data_9B4E
#
_model_server_result.job_id            X59z2_Xoohi2i_rTeL6yeA 
_model_server_result.datetime_utc      '2024-10-18 22:26:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b4e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":507}' 
#
_entry.id    9B4E 
#
_exptl.entry_id    9B4E 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B4E 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B4E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
? 3 J N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 153 B CYS 153 1_555 B SG CYS 213 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE2 GLU 197 A GLU 197 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc2 A OE1 GLU 200 A GLU 200 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc3 A OE1 GLN 217 A GLN 217 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc4 A OD2 ASP 221 A ASP 221 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc5 B OE2 GLU 197 B GLU 197 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc6 B OE1 GLU 200 B GLU 200 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc7 B OE1 GLN 217 B GLN 217 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc8 B OD2 ASP 221 B ASP 221 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 431 n n 
O3 P1 LBN sing 432 n n 
O2 C9 LBN sing 433 n n 
O2 P1 LBN sing 434 n n 
C9 C6 LBN sing 435 n n 
O4 P1 LBN doub 436 n n 
P1 O1 LBN sing 437 n n 
C6 N1 LBN sing 438 n n 
N1 C15 LBN sing 439 n n 
N1 C18 LBN sing 440 n n 
O1 C1 LBN sing 441 n n 
C2 C1 LBN sing 442 n n 
C2 C3 LBN sing 443 n n 
C2 O7 LBN sing 444 n n 
C3 O5 LBN sing 445 n n 
O6 C25 LBN doub 446 n n 
O5 C25 LBN sing 447 n n 
O7 C34 LBN sing 448 n n 
C25 C26 LBN sing 449 n n 
C34 C35 LBN sing 450 n n 
C34 O8 LBN doub 451 n n 
C26 C27 LBN sing 452 n n 
C35 C36 LBN sing 453 n n 
C27 C28 LBN sing 454 n n 
C36 C37 LBN sing 455 n n 
C28 C29 LBN sing 456 n n 
C37 C38 LBN sing 457 n n 
C29 C30 LBN sing 458 n n 
C39 C38 LBN sing 459 n n 
C39 C40 LBN sing 460 n n 
C41 C40 LBN sing 461 n n 
C41 C42 LBN sing 462 n n 
C30 C31 LBN sing 463 n n 
C42 C5 LBN doub 464 z n 
C31 C32 LBN sing 465 n n 
C5 C8 LBN sing 466 n n 
C8 C11 LBN sing 467 n n 
C32 C33 LBN sing 468 n n 
C11 C14 LBN sing 469 n n 
C33 C4 LBN sing 470 n n 
C14 C17 LBN sing 471 n n 
C4 C7 LBN sing 472 n n 
C17 C20 LBN sing 473 n n 
C7 C10 LBN sing 474 n n 
C20 C22 LBN sing 475 n n 
C10 C13 LBN sing 476 n n 
C22 C23 LBN sing 477 n n 
C13 C16 LBN sing 478 n n 
C23 C24 LBN sing 479 n n 
C16 C19 LBN sing 480 n n 
C19 C21 LBN sing 481 n n 
C1 H1 LBN sing 482 n n 
C1 H2 LBN sing 483 n n 
C2 H3 LBN sing 484 n n 
C3 H4 LBN sing 485 n n 
C3 H5 LBN sing 486 n n 
C4 H6 LBN sing 487 n n 
C4 H7 LBN sing 488 n n 
C5 H8 LBN sing 489 n n 
C6 H9 LBN sing 490 n n 
C6 H10 LBN sing 491 n n 
C7 H11 LBN sing 492 n n 
C7 H12 LBN sing 493 n n 
C8 H13 LBN sing 494 n n 
C8 H14 LBN sing 495 n n 
C9 H15 LBN sing 496 n n 
C9 H16 LBN sing 497 n n 
C10 H17 LBN sing 498 n n 
C10 H18 LBN sing 499 n n 
C11 H19 LBN sing 500 n n 
C12 H20 LBN sing 501 n n 
C12 H21 LBN sing 502 n n 
C12 H22 LBN sing 503 n n 
C13 H23 LBN sing 504 n n 
C13 H24 LBN sing 505 n n 
C14 H25 LBN sing 506 n n 
C15 H26 LBN sing 507 n n 
C15 H27 LBN sing 508 n n 
C15 H28 LBN sing 509 n n 
C16 H30 LBN sing 510 n n 
C16 H31 LBN sing 511 n n 
C17 H32 LBN sing 512 n n 
C17 H33 LBN sing 513 n n 
C18 H34 LBN sing 514 n n 
C18 H35 LBN sing 515 n n 
C18 H36 LBN sing 516 n n 
C19 H37 LBN sing 517 n n 
C19 H38 LBN sing 518 n n 
C20 H39 LBN sing 519 n n 
C20 H40 LBN sing 520 n n 
C21 H41 LBN sing 521 n n 
C21 H42 LBN sing 522 n n 
C21 H43 LBN sing 523 n n 
C22 H44 LBN sing 524 n n 
C22 H45 LBN sing 525 n n 
C23 H46 LBN sing 526 n n 
C23 H47 LBN sing 527 n n 
C24 H48 LBN sing 528 n n 
C24 H49 LBN sing 529 n n 
C24 H50 LBN sing 530 n n 
C26 H51 LBN sing 531 n n 
C26 H52 LBN sing 532 n n 
C27 H53 LBN sing 533 n n 
C27 H54 LBN sing 534 n n 
C28 H55 LBN sing 535 n n 
C28 H56 LBN sing 536 n n 
C29 H57 LBN sing 537 n n 
C29 H58 LBN sing 538 n n 
C30 H59 LBN sing 539 n n 
C30 H60 LBN sing 540 n n 
C31 H61 LBN sing 541 n n 
C31 H62 LBN sing 542 n n 
C32 H63 LBN sing 543 n n 
C32 H64 LBN sing 544 n n 
C33 H65 LBN sing 545 n n 
C33 H66 LBN sing 546 n n 
C35 H67 LBN sing 547 n n 
C35 H68 LBN sing 548 n n 
C36 H69 LBN sing 549 n n 
C36 H70 LBN sing 550 n n 
C37 H71 LBN sing 551 n n 
C37 H72 LBN sing 552 n n 
C38 H73 LBN sing 553 n n 
C38 H74 LBN sing 554 n n 
C39 H75 LBN sing 555 n n 
C40 H76 LBN sing 556 n n 
C41 H77 LBN sing 557 n n 
C41 H78 LBN sing 558 n n 
C42 H79 LBN sing 559 n n 
C11 H80 LBN sing 560 n n 
C14 H81 LBN sing 561 n n 
C39 H82 LBN sing 562 n n 
C40 H83 LBN sing 563 n n 
#
_atom_sites.entry_id                     9B4E 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 P5S A 1 501 500 P5S P5S . 
D 2 P5S A 1 502 501 P5S P5S . 
E 3 LBN A 1 503 602 LBN LBN . 
F 4 A1AIS A 1 504 701 A1AIS DPI . 
G 5 6OU A 1 505 801 6OU PPE . 
H 6 CA A 1 506 901 CA CA . 
I 3 LBN A 1 507 601 LBN LBN . 
J 3 LBN B 1 601 601 LBN LBN . 
K 2 P5S B 1 602 500 P5S P5S . 
L 2 P5S B 1 603 501 P5S P5S . 
M 3 LBN B 1 604 602 LBN LBN . 
N 4 A1AIS B 1 605 701 A1AIS DPI . 
O 5 6OU B 1 606 801 6OU PPE . 
P 6 CA B 1 607 901 CA CA . 
Q 7 HOH A 1 601 1146 HOH HOH . 
Q 7 HOH A 2 602 1111 HOH HOH . 
Q 7 HOH A 3 603 1126 HOH HOH . 
Q 7 HOH A 4 604 1143 HOH HOH . 
Q 7 HOH A 5 605 1114 HOH HOH . 
Q 7 HOH A 6 606 1141 HOH HOH . 
Q 7 HOH A 7 607 1103 HOH HOH . 
Q 7 HOH A 8 608 1134 HOH HOH . 
R 7 HOH B 1 701 1146 HOH HOH . 
R 7 HOH B 2 702 1126 HOH HOH . 
R 7 HOH B 3 703 1111 HOH HOH . 
R 7 HOH B 4 704 1143 HOH HOH . 
R 7 HOH B 5 705 1114 HOH HOH . 
R 7 HOH B 6 706 1141 HOH HOH . 
R 7 HOH B 7 707 1103 HOH HOH . 
R 7 HOH B 8 708 1134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . I 3 142.754 140.199 126.81 1 44.85 ? C1 LBN 507 A 1 
HETATM 2 N N1 LBN . . . I 3 137.134 136.507 128.954 1 44.85 ? N1 LBN 507 A 1 
HETATM 3 P P1 LBN . . . I 3 141.263 138.108 127.378 1 44.85 ? P1 LBN 507 A 1 
HETATM 4 C C2 LBN . . . I 3 142.09 140.834 125.587 1 44.85 ? C2 LBN 507 A 1 
HETATM 5 C C3 LBN . . . I 3 141.874 142.293 125.896 1 44.85 ? C3 LBN 507 A 1 
HETATM 6 C C4 LBN . . . I 3 138.2 143.335 117.088 1 44.85 ? C4 LBN 507 A 1 
HETATM 7 C C6 LBN . . . I 3 138.039 136.745 127.86 1 44.85 ? C6 LBN 507 A 1 
HETATM 8 O O1 LBN . . . I 3 141.742 139.679 127.633 1 44.85 ? O1 LBN 507 A 1 
HETATM 9 C C7 LBN . . . I 3 139.574 143.585 116.439 1 44.85 ? C7 LBN 507 A 1 
HETATM 10 C C9 LBN . . . I 3 138.824 138.02 128.077 1 44.85 ? C9 LBN 507 A 1 
HETATM 11 O O2 LBN . . . I 3 139.686 138.099 126.994 1 44.85 ? O2 LBN 507 A 1 
HETATM 12 C C10 LBN . . . I 3 139.446 143.892 114.945 1 44.85 ? C10 LBN 507 A 1 
HETATM 13 C C12 LBN . . . I 3 136.4 135.296 128.681 1 44.85 ? C12 LBN 507 A 1 
HETATM 14 O O3 LBN . . . I 3 142.051 137.486 126.258 1 44.85 ? O3 LBN 507 A 1 
HETATM 15 C C13 LBN . . . I 3 140.567 144.802 114.432 1 44.85 ? C13 LBN 507 A 1 
HETATM 16 C C15 LBN . . . I 3 137.886 136.377 130.185 1 44.85 ? C15 LBN 507 A 1 
HETATM 17 O O4 LBN . . . I 3 141.432 137.296 128.633 1 44.85 ? O4 LBN 507 A 1 
HETATM 18 C C18 LBN . . . I 3 136.223 137.626 129.032 1 44.85 ? C18 LBN 507 A 1 
HETATM 19 C C25 LBN . . . I 3 140.642 143.726 127.274 1 44.85 ? C25 LBN 507 A 1 
HETATM 20 O O5 LBN . . . I 3 141.023 142.4 127.002 1 44.85 ? O5 LBN 507 A 1 
HETATM 21 C C26 LBN . . . I 3 139.415 144.33 126.578 1 44.85 ? C26 LBN 507 A 1 
HETATM 22 O O6 LBN . . . I 3 141.266 144.373 128.042 1 44.85 ? O6 LBN 507 A 1 
HETATM 23 C C27 LBN . . . I 3 139.759 145.026 125.248 1 44.85 ? C27 LBN 507 A 1 
HETATM 24 C C28 LBN . . . I 3 139.375 144.153 124.043 1 44.85 ? C28 LBN 507 A 1 
HETATM 25 C C29 LBN . . . I 3 138.282 144.766 123.163 1 44.85 ? C29 LBN 507 A 1 
HETATM 26 C C30 LBN . . . I 3 138.625 144.6 121.682 1 44.85 ? C30 LBN 507 A 1 
HETATM 27 C C31 LBN . . . I 3 137.78 143.511 120.997 1 44.85 ? C31 LBN 507 A 1 
HETATM 28 C C32 LBN . . . I 3 137.527 143.84 119.509 1 44.85 ? C32 LBN 507 A 1 
HETATM 29 C C33 LBN . . . I 3 138.306 142.893 118.563 1 44.85 ? C33 LBN 507 A 1 
HETATM 30 C C34 LBN . . . I 3 142.438 141.345 123.29 1 44.85 ? C34 LBN 507 A 1 
HETATM 31 O O7 LBN . . . I 3 142.951 140.731 124.469 1 44.85 ? O7 LBN 507 A 1 
HETATM 32 C C35 LBN . . . I 3 143.252 142.451 122.557 1 44.85 ? C35 LBN 507 A 1 
HETATM 33 O O8 LBN . . . I 3 141.383 141.013 122.872 1 44.85 ? O8 LBN 507 A 1 
HETATM 34 C C36 LBN . . . I 3 142.835 142.612 121.078 1 44.85 ? C36 LBN 507 A 1 
HETATM 35 C C37 LBN . . . I 3 142.213 143.983 120.784 1 44.85 ? C37 LBN 507 A 1 
HETATM 36 C C38 LBN . . . I 3 142.479 144.443 119.343 1 44.85 ? C38 LBN 507 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           36 
#