data_9B4E # _model_server_result.job_id Udmptu_Srj99r6ZaGvu4cA _model_server_result.datetime_utc '2024-10-18 22:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 9B4E # _exptl.entry_id 9B4E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B4E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N ? 3 J N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 153 B CYS 153 1_555 B SG CYS 213 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE2 GLU 197 A GLU 197 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A OE1 GLU 200 A GLU 200 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc3 A OE1 GLN 217 A GLN 217 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A OD2 ASP 221 A ASP 221 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 B OE2 GLU 197 B GLU 197 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc6 B OE1 GLU 200 B GLU 200 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 B OE1 GLN 217 B GLN 217 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 B OD2 ASP 221 B ASP 221 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 431 n n O3 P1 LBN sing 432 n n O2 C9 LBN sing 433 n n O2 P1 LBN sing 434 n n C9 C6 LBN sing 435 n n O4 P1 LBN doub 436 n n P1 O1 LBN sing 437 n n C6 N1 LBN sing 438 n n N1 C15 LBN sing 439 n n N1 C18 LBN sing 440 n n O1 C1 LBN sing 441 n n C2 C1 LBN sing 442 n n C2 C3 LBN sing 443 n n C2 O7 LBN sing 444 n n C3 O5 LBN sing 445 n n O6 C25 LBN doub 446 n n O5 C25 LBN sing 447 n n O7 C34 LBN sing 448 n n C25 C26 LBN sing 449 n n C34 C35 LBN sing 450 n n C34 O8 LBN doub 451 n n C26 C27 LBN sing 452 n n C35 C36 LBN sing 453 n n C27 C28 LBN sing 454 n n C36 C37 LBN sing 455 n n C28 C29 LBN sing 456 n n C37 C38 LBN sing 457 n n C29 C30 LBN sing 458 n n C39 C38 LBN sing 459 n n C39 C40 LBN sing 460 n n C41 C40 LBN sing 461 n n C41 C42 LBN sing 462 n n C30 C31 LBN sing 463 n n C42 C5 LBN doub 464 z n C31 C32 LBN sing 465 n n C5 C8 LBN sing 466 n n C8 C11 LBN sing 467 n n C32 C33 LBN sing 468 n n C11 C14 LBN sing 469 n n C33 C4 LBN sing 470 n n C14 C17 LBN sing 471 n n C4 C7 LBN sing 472 n n C17 C20 LBN sing 473 n n C7 C10 LBN sing 474 n n C20 C22 LBN sing 475 n n C10 C13 LBN sing 476 n n C22 C23 LBN sing 477 n n C13 C16 LBN sing 478 n n C23 C24 LBN sing 479 n n C16 C19 LBN sing 480 n n C19 C21 LBN sing 481 n n C1 H1 LBN sing 482 n n C1 H2 LBN sing 483 n n C2 H3 LBN sing 484 n n C3 H4 LBN sing 485 n n C3 H5 LBN sing 486 n n C4 H6 LBN sing 487 n n C4 H7 LBN sing 488 n n C5 H8 LBN sing 489 n n C6 H9 LBN sing 490 n n C6 H10 LBN sing 491 n n C7 H11 LBN sing 492 n n C7 H12 LBN sing 493 n n C8 H13 LBN sing 494 n n C8 H14 LBN sing 495 n n C9 H15 LBN sing 496 n n C9 H16 LBN sing 497 n n C10 H17 LBN sing 498 n n C10 H18 LBN sing 499 n n C11 H19 LBN sing 500 n n C12 H20 LBN sing 501 n n C12 H21 LBN sing 502 n n C12 H22 LBN sing 503 n n C13 H23 LBN sing 504 n n C13 H24 LBN sing 505 n n C14 H25 LBN sing 506 n n C15 H26 LBN sing 507 n n C15 H27 LBN sing 508 n n C15 H28 LBN sing 509 n n C16 H30 LBN sing 510 n n C16 H31 LBN sing 511 n n C17 H32 LBN sing 512 n n C17 H33 LBN sing 513 n n C18 H34 LBN sing 514 n n C18 H35 LBN sing 515 n n C18 H36 LBN sing 516 n n C19 H37 LBN sing 517 n n C19 H38 LBN sing 518 n n C20 H39 LBN sing 519 n n C20 H40 LBN sing 520 n n C21 H41 LBN sing 521 n n C21 H42 LBN sing 522 n n C21 H43 LBN sing 523 n n C22 H44 LBN sing 524 n n C22 H45 LBN sing 525 n n C23 H46 LBN sing 526 n n C23 H47 LBN sing 527 n n C24 H48 LBN sing 528 n n C24 H49 LBN sing 529 n n C24 H50 LBN sing 530 n n C26 H51 LBN sing 531 n n C26 H52 LBN sing 532 n n C27 H53 LBN sing 533 n n C27 H54 LBN sing 534 n n C28 H55 LBN sing 535 n n C28 H56 LBN sing 536 n n C29 H57 LBN sing 537 n n C29 H58 LBN sing 538 n n C30 H59 LBN sing 539 n n C30 H60 LBN sing 540 n n C31 H61 LBN sing 541 n n C31 H62 LBN sing 542 n n C32 H63 LBN sing 543 n n C32 H64 LBN sing 544 n n C33 H65 LBN sing 545 n n C33 H66 LBN sing 546 n n C35 H67 LBN sing 547 n n C35 H68 LBN sing 548 n n C36 H69 LBN sing 549 n n C36 H70 LBN sing 550 n n C37 H71 LBN sing 551 n n C37 H72 LBN sing 552 n n C38 H73 LBN sing 553 n n C38 H74 LBN sing 554 n n C39 H75 LBN sing 555 n n C40 H76 LBN sing 556 n n C41 H77 LBN sing 557 n n C41 H78 LBN sing 558 n n C42 H79 LBN sing 559 n n C11 H80 LBN sing 560 n n C14 H81 LBN sing 561 n n C39 H82 LBN sing 562 n n C40 H83 LBN sing 563 n n # _atom_sites.entry_id 9B4E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P5S A 1 501 500 P5S P5S . D 2 P5S A 1 502 501 P5S P5S . E 3 LBN A 1 503 602 LBN LBN . F 4 A1AIS A 1 504 701 A1AIS DPI . G 5 6OU A 1 505 801 6OU PPE . H 6 CA A 1 506 901 CA CA . I 3 LBN A 1 507 601 LBN LBN . J 3 LBN B 1 601 601 LBN LBN . K 2 P5S B 1 602 500 P5S P5S . L 2 P5S B 1 603 501 P5S P5S . M 3 LBN B 1 604 602 LBN LBN . N 4 A1AIS B 1 605 701 A1AIS DPI . O 5 6OU B 1 606 801 6OU PPE . P 6 CA B 1 607 901 CA CA . Q 7 HOH A 1 601 1146 HOH HOH . Q 7 HOH A 2 602 1111 HOH HOH . Q 7 HOH A 3 603 1126 HOH HOH . Q 7 HOH A 4 604 1143 HOH HOH . Q 7 HOH A 5 605 1114 HOH HOH . Q 7 HOH A 6 606 1141 HOH HOH . Q 7 HOH A 7 607 1103 HOH HOH . Q 7 HOH A 8 608 1134 HOH HOH . R 7 HOH B 1 701 1146 HOH HOH . R 7 HOH B 2 702 1126 HOH HOH . R 7 HOH B 3 703 1111 HOH HOH . R 7 HOH B 4 704 1143 HOH HOH . R 7 HOH B 5 705 1114 HOH HOH . R 7 HOH B 6 706 1141 HOH HOH . R 7 HOH B 7 707 1103 HOH HOH . R 7 HOH B 8 708 1134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . E 3 113.824 103.258 131.088 1 45.56 ? C1 LBN 503 A 1 HETATM 2 N N1 LBN . . . E 3 114.933 107.68 134.643 1 45.56 ? N1 LBN 503 A 1 HETATM 3 P P1 LBN . . . E 3 112.495 104.728 132.82 1 45.56 ? P1 LBN 503 A 1 HETATM 4 C C2 LBN . . . E 3 113.457 103.686 129.665 1 45.56 ? C2 LBN 503 A 1 HETATM 5 C C3 LBN . . . E 3 114.587 104.531 129.136 1 45.56 ? C3 LBN 503 A 1 HETATM 6 C C4 LBN . . . E 3 121.644 105.294 121.729 1 45.56 ? C4 LBN 503 A 1 HETATM 7 C C5 LBN . . . E 3 111.448 97.42 118.073 1 45.56 ? C5 LBN 503 A 1 HETATM 8 C C6 LBN . . . E 3 114.7 107.376 133.239 1 45.56 ? C6 LBN 503 A 1 HETATM 9 O O1 LBN . . . E 3 113.848 104.401 131.909 1 45.56 ? O1 LBN 503 A 1 HETATM 10 C C7 LBN . . . E 3 122.014 103.818 121.491 1 45.56 ? C7 LBN 503 A 1 HETATM 11 C C8 LBN . . . E 3 112.042 96.21 117.331 1 45.56 ? C8 LBN 503 A 1 HETATM 12 C C9 LBN . . . E 3 113.235 107.224 132.85 1 45.56 ? C9 LBN 503 A 1 HETATM 13 O O2 LBN . . . E 3 112.673 106.169 133.566 1 45.56 ? O2 LBN 503 A 1 HETATM 14 C C10 LBN . . . E 3 123.505 103.667 121.195 1 45.56 ? C10 LBN 503 A 1 HETATM 15 C C11 LBN . . . E 3 111.211 95.934 116.05 1 45.56 ? C11 LBN 503 A 1 HETATM 16 C C12 LBN . . . E 3 115.193 106.465 135.389 1 45.56 ? C12 LBN 503 A 1 HETATM 17 O O3 LBN . . . E 3 111.275 104.77 131.934 1 45.56 ? O3 LBN 503 A 1 HETATM 18 C C13 LBN . . . E 3 123.882 102.254 120.759 1 45.56 ? C13 LBN 503 A 1 HETATM 19 C C14 LBN . . . E 3 112.095 95.679 114.819 1 45.56 ? C14 LBN 503 A 1 HETATM 20 C C15 LBN . . . E 3 113.85 108.438 135.243 1 45.56 ? C15 LBN 503 A 1 HETATM 21 O O4 LBN . . . E 3 112.336 103.666 133.876 1 45.56 ? O4 LBN 503 A 1 HETATM 22 C C16 LBN . . . E 3 125.21 102.24 120.014 1 45.56 ? C16 LBN 503 A 1 HETATM 23 C C17 LBN . . . E 3 111.262 95.361 113.567 1 45.56 ? C17 LBN 503 A 1 HETATM 24 C C18 LBN . . . E 3 116.113 108.496 134.722 1 45.56 ? C18 LBN 503 A 1 HETATM 25 C C19 LBN . . . E 3 126.166 101.199 120.578 1 45.56 ? C19 LBN 503 A 1 HETATM 26 C C20 LBN . . . E 3 112.097 95.386 112.293 1 45.56 ? C20 LBN 503 A 1 HETATM 27 C C21 LBN . . . E 3 127.384 100.995 119.682 1 45.56 ? C21 LBN 503 A 1 HETATM 28 C C22 LBN . . . E 3 111.244 95.419 111.04 1 45.56 ? C22 LBN 503 A 1 HETATM 29 C C23 LBN . . . E 3 112.078 95.707 109.803 1 45.56 ? C23 LBN 503 A 1 HETATM 30 C C24 LBN . . . E 3 111.305 96.459 108.735 1 45.56 ? C24 LBN 503 A 1 HETATM 31 C C25 LBN . . . E 3 115.415 105.372 127.13 1 45.56 ? C25 LBN 503 A 1 HETATM 32 O O5 LBN . . . E 3 114.599 104.411 127.742 1 45.56 ? O5 LBN 503 A 1 HETATM 33 C C26 LBN . . . E 3 114.977 106.052 125.83 1 45.56 ? C26 LBN 503 A 1 HETATM 34 O O6 LBN . . . E 3 116.451 105.655 127.621 1 45.56 ? O6 LBN 503 A 1 HETATM 35 C C27 LBN . . . E 3 116.025 107.072 125.353 1 45.56 ? C27 LBN 503 A 1 HETATM 36 C C28 LBN . . . E 3 116.42 106.825 123.891 1 45.56 ? C28 LBN 503 A 1 HETATM 37 C C29 LBN . . . E 3 116.583 108.119 123.095 1 45.56 ? C29 LBN 503 A 1 HETATM 38 C C30 LBN . . . E 3 118.027 108.281 122.627 1 45.56 ? C30 LBN 503 A 1 HETATM 39 C C31 LBN . . . E 3 118.342 107.367 121.434 1 45.56 ? C31 LBN 503 A 1 HETATM 40 C C32 LBN . . . E 3 119.856 107.087 121.334 1 45.56 ? C32 LBN 503 A 1 HETATM 41 C C33 LBN . . . E 3 120.161 105.574 121.415 1 45.56 ? C33 LBN 503 A 1 HETATM 42 C C34 LBN . . . E 3 112.129 102.446 128.091 1 45.56 ? C34 LBN 503 A 1 HETATM 43 O O7 LBN . . . E 3 113.328 102.533 128.86 1 45.56 ? O7 LBN 503 A 1 HETATM 44 C C35 LBN . . . E 3 112.224 102.246 126.553 1 45.56 ? C35 LBN 503 A 1 HETATM 45 O O8 LBN . . . E 3 111.072 102.525 128.617 1 45.56 ? O8 LBN 503 A 1 HETATM 46 C C36 LBN . . . E 3 111.104 101.35 125.985 1 45.56 ? C36 LBN 503 A 1 HETATM 47 C C37 LBN . . . E 3 111.116 101.342 124.451 1 45.56 ? C37 LBN 503 A 1 HETATM 48 C C38 LBN . . . E 3 111.139 99.923 123.865 1 45.56 ? C38 LBN 503 A 1 HETATM 49 C C39 LBN . . . E 3 110.82 99.938 122.364 1 45.56 ? C39 LBN 503 A 1 HETATM 50 C C40 LBN . . . E 3 111.352 98.713 121.616 1 45.56 ? C40 LBN 503 A 1 HETATM 51 C C41 LBN . . . E 3 111.193 98.881 120.083 1 45.56 ? C41 LBN 503 A 1 HETATM 52 C C42 LBN . . . E 3 111.796 97.668 119.347 1 45.56 ? C42 LBN 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #