 HOH HOH . T 6 HOH X 26 426 144 HOH HOH . T 6 HOH X 27 427 70 HOH HOH . T 6 HOH X 28 428 93 HOH HOH . T 6 HOH X 29 429 58 HOH HOH . T 6 HOH X 30 430 55 HOH HOH . T 6 HOH X 31 431 39 HOH HOH . T 6 HOH X 32 432 115 HOH HOH . T 6 HOH X 33 433 4 HOH HOH . T 6 HOH X 34 434 18 HOH HOH . T 6 HOH X 35 435 23 HOH HOH . T 6 HOH X 36 436 29 HOH HOH . T 6 HOH X 37 437 79 HOH HOH . T 6 HOH X 38 438 72 HOH HOH . T 6 HOH X 39 439 131 HOH HOH . T 6 HOH X 40 440 102 HOH HOH . T 6 HOH X 41 441 95 HOH HOH . T 6 HOH X 42 442 14 HOH HOH . T 6 HOH X 43 443 104 HOH HOH . T 6 HOH X 44 444 74 HOH HOH . T 6 HOH X 45 445 135 HOH HOH . T 6 HOH X 46 446 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.615 _atom_site.Cartn_y -55.888 _atom_site.Cartn_z -11.127 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #