data_9B4E
#
_model_server_result.job_id            eJKcm0csDnDcagjep8373w 
_model_server_result.datetime_utc      '2024-10-18 22:16:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b4e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    9B4E 
#
_exptl.entry_id    9B4E 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              811.032 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B4E 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B4E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 153 B CYS 153 1_555 B SG CYS 213 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE2 GLU 197 A GLU 197 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc2 A OE1 GLU 200 A GLU 200 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc3 A OE1 GLN 217 A GLN 217 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc4 A OD2 ASP 221 A ASP 221 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc5 B OE2 GLU 197 B GLU 197 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc6 B OE1 GLU 200 B GLU 200 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc7 B OE1 GLN 217 B GLN 217 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc8 B OD2 ASP 221 B ASP 221 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
#
_chem_comp.formula           'C41 H79 O13 P' 
_chem_comp.formula_weight    811.032 
_chem_comp.id                A1AIS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C49 C48 A1AIS sing 125 n n 
C48 C47 A1AIS sing 126 n n 
C47 C46 A1AIS sing 127 n n 
C46 C45 A1AIS sing 128 n n 
C44 C45 A1AIS sing 129 n n 
C44 C43 A1AIS sing 130 n n 
C42 C43 A1AIS sing 131 n n 
C42 C41 A1AIS sing 132 n n 
C41 C39 A1AIS sing 133 n n 
C10 C11 A1AIS sing 134 n n 
C39 O38 A1AIS sing 135 n n 
C39 O40 A1AIS doub 136 n n 
O38 C20 A1AIS sing 137 n n 
C12 C11 A1AIS sing 138 n n 
C12 C13 A1AIS sing 139 n n 
O34 C31 A1AIS sing 140 n n 
C13 C14 A1AIS sing 141 n n 
C20 C19 A1AIS sing 142 n n 
C20 C21 A1AIS sing 143 n n 
C14 C15 A1AIS sing 144 n n 
O33 C32 A1AIS sing 145 n n 
C19 O18 A1AIS sing 146 n n 
C21 O22 A1AIS sing 147 n n 
O17 C16 A1AIS doub 148 n n 
C16 O18 A1AIS sing 149 n n 
C16 C15 A1AIS sing 150 n n 
C31 C32 A1AIS sing 151 n n 
C31 C30 A1AIS sing 152 n n 
O35 C30 A1AIS sing 153 n n 
C32 C27 A1AIS sing 154 n n 
O22 P23 A1AIS sing 155 n n 
C30 C29 A1AIS sing 156 n n 
C27 O26 A1AIS sing 157 n n 
C27 C28 A1AIS sing 158 n n 
P23 O26 A1AIS sing 159 n n 
P23 O24 A1AIS doub 160 n n 
P23 O25 A1AIS sing 161 n n 
C29 C28 A1AIS sing 162 n n 
C29 O36 A1AIS sing 163 n n 
C28 O37 A1AIS sing 164 n n 
C11 H1 A1AIS sing 165 n n 
C11 H2 A1AIS sing 166 n n 
C12 H3 A1AIS sing 167 n n 
C12 H4 A1AIS sing 168 n n 
C14 H5 A1AIS sing 169 n n 
C14 H6 A1AIS sing 170 n n 
C19 H7 A1AIS sing 171 n n 
C19 H8 A1AIS sing 172 n n 
C20 H9 A1AIS sing 173 n n 
C21 H10 A1AIS sing 174 n n 
C21 H11 A1AIS sing 175 n n 
O35 H12 A1AIS sing 176 n n 
C41 H13 A1AIS sing 177 n n 
C41 H14 A1AIS sing 178 n n 
C44 H15 A1AIS sing 179 n n 
C44 H16 A1AIS sing 180 n n 
C45 H17 A1AIS sing 181 n n 
C45 H18 A1AIS sing 182 n n 
C47 H19 A1AIS sing 183 n n 
C47 H20 A1AIS sing 184 n n 
C48 H21 A1AIS sing 185 n n 
C48 H22 A1AIS sing 186 n n 
C49 H23 A1AIS sing 187 n n 
C49 H24 A1AIS sing 188 n n 
C28 H26 A1AIS sing 189 n n 
C29 H27 A1AIS sing 190 n n 
C10 H28 A1AIS sing 191 n n 
C10 H29 A1AIS sing 192 n n 
C13 H31 A1AIS sing 193 n n 
C13 H32 A1AIS sing 194 n n 
C15 H33 A1AIS sing 195 n n 
C15 H34 A1AIS sing 196 n n 
C27 H35 A1AIS sing 197 n n 
C30 H36 A1AIS sing 198 n n 
C31 H37 A1AIS sing 199 n n 
C32 H38 A1AIS sing 200 n n 
C42 H39 A1AIS sing 201 n n 
C42 H40 A1AIS sing 202 n n 
C43 H41 A1AIS sing 203 n n 
C43 H42 A1AIS sing 204 n n 
C46 H43 A1AIS sing 205 n n 
C46 H44 A1AIS sing 206 n n 
O25 H45 A1AIS sing 207 n n 
O33 H46 A1AIS sing 208 n n 
O34 H47 A1AIS sing 209 n n 
O36 H48 A1AIS sing 210 n n 
O37 H49 A1AIS sing 211 n n 
C10 C1 A1AIS sing 212 n n 
C1 C2 A1AIS sing 213 n n 
C2 C3 A1AIS sing 214 n n 
C3 C4 A1AIS sing 215 n n 
C4 C5 A1AIS sing 216 n n 
C5 C6 A1AIS sing 217 n n 
C6 C7 A1AIS sing 218 n n 
C7 C8 A1AIS sing 219 n n 
C8 C9 A1AIS sing 220 n n 
C49 C17 A1AIS sing 221 n n 
C17 C18 A1AIS sing 222 n n 
C18 C22 A1AIS sing 223 n n 
C22 C23 A1AIS sing 224 n n 
C23 C24 A1AIS sing 225 n n 
C24 C25 A1AIS sing 226 n n 
C1 H25 A1AIS sing 227 n n 
C1 H30 A1AIS sing 228 n n 
C2 H50 A1AIS sing 229 n n 
C2 H51 A1AIS sing 230 n n 
C3 H52 A1AIS sing 231 n n 
C3 H53 A1AIS sing 232 n n 
C4 H54 A1AIS sing 233 n n 
C4 H55 A1AIS sing 234 n n 
C5 H56 A1AIS sing 235 n n 
C5 H57 A1AIS sing 236 n n 
C6 H58 A1AIS sing 237 n n 
C6 H59 A1AIS sing 238 n n 
C7 H60 A1AIS sing 239 n n 
C7 H61 A1AIS sing 240 n n 
C8 H62 A1AIS sing 241 n n 
C8 H63 A1AIS sing 242 n n 
C9 H64 A1AIS sing 243 n n 
C9 H65 A1AIS sing 244 n n 
C9 H66 A1AIS sing 245 n n 
C17 H67 A1AIS sing 246 n n 
C17 H68 A1AIS sing 247 n n 
C18 H69 A1AIS sing 248 n n 
C18 H70 A1AIS sing 249 n n 
C22 H71 A1AIS sing 250 n n 
C22 H72 A1AIS sing 251 n n 
C23 H73 A1AIS sing 252 n n 
C23 H74 A1AIS sing 253 n n 
C24 H75 A1AIS sing 254 n n 
C24 H76 A1AIS sing 255 n n 
C25 H77 A1AIS sing 256 n n 
C25 H78 A1AIS sing 257 n n 
C25 H79 A1AIS sing 258 n n 
#
_atom_sites.entry_id                     9B4E 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 P5S A 1 501 500 P5S P5S . 
D 2 P5S A 1 502 501 P5S P5S . 
E 3 LBN A 1 503 602 LBN LBN . 
F 4 A1AIS A 1 504 701 A1AIS DPI . 
G 5 6OU A 1 505 801 6OU PPE . 
H 6 CA A 1 506 901 CA CA . 
I 3 LBN A 1 507 601 LBN LBN . 
J 3 LBN B 1 601 601 LBN LBN . 
K 2 P5S B 1 602 500 P5S P5S . 
L 2 P5S B 1 603 501 P5S P5S . 
M 3 LBN B 1 604 602 LBN LBN . 
N 4 A1AIS B 1 605 701 A1AIS DPI . 
O 5 6OU B 1 606 801 6OU PPE . 
P 6 CA B 1 607 901 CA CA . 
Q 7 HOH A 1 601 1146 HOH HOH . 
Q 7 HOH A 2 602 1111 HOH HOH . 
Q 7 HOH A 3 603 1126 HOH HOH . 
Q 7 HOH A 4 604 1143 HOH HOH . 
Q 7 HOH A 5 605 1114 HOH HOH . 
Q 7 HOH A 6 606 1141 HOH HOH . 
Q 7 HOH A 7 607 1103 HOH HOH . 
Q 7 HOH A 8 608 1134 HOH HOH . 
R 7 HOH B 1 701 1146 HOH HOH . 
R 7 HOH B 2 702 1126 HOH HOH . 
R 7 HOH B 3 703 1111 HOH HOH . 
R 7 HOH B 4 704 1143 HOH HOH . 
R 7 HOH B 5 705 1114 HOH HOH . 
R 7 HOH B 6 706 1141 HOH HOH . 
R 7 HOH B 7 707 1103 HOH HOH . 
R 7 HOH B 8 708 1134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 A1AIS . . . F 4 143.843 126.211 125.832 1 45.17 ? C11 A1AIS 504 A 1 
HETATM 2 C C12 A1AIS . . . F 4 143.819 127.718 126.082 1 45.17 ? C12 A1AIS 504 A 1 
HETATM 3 C C14 A1AIS . . . F 4 141.504 127.162 126.985 1 45.17 ? C14 A1AIS 504 A 1 
HETATM 4 C C16 A1AIS . . . F 4 139.122 126.793 127.718 1 45.17 ? C16 A1AIS 504 A 1 
HETATM 5 C C19 A1AIS . . . F 4 136.884 127.065 127.156 1 45.17 ? C19 A1AIS 504 A 1 
HETATM 6 C C20 A1AIS . . . F 4 135.981 128.291 127.103 1 45.17 ? C20 A1AIS 504 A 1 
HETATM 7 C C21 A1AIS . . . F 4 134.564 127.902 127.512 1 45.17 ? C21 A1AIS 504 A 1 
HETATM 8 O O22 A1AIS . . . F 4 134.63 126.707 128.239 1 45.17 ? O22 A1AIS 504 A 1 
HETATM 9 O O35 A1AIS . . . F 4 127.918 126.386 127.915 1 45.17 ? O35 A1AIS 504 A 1 
HETATM 10 C C39 A1AIS . . . F 4 137.14 129.511 125.509 1 45.17 ? C39 A1AIS 504 A 1 
HETATM 11 C C41 A1AIS . . . F 4 138.08 129.07 124.396 1 45.17 ? C41 A1AIS 504 A 1 
HETATM 12 C C44 A1AIS . . . F 4 141.237 130.464 122.874 1 45.17 ? C44 A1AIS 504 A 1 
HETATM 13 C C45 A1AIS . . . F 4 142.472 131.223 123.343 1 45.17 ? C45 A1AIS 504 A 1 
HETATM 14 C C47 A1AIS . . . F 4 142.912 131.321 120.837 1 45.17 ? C47 A1AIS 504 A 1 
HETATM 15 C C48 A1AIS . . . F 4 143.426 132.191 119.694 1 45.17 ? C48 A1AIS 504 A 1 
HETATM 16 C C49 A1AIS . . . F 4 144.915 132.493 119.827 1 45.17 ? C49 A1AIS 504 A 1 
HETATM 17 C C28 A1AIS . . . F 4 130.505 126.794 130.514 1 45.17 ? C28 A1AIS 504 A 1 
HETATM 18 C C29 A1AIS . . . F 4 129.212 127.101 129.778 1 45.17 ? C29 A1AIS 504 A 1 
HETATM 19 C C10 A1AIS . . . F 4 145.255 125.689 125.578 1 45.17 ? C10 A1AIS 504 A 1 
HETATM 20 C C13 A1AIS . . . F 4 142.663 128.156 126.98 1 45.17 ? C13 A1AIS 504 A 1 
HETATM 21 C C15 A1AIS . . . F 4 140.391 127.599 127.928 1 45.17 ? C15 A1AIS 504 A 1 
HETATM 22 C C27 A1AIS . . . F 4 131.68 126.865 129.55 1 45.17 ? C27 A1AIS 504 A 1 
HETATM 23 C C30 A1AIS . . . F 4 128.87 125.947 128.84 1 45.17 ? C30 A1AIS 504 A 1 
HETATM 24 C C31 A1AIS . . . F 4 130.075 125.411 128.065 1 45.17 ? C31 A1AIS 504 A 1 
HETATM 25 C C32 A1AIS . . . F 4 131.385 126.207 128.191 1 45.17 ? C32 A1AIS 504 A 1 
HETATM 26 C C42 A1AIS . . . F 4 138.981 130.22 123.97 1 45.17 ? C42 A1AIS 504 A 1 
HETATM 27 C C43 A1AIS . . . F 4 140.457 129.86 124.036 1 45.17 ? C43 A1AIS 504 A 1 
HETATM 28 C C46 A1AIS . . . F 4 143.202 131.932 122.206 1 45.17 ? C46 A1AIS 504 A 1 
HETATM 29 O O17 A1AIS . . . F 4 139.178 125.724 127.231 1 45.17 ? O17 A1AIS 504 A 1 
HETATM 30 O O18 A1AIS . . . F 4 137.889 127.318 128.09 1 45.17 ? O18 A1AIS 504 A 1 
HETATM 31 O O24 A1AIS . . . F 4 134.526 128.108 130.397 1 45.17 ? O24 A1AIS 504 A 1 
HETATM 32 O O25 A1AIS . . . F 4 135.264 125.788 130.547 1 45.17 ? O25 A1AIS 504 A 1 
HETATM 33 O O26 A1AIS . . . F 4 132.769 126.222 130.151 1 45.17 ? O26 A1AIS 504 A 1 
HETATM 34 O O33 A1AIS . . . F 4 131.359 127.206 127.213 1 45.17 ? O33 A1AIS 504 A 1 
HETATM 35 O O34 A1AIS . . . F 4 129.73 125.356 126.711 1 45.17 ? O34 A1AIS 504 A 1 
HETATM 36 O O36 A1AIS . . . F 4 128.174 127.267 130.72 1 45.17 ? O36 A1AIS 504 A 1 
HETATM 37 O O37 A1AIS . . . F 4 130.676 127.741 131.527 1 45.17 ? O37 A1AIS 504 A 1 
HETATM 38 O O38 A1AIS . . . F 4 135.982 128.792 125.802 1 45.17 ? O38 A1AIS 504 A 1 
HETATM 39 O O40 A1AIS . . . F 4 137.402 130.474 126.134 1 45.17 ? O40 A1AIS 504 A 1 
HETATM 40 P P23 A1AIS . . . F 4 134.312 126.722 129.853 1 45.17 ? P23 A1AIS 504 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#