data_9B4E # _model_server_result.job_id 0sNY8xS_i0AqQ_XTvzCbmA _model_server_result.datetime_utc '2024-10-18 22:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 9B4E # _exptl.entry_id 9B4E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B4E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 153 B CYS 153 1_555 B SG CYS 213 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE2 GLU 197 A GLU 197 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A OE1 GLU 200 A GLU 200 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc3 A OE1 GLN 217 A GLN 217 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A OD2 ASP 221 A ASP 221 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 B OE2 GLU 197 B GLU 197 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc6 B OE1 GLU 200 B GLU 200 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 B OE1 GLN 217 B GLN 217 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 B OD2 ASP 221 B ASP 221 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 1 n n C48 C49 6OU sing 2 n n C47 C46 6OU sing 3 n n C41 C40 6OU doub 4 z n C41 C42 6OU sing 5 n n C40 C39 6OU sing 6 n n C27 C28 6OU sing 7 n n C27 O26 6OU sing 8 n n C28 N29 6OU sing 9 n n C01 C02 6OU sing 10 n n C42 C43 6OU sing 11 n n C02 C03 6OU sing 12 n n C45 C46 6OU sing 13 n n C45 C44 6OU sing 14 n n C39 C38 6OU sing 15 n n C33 C34 6OU sing 16 n n C33 C31 6OU sing 17 n n C44 C43 6OU sing 18 n n O26 P23 6OU sing 19 n n O24 P23 6OU doub 20 n n C35 C34 6OU sing 21 n n C35 C36 6OU sing 22 n n C38 C37 6OU sing 23 n n C36 C37 6OU sing 24 n n C31 O30 6OU sing 25 n n C31 O32 6OU doub 26 n n O22 P23 6OU sing 27 n n O22 C21 6OU sing 28 n n O30 C20 6OU sing 29 n n P23 O25 6OU sing 30 n n C03 C04 6OU sing 31 n n C04 C05 6OU sing 32 n n C19 C20 6OU sing 33 n n C19 O18 6OU sing 34 n n C21 C20 6OU sing 35 n n C15 C14 6OU sing 36 n n C15 C16 6OU sing 37 n n O18 C16 6OU sing 38 n n C14 C13 6OU sing 39 n n C05 C06 6OU sing 40 n n C16 O17 6OU doub 41 n n C06 C07 6OU sing 42 n n C11 C10 6OU sing 43 n n C11 C12 6OU sing 44 n n C13 C12 6OU sing 45 n n C10 C09 6OU sing 46 n n C07 C08 6OU sing 47 n n C09 C08 6OU sing 48 n n C01 H1 6OU sing 49 n n C01 H2 6OU sing 50 n n C01 H3 6OU sing 51 n n C02 H4 6OU sing 52 n n C02 H5 6OU sing 53 n n C03 H6 6OU sing 54 n n C03 H7 6OU sing 55 n n C04 H8 6OU sing 56 n n C04 H9 6OU sing 57 n n C05 H10 6OU sing 58 n n C05 H11 6OU sing 59 n n C06 H12 6OU sing 60 n n C06 H13 6OU sing 61 n n C07 H14 6OU sing 62 n n C07 H15 6OU sing 63 n n C08 H16 6OU sing 64 n n C08 H17 6OU sing 65 n n C09 H18 6OU sing 66 n n C09 H19 6OU sing 67 n n C10 H20 6OU sing 68 n n C10 H21 6OU sing 69 n n C11 H22 6OU sing 70 n n C11 H23 6OU sing 71 n n C12 H24 6OU sing 72 n n C12 H25 6OU sing 73 n n C13 H26 6OU sing 74 n n C13 H27 6OU sing 75 n n C14 H28 6OU sing 76 n n C14 H29 6OU sing 77 n n C15 H30 6OU sing 78 n n C15 H31 6OU sing 79 n n C19 H32 6OU sing 80 n n C19 H33 6OU sing 81 n n C20 H34 6OU sing 82 n n C21 H35 6OU sing 83 n n C21 H36 6OU sing 84 n n O25 H37 6OU sing 85 n n C27 H38 6OU sing 86 n n C27 H39 6OU sing 87 n n C28 H40 6OU sing 88 n n C28 H41 6OU sing 89 n n N29 H42 6OU sing 90 n n N29 H43 6OU sing 91 n n C33 H45 6OU sing 92 n n C33 H46 6OU sing 93 n n C34 H47 6OU sing 94 n n C34 H48 6OU sing 95 n n C35 H49 6OU sing 96 n n C35 H50 6OU sing 97 n n C36 H51 6OU sing 98 n n C36 H52 6OU sing 99 n n C37 H53 6OU sing 100 n n C37 H54 6OU sing 101 n n C38 H55 6OU sing 102 n n C38 H56 6OU sing 103 n n C39 H57 6OU sing 104 n n C39 H58 6OU sing 105 n n C40 H59 6OU sing 106 n n C41 H60 6OU sing 107 n n C42 H61 6OU sing 108 n n C42 H62 6OU sing 109 n n C43 H63 6OU sing 110 n n C43 H64 6OU sing 111 n n C44 H65 6OU sing 112 n n C44 H66 6OU sing 113 n n C45 H67 6OU sing 114 n n C45 H68 6OU sing 115 n n C46 H69 6OU sing 116 n n C46 H70 6OU sing 117 n n C47 H71 6OU sing 118 n n C47 H72 6OU sing 119 n n C48 H73 6OU sing 120 n n C48 H74 6OU sing 121 n n C49 H75 6OU sing 122 n n C49 H76 6OU sing 123 n n C49 H77 6OU sing 124 n n # _atom_sites.entry_id 9B4E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P5S A 1 501 500 P5S P5S . D 2 P5S A 1 502 501 P5S P5S . E 3 LBN A 1 503 602 LBN LBN . F 4 A1AIS A 1 504 701 A1AIS DPI . G 5 6OU A 1 505 801 6OU PPE . H 6 CA A 1 506 901 CA CA . I 3 LBN A 1 507 601 LBN LBN . J 3 LBN B 1 601 601 LBN LBN . K 2 P5S B 1 602 500 P5S P5S . L 2 P5S B 1 603 501 P5S P5S . M 3 LBN B 1 604 602 LBN LBN . N 4 A1AIS B 1 605 701 A1AIS DPI . O 5 6OU B 1 606 801 6OU PPE . P 6 CA B 1 607 901 CA CA . Q 7 HOH A 1 601 1146 HOH HOH . Q 7 HOH A 2 602 1111 HOH HOH . Q 7 HOH A 3 603 1126 HOH HOH . Q 7 HOH A 4 604 1143 HOH HOH . Q 7 HOH A 5 605 1114 HOH HOH . Q 7 HOH A 6 606 1141 HOH HOH . Q 7 HOH A 7 607 1103 HOH HOH . Q 7 HOH A 8 608 1134 HOH HOH . R 7 HOH B 1 701 1146 HOH HOH . R 7 HOH B 2 702 1126 HOH HOH . R 7 HOH B 3 703 1111 HOH HOH . R 7 HOH B 4 704 1143 HOH HOH . R 7 HOH B 5 705 1114 HOH HOH . R 7 HOH B 6 706 1141 HOH HOH . R 7 HOH B 7 707 1103 HOH HOH . R 7 HOH B 8 708 1134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C09 6OU . . . G 5 143.46 103.159 115.91 1 64.88 ? C09 6OU 505 A 1 HETATM 2 C C10 6OU . . . G 5 141.972 102.824 115.673 1 64.88 ? C10 6OU 505 A 1 HETATM 3 C C11 6OU . . . G 5 141.623 102.675 114.173 1 64.88 ? C11 6OU 505 A 1 HETATM 4 C C12 6OU . . . G 5 142.778 102.064 113.352 1 64.88 ? C12 6OU 505 A 1 HETATM 5 C C13 6OU . . . G 5 142.345 101.689 111.913 1 64.88 ? C13 6OU 505 A 1 HETATM 6 C C14 6OU . . . G 5 141.406 102.739 111.286 1 64.88 ? C14 6OU 505 A 1 HETATM 7 C C15 6OU . . . G 5 140.626 102.166 110.082 1 64.88 ? C15 6OU 505 A 1 HETATM 8 C C16 6OU . . . G 5 139.104 102.308 110.286 1 64.88 ? C16 6OU 505 A 1 HETATM 9 O O17 6OU . . . G 5 138.69 102.983 111.159 1 64.88 ? O17 6OU 505 A 1 HETATM 10 O O18 6OU . . . G 5 138.198 101.631 109.429 1 64.88 ? O18 6OU 505 A 1 HETATM 11 C C19 6OU . . . G 5 137.04 101.156 110.105 1 64.88 ? C19 6OU 505 A 1 HETATM 12 C C20 6OU . . . G 5 136.82 99.692 109.697 1 64.88 ? C20 6OU 505 A 1 HETATM 13 C C21 6OU . . . G 5 135.747 99.626 108.602 1 64.88 ? C21 6OU 505 A 1 HETATM 14 O O22 6OU . . . G 5 136.159 98.729 107.599 1 64.88 ? O22 6OU 505 A 1 HETATM 15 P P23 6OU . . . G 5 135.08 97.535 107.144 1 64.88 ? P23 6OU 505 A 1 HETATM 16 O O24 6OU . . . G 5 134.999 97.468 105.638 1 64.88 ? O24 6OU 505 A 1 HETATM 17 O O25 6OU . . . G 5 133.724 97.853 107.714 1 64.88 ? O25 6OU 505 A 1 HETATM 18 O O26 6OU . . . G 5 135.599 96.065 107.71 1 64.88 ? O26 6OU 505 A 1 HETATM 19 C C27 6OU . . . G 5 135.101 95.593 108.938 1 64.88 ? C27 6OU 505 A 1 HETATM 20 C C28 6OU . . . G 5 134.973 94.067 108.831 1 64.88 ? C28 6OU 505 A 1 HETATM 21 N N29 6OU . . . G 5 135.476 93.606 107.538 1 64.88 ? N29 6OU 505 A 1 HETATM 22 O O30 6OU . . . G 5 136.456 98.906 110.799 1 64.88 ? O30 6OU 505 A 1 HETATM 23 C C31 6OU . . . G 5 135.486 99.399 111.694 1 64.88 ? C31 6OU 505 A 1 HETATM 24 O O32 6OU . . . G 5 134.354 99.526 111.352 1 64.88 ? O32 6OU 505 A 1 HETATM 25 C C33 6OU . . . G 5 135.876 99.729 113.142 1 64.88 ? C33 6OU 505 A 1 HETATM 26 C C34 6OU . . . G 5 135.562 101.163 113.585 1 64.88 ? C34 6OU 505 A 1 HETATM 27 C C35 6OU . . . G 5 136.703 101.796 114.407 1 64.88 ? C35 6OU 505 A 1 HETATM 28 C C36 6OU . . . G 5 136.176 102.511 115.65 1 64.88 ? C36 6OU 505 A 1 HETATM 29 C C37 6OU . . . G 5 137.238 103.399 116.327 1 64.88 ? C37 6OU 505 A 1 HETATM 30 C C38 6OU . . . G 5 136.652 104.743 116.769 1 64.88 ? C38 6OU 505 A 1 HETATM 31 C C39 6OU . . . G 5 137.536 105.465 117.791 1 64.88 ? C39 6OU 505 A 1 HETATM 32 C C40 6OU . . . G 5 137.88 106.858 117.262 1 64.88 ? C40 6OU 505 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 157 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #