data_9B4E # _model_server_result.job_id NqxOd6MfALl-WC7IGrAN5w _model_server_result.datetime_utc '2024-10-18 22:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":605}' # _entry.id 9B4E # _exptl.entry_id 9B4E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 811.032 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B4E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 153 B CYS 153 1_555 B SG CYS 213 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE2 GLU 197 A GLU 197 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A OE1 GLU 200 A GLU 200 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc3 A OE1 GLN 217 A GLN 217 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A OD2 ASP 221 A ASP 221 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc5 B OE2 GLU 197 B GLU 197 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc6 B OE1 GLU 200 B GLU 200 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 B OE1 GLN 217 B GLN 217 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 B OD2 ASP 221 B ASP 221 1_555 P CA CA . B CA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C41 H79 O13 P' _chem_comp.formula_weight 811.032 _chem_comp.id A1AIS _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C49 C48 A1AIS sing 125 n n C48 C47 A1AIS sing 126 n n C47 C46 A1AIS sing 127 n n C46 C45 A1AIS sing 128 n n C44 C45 A1AIS sing 129 n n C44 C43 A1AIS sing 130 n n C42 C43 A1AIS sing 131 n n C42 C41 A1AIS sing 132 n n C41 C39 A1AIS sing 133 n n C10 C11 A1AIS sing 134 n n C39 O38 A1AIS sing 135 n n C39 O40 A1AIS doub 136 n n O38 C20 A1AIS sing 137 n n C12 C11 A1AIS sing 138 n n C12 C13 A1AIS sing 139 n n O34 C31 A1AIS sing 140 n n C13 C14 A1AIS sing 141 n n C20 C19 A1AIS sing 142 n n C20 C21 A1AIS sing 143 n n C14 C15 A1AIS sing 144 n n O33 C32 A1AIS sing 145 n n C19 O18 A1AIS sing 146 n n C21 O22 A1AIS sing 147 n n O17 C16 A1AIS doub 148 n n C16 O18 A1AIS sing 149 n n C16 C15 A1AIS sing 150 n n C31 C32 A1AIS sing 151 n n C31 C30 A1AIS sing 152 n n O35 C30 A1AIS sing 153 n n C32 C27 A1AIS sing 154 n n O22 P23 A1AIS sing 155 n n C30 C29 A1AIS sing 156 n n C27 O26 A1AIS sing 157 n n C27 C28 A1AIS sing 158 n n P23 O26 A1AIS sing 159 n n P23 O24 A1AIS doub 160 n n P23 O25 A1AIS sing 161 n n C29 C28 A1AIS sing 162 n n C29 O36 A1AIS sing 163 n n C28 O37 A1AIS sing 164 n n C11 H1 A1AIS sing 165 n n C11 H2 A1AIS sing 166 n n C12 H3 A1AIS sing 167 n n C12 H4 A1AIS sing 168 n n C14 H5 A1AIS sing 169 n n C14 H6 A1AIS sing 170 n n C19 H7 A1AIS sing 171 n n C19 H8 A1AIS sing 172 n n C20 H9 A1AIS sing 173 n n C21 H10 A1AIS sing 174 n n C21 H11 A1AIS sing 175 n n O35 H12 A1AIS sing 176 n n C41 H13 A1AIS sing 177 n n C41 H14 A1AIS sing 178 n n C44 H15 A1AIS sing 179 n n C44 H16 A1AIS sing 180 n n C45 H17 A1AIS sing 181 n n C45 H18 A1AIS sing 182 n n C47 H19 A1AIS sing 183 n n C47 H20 A1AIS sing 184 n n C48 H21 A1AIS sing 185 n n C48 H22 A1AIS sing 186 n n C49 H23 A1AIS sing 187 n n C49 H24 A1AIS sing 188 n n C28 H26 A1AIS sing 189 n n C29 H27 A1AIS sing 190 n n C10 H28 A1AIS sing 191 n n C10 H29 A1AIS sing 192 n n C13 H31 A1AIS sing 193 n n C13 H32 A1AIS sing 194 n n C15 H33 A1AIS sing 195 n n C15 H34 A1AIS sing 196 n n C27 H35 A1AIS sing 197 n n C30 H36 A1AIS sing 198 n n C31 H37 A1AIS sing 199 n n C32 H38 A1AIS sing 200 n n C42 H39 A1AIS sing 201 n n C42 H40 A1AIS sing 202 n n C43 H41 A1AIS sing 203 n n C43 H42 A1AIS sing 204 n n C46 H43 A1AIS sing 205 n n C46 H44 A1AIS sing 206 n n O25 H45 A1AIS sing 207 n n O33 H46 A1AIS sing 208 n n O34 H47 A1AIS sing 209 n n O36 H48 A1AIS sing 210 n n O37 H49 A1AIS sing 211 n n C10 C1 A1AIS sing 212 n n C1 C2 A1AIS sing 213 n n C2 C3 A1AIS sing 214 n n C3 C4 A1AIS sing 215 n n C4 C5 A1AIS sing 216 n n C5 C6 A1AIS sing 217 n n C6 C7 A1AIS sing 218 n n C7 C8 A1AIS sing 219 n n C8 C9 A1AIS sing 220 n n C49 C17 A1AIS sing 221 n n C17 C18 A1AIS sing 222 n n C18 C22 A1AIS sing 223 n n C22 C23 A1AIS sing 224 n n C23 C24 A1AIS sing 225 n n C24 C25 A1AIS sing 226 n n C1 H25 A1AIS sing 227 n n C1 H30 A1AIS sing 228 n n C2 H50 A1AIS sing 229 n n C2 H51 A1AIS sing 230 n n C3 H52 A1AIS sing 231 n n C3 H53 A1AIS sing 232 n n C4 H54 A1AIS sing 233 n n C4 H55 A1AIS sing 234 n n C5 H56 A1AIS sing 235 n n C5 H57 A1AIS sing 236 n n C6 H58 A1AIS sing 237 n n C6 H59 A1AIS sing 238 n n C7 H60 A1AIS sing 239 n n C7 H61 A1AIS sing 240 n n C8 H62 A1AIS sing 241 n n C8 H63 A1AIS sing 242 n n C9 H64 A1AIS sing 243 n n C9 H65 A1AIS sing 244 n n C9 H66 A1AIS sing 245 n n C17 H67 A1AIS sing 246 n n C17 H68 A1AIS sing 247 n n C18 H69 A1AIS sing 248 n n C18 H70 A1AIS sing 249 n n C22 H71 A1AIS sing 250 n n C22 H72 A1AIS sing 251 n n C23 H73 A1AIS sing 252 n n C23 H74 A1AIS sing 253 n n C24 H75 A1AIS sing 254 n n C24 H76 A1AIS sing 255 n n C25 H77 A1AIS sing 256 n n C25 H78 A1AIS sing 257 n n C25 H79 A1AIS sing 258 n n # _atom_sites.entry_id 9B4E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P5S A 1 501 500 P5S P5S . D 2 P5S A 1 502 501 P5S P5S . E 3 LBN A 1 503 602 LBN LBN . F 4 A1AIS A 1 504 701 A1AIS DPI . G 5 6OU A 1 505 801 6OU PPE . H 6 CA A 1 506 901 CA CA . I 3 LBN A 1 507 601 LBN LBN . J 3 LBN B 1 601 601 LBN LBN . K 2 P5S B 1 602 500 P5S P5S . L 2 P5S B 1 603 501 P5S P5S . M 3 LBN B 1 604 602 LBN LBN . N 4 A1AIS B 1 605 701 A1AIS DPI . O 5 6OU B 1 606 801 6OU PPE . P 6 CA B 1 607 901 CA CA . Q 7 HOH A 1 601 1146 HOH HOH . Q 7 HOH A 2 602 1111 HOH HOH . Q 7 HOH A 3 603 1126 HOH HOH . Q 7 HOH A 4 604 1143 HOH HOH . Q 7 HOH A 5 605 1114 HOH HOH . Q 7 HOH A 6 606 1141 HOH HOH . Q 7 HOH A 7 607 1103 HOH HOH . Q 7 HOH A 8 608 1134 HOH HOH . R 7 HOH B 1 701 1146 HOH HOH . R 7 HOH B 2 702 1126 HOH HOH . R 7 HOH B 3 703 1111 HOH HOH . R 7 HOH B 4 704 1143 HOH HOH . R 7 HOH B 5 705 1114 HOH HOH . R 7 HOH B 6 706 1141 HOH HOH . R 7 HOH B 7 707 1103 HOH HOH . R 7 HOH B 8 708 1134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1AIS . . . N 4 106.436 124.099 125.829 1 45.28 ? C11 A1AIS 605 B 1 HETATM 2 C C12 A1AIS . . . N 4 106.459 122.592 126.081 1 45.28 ? C12 A1AIS 605 B 1 HETATM 3 C C14 A1AIS . . . N 4 108.773 123.147 126.986 1 45.28 ? C14 A1AIS 605 B 1 HETATM 4 C C16 A1AIS . . . N 4 111.154 123.516 127.722 1 45.28 ? C16 A1AIS 605 B 1 HETATM 5 C C19 A1AIS . . . N 4 113.393 123.241 127.164 1 45.28 ? C19 A1AIS 605 B 1 HETATM 6 C C20 A1AIS . . . N 4 114.295 122.014 127.114 1 45.28 ? C20 A1AIS 605 B 1 HETATM 7 C C21 A1AIS . . . N 4 115.711 122.403 127.524 1 45.28 ? C21 A1AIS 605 B 1 HETATM 8 O O22 A1AIS . . . N 4 115.645 123.599 128.249 1 45.28 ? O22 A1AIS 605 B 1 HETATM 9 O O35 A1AIS . . . N 4 122.358 123.914 127.934 1 45.28 ? O35 A1AIS 605 B 1 HETATM 10 C C39 A1AIS . . . N 4 113.137 120.793 125.52 1 45.28 ? C39 A1AIS 605 B 1 HETATM 11 C C41 A1AIS . . . N 4 112.199 121.233 124.405 1 45.28 ? C41 A1AIS 605 B 1 HETATM 12 C C44 A1AIS . . . N 4 109.043 119.84 122.88 1 45.28 ? C44 A1AIS 605 B 1 HETATM 13 C C45 A1AIS . . . N 4 107.807 119.082 123.349 1 45.28 ? C45 A1AIS 605 B 1 HETATM 14 C C47 A1AIS . . . N 4 107.37 118.981 120.842 1 45.28 ? C47 A1AIS 605 B 1 HETATM 15 C C48 A1AIS . . . N 4 106.857 118.11 119.7 1 45.28 ? C48 A1AIS 605 B 1 HETATM 16 C C49 A1AIS . . . N 4 105.367 117.809 119.831 1 45.28 ? C49 A1AIS 605 B 1 HETATM 17 C C28 A1AIS . . . N 4 119.767 123.512 130.53 1 45.28 ? C28 A1AIS 605 B 1 HETATM 18 C C29 A1AIS . . . N 4 121.061 123.203 129.796 1 45.28 ? C29 A1AIS 605 B 1 HETATM 19 C C10 A1AIS . . . N 4 105.025 124.621 125.572 1 45.28 ? C10 A1AIS 605 B 1 HETATM 20 C C13 A1AIS . . . N 4 107.613 122.154 126.981 1 45.28 ? C13 A1AIS 605 B 1 HETATM 21 C C15 A1AIS . . . N 4 109.884 122.711 127.932 1 45.28 ? C15 A1AIS 605 B 1 HETATM 22 C C27 A1AIS . . . N 4 118.593 123.44 129.564 1 45.28 ? C27 A1AIS 605 B 1 HETATM 23 C C30 A1AIS . . . N 4 121.405 124.355 128.857 1 45.28 ? C30 A1AIS 605 B 1 HETATM 24 C C31 A1AIS . . . N 4 120.202 124.891 128.08 1 45.28 ? C31 A1AIS 605 B 1 HETATM 25 C C32 A1AIS . . . N 4 118.891 124.096 128.205 1 45.28 ? C32 A1AIS 605 B 1 HETATM 26 C C42 A1AIS . . . N 4 111.298 120.083 123.979 1 45.28 ? C42 A1AIS 605 B 1 HETATM 27 C C43 A1AIS . . . N 4 109.822 120.445 124.043 1 45.28 ? C43 A1AIS 605 B 1 HETATM 28 C C46 A1AIS . . . N 4 107.078 118.372 122.212 1 45.28 ? C46 A1AIS 605 B 1 HETATM 29 O O17 A1AIS . . . N 4 111.1 124.584 127.234 1 45.28 ? O17 A1AIS 605 B 1 HETATM 30 O O18 A1AIS . . . N 4 112.386 122.99 128.097 1 45.28 ? O18 A1AIS 605 B 1 HETATM 31 O O24 A1AIS . . . N 4 115.745 122.201 130.409 1 45.28 ? O24 A1AIS 605 B 1 HETATM 32 O O25 A1AIS . . . N 4 115.009 124.522 130.555 1 45.28 ? O25 A1AIS 605 B 1 HETATM 33 O O26 A1AIS . . . N 4 117.504 124.085 130.163 1 45.28 ? O26 A1AIS 605 B 1 HETATM 34 O O33 A1AIS . . . N 4 118.917 123.096 127.228 1 45.28 ? O33 A1AIS 605 B 1 HETATM 35 O O34 A1AIS . . . N 4 120.549 124.944 126.726 1 45.28 ? O34 A1AIS 605 B 1 HETATM 36 O O36 A1AIS . . . N 4 122.098 123.037 130.74 1 45.28 ? O36 A1AIS 605 B 1 HETATM 37 O O37 A1AIS . . . N 4 119.594 122.566 131.544 1 45.28 ? O37 A1AIS 605 B 1 HETATM 38 O O38 A1AIS . . . N 4 114.295 121.512 125.813 1 45.28 ? O38 A1AIS 605 B 1 HETATM 39 O O40 A1AIS . . . N 4 112.873 119.831 126.146 1 45.28 ? O40 A1AIS 605 B 1 HETATM 40 P P23 A1AIS . . . N 4 115.961 123.586 129.864 1 45.28 ? P23 A1AIS 605 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #