data_9B3X
#
_model_server_result.job_id            IxqYfjHOR1o1SKoOpmQgng 
_model_server_result.datetime_utc      '2025-03-03 03:03:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":801}' 
#
_entry.id    9B3X 
#
_exptl.entry_id    9B3X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              522.632 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B3X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C25 H49 N O8 P -1' 
_chem_comp.formula_weight    522.632 
_chem_comp.id                PEX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PEX sing 269 n n 
O2 P1 PEX doub 270 n n 
P1 O3 PEX sing 271 n n 
P1 O8 PEX sing 272 n n 
O3 C1 PEX sing 273 n n 
C1 C2 PEX sing 274 n n 
C1 H1 PEX sing 275 n n 
C1 H2 PEX sing 276 n n 
C2 C3 PEX sing 277 n n 
C2 O6 PEX sing 278 n n 
C2 H3 PEX sing 279 n n 
C3 O4 PEX sing 280 n n 
C3 H4 PEX sing 281 n n 
C3 H5 PEX sing 282 n n 
O4 C4 PEX sing 283 n n 
C4 O5 PEX doub 284 n n 
C4 C5 PEX sing 285 n n 
C5 C6 PEX sing 286 n n 
C5 H6 PEX sing 287 n n 
C5 H7 PEX sing 288 n n 
C6 C7 PEX sing 289 n n 
C6 H8 PEX sing 290 n n 
C6 H9 PEX sing 291 n n 
C7 C8 PEX sing 292 n n 
C7 H10 PEX sing 293 n n 
C7 H11 PEX sing 294 n n 
C8 C9 PEX sing 295 n n 
C8 H12 PEX sing 296 n n 
C8 H13 PEX sing 297 n n 
C9 C10 PEX sing 298 n n 
C9 H14 PEX sing 299 n n 
C9 H15 PEX sing 300 n n 
C10 C11 PEX sing 301 n n 
C10 H16 PEX sing 302 n n 
C10 H17 PEX sing 303 n n 
C11 C12 PEX sing 304 n n 
C11 H18 PEX sing 305 n n 
C11 H19 PEX sing 306 n n 
C12 C13 PEX sing 307 n n 
C12 H20 PEX sing 308 n n 
C12 H21 PEX sing 309 n n 
C13 H22 PEX sing 310 n n 
C13 H23 PEX sing 311 n n 
C13 H24 PEX sing 312 n n 
O6 C14 PEX sing 313 n n 
C14 O7 PEX doub 314 n n 
C14 C15 PEX sing 315 n n 
C15 C16 PEX sing 316 n n 
C15 H25 PEX sing 317 n n 
C15 H26 PEX sing 318 n n 
C16 C17 PEX sing 319 n n 
C16 H27 PEX sing 320 n n 
C16 H28 PEX sing 321 n n 
C17 C18 PEX sing 322 n n 
C17 H29 PEX sing 323 n n 
C17 H30 PEX sing 324 n n 
C18 C19 PEX sing 325 n n 
C18 H31 PEX sing 326 n n 
C18 H32 PEX sing 327 n n 
C19 C20 PEX sing 328 n n 
C19 H33 PEX sing 329 n n 
C19 H34 PEX sing 330 n n 
C20 C21 PEX sing 331 n n 
C20 H35 PEX sing 332 n n 
C20 H36 PEX sing 333 n n 
C21 C22 PEX sing 334 n n 
C21 H37 PEX sing 335 n n 
C21 H38 PEX sing 336 n n 
C22 C23 PEX sing 337 n n 
C22 H39 PEX sing 338 n n 
C22 H40 PEX sing 339 n n 
C23 H41 PEX sing 340 n n 
C23 H42 PEX sing 341 n n 
C23 H43 PEX sing 342 n n 
O8 C24 PEX sing 343 n n 
C24 C25 PEX sing 344 n n 
C24 H44 PEX sing 345 n n 
C24 H45 PEX sing 346 n n 
C25 N1 PEX sing 347 n n 
C25 H46 PEX sing 348 n n 
C25 H47 PEX sing 349 n n 
N1 H48 PEX sing 350 n n 
N1 H49 PEX sing 351 n n 
#
_atom_sites.entry_id                     9B3X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PEX A 1 801 1004 PEX PEX . 
F 3 FZ4 A 1 802 1005 FZ4 FZ4 . 
G 2 PEX B 1 801 1004 PEX PEX . 
H 3 FZ4 B 1 802 1005 FZ4 FZ4 . 
I 2 PEX C 1 801 1004 PEX PEX . 
J 3 FZ4 C 1 802 1005 FZ4 FZ4 . 
K 2 PEX D 1 801 1004 PEX PEX . 
L 3 FZ4 D 1 802 1005 FZ4 FZ4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PEX . . . K 2 163.766 113.98 146.995 1 69.47 ? O1 PEX 801 D 1 
HETATM 2 O O2 PEX . . . K 2 166.023 113.554 145.814 1 73.39 ? O2 PEX 801 D 1 
HETATM 3 P P1 PEX . . . K 2 165.265 114.068 147.002 1 84.2 ? P1 PEX 801 D 1 
HETATM 4 O O3 PEX . . . K 2 165.852 113.422 148.396 1 70.21 ? O3 PEX 801 D 1 
HETATM 5 C C1 PEX . . . K 2 166.12 112.038 148.424 1 63.84 ? C1 PEX 801 D 1 
HETATM 6 C C2 PEX . . . K 2 166.823 111.595 149.697 1 60.48 ? C2 PEX 801 D 1 
HETATM 7 C C3 PEX . . . K 2 166.069 111.893 150.974 1 58.87 ? C3 PEX 801 D 1 
HETATM 8 O O4 PEX . . . K 2 166.923 111.704 152.094 1 72.9 ? O4 PEX 801 D 1 
HETATM 9 C C4 PEX . . . K 2 166.415 111.934 153.298 1 67.34 ? C4 PEX 801 D 1 
HETATM 10 O O5 PEX . . . K 2 165.306 112.378 153.476 1 70.54 ? O5 PEX 801 D 1 
HETATM 11 C C5 PEX . . . K 2 167.387 111.574 154.386 1 57.11 ? C5 PEX 801 D 1 
HETATM 12 C C6 PEX . . . K 2 167.529 110.074 154.596 1 63.14 ? C6 PEX 801 D 1 
HETATM 13 C C7 PEX . . . K 2 168.439 109.739 155.77 1 66.48 ? C7 PEX 801 D 1 
HETATM 14 C C8 PEX . . . K 2 168.338 108.278 156.186 1 69.19 ? C8 PEX 801 D 1 
HETATM 15 C C9 PEX . . . K 2 166.972 107.903 156.747 1 67.42 ? C9 PEX 801 D 1 
HETATM 16 C C10 PEX . . . K 2 166.734 106.398 156.783 1 68.29 ? C10 PEX 801 D 1 
HETATM 17 C C11 PEX . . . K 2 166.716 105.759 155.401 1 69.54 ? C11 PEX 801 D 1 
HETATM 18 C C12 PEX . . . K 2 166.511 104.249 155.436 1 68.37 ? C12 PEX 801 D 1 
HETATM 19 C C13 PEX . . . K 2 166.359 103.641 154.049 1 65.58 ? C13 PEX 801 D 1 
HETATM 20 O O6 PEX . . . K 2 167.118 110.192 149.689 1 69.16 ? O6 PEX 801 D 1 
HETATM 21 C C14 PEX . . . K 2 168.315 109.778 149.28 1 69.77 ? C14 PEX 801 D 1 
HETATM 22 O O7 PEX . . . K 2 169.131 110.501 148.769 1 71.14 ? O7 PEX 801 D 1 
HETATM 23 C C15 PEX . . . K 2 168.51 108.308 149.54 1 65.93 ? C15 PEX 801 D 1 
HETATM 24 C C16 PEX . . . K 2 168.688 107.959 151.009 1 65.96 ? C16 PEX 801 D 1 
HETATM 25 C C17 PEX . . . K 2 170.155 107.854 151.407 1 68.61 ? C17 PEX 801 D 1 
HETATM 26 C C18 PEX . . . K 2 170.848 106.63 150.82 1 68.12 ? C18 PEX 801 D 1 
HETATM 27 C C19 PEX . . . K 2 172.127 106.253 151.557 1 70.99 ? C19 PEX 801 D 1 
HETATM 28 C C20 PEX . . . K 2 173.004 107.452 151.896 1 73.45 ? C20 PEX 801 D 1 
HETATM 29 C C21 PEX . . . K 2 174.409 107.07 152.342 1 73.14 ? C21 PEX 801 D 1 
HETATM 30 C C22 PEX . . . K 2 175.281 108.273 152.681 1 71.89 ? C22 PEX 801 D 1 
HETATM 31 C C23 PEX . . . K 2 176.761 107.931 152.764 1 69.93 ? C23 PEX 801 D 1 
HETATM 32 O O8 PEX . . . K 2 165.737 115.586 147.393 1 66.7 ? O8 PEX 801 D 1 
HETATM 33 C C24 PEX . . . K 2 165.512 116.598 146.427 1 60.28 ? C24 PEX 801 D 1 
HETATM 34 C C25 PEX . . . K 2 164.152 117.23 146.615 1 56.53 ? C25 PEX 801 D 1 
HETATM 35 N N1 PEX . . . K 2 163.929 118.337 145.702 1 50.06 ? N1 PEX 801 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#